Wall clock time and date at job start Sun Mar 7 2021 09:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86296 * 110.06442 * 2 1 4 4 C 1.87530 * 110.00365 * 121.36632 * 2 1 3 5 5 C 1.53926 * 106.84798 * 75.50085 * 4 2 1 6 6 C 1.52622 * 109.31171 * 57.20853 * 5 4 2 7 7 N 1.46359 * 111.88864 * 283.47280 * 6 5 4 8 8 N 1.36605 * 110.99785 * 203.19835 * 7 6 5 9 9 C 1.34769 * 119.99845 * 116.05055 * 8 7 6 10 10 O 1.21599 * 120.00264 * 359.97438 * 9 8 7 11 11 C 1.47562 * 120.00160 * 179.97438 * 9 8 7 12 12 C 1.39840 * 119.99482 * 359.73008 * 11 9 8 13 13 C 1.36569 * 119.99347 * 179.69481 * 12 11 9 14 14 C 1.39822 * 120.00178 * 0.57270 * 13 12 11 15 15 C 1.47559 * 120.00161 * 179.69897 * 14 13 12 16 16 C 1.34980 * 125.27079 * 0.02562 * 15 14 13 17 17 C 1.37802 * 114.69654 * 179.97438 * 16 15 14 18 18 C 1.33746 * 115.08509 * 359.97438 * 17 16 15 19 19 C 1.50693 * 125.12023 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.46949 * 65.00328 * 19 18 17 21 21 Si 1.86301 * 109.47060 * 185.00004 * 19 18 17 22 22 H 1.48506 * 109.46991 * 60.00128 * 21 19 18 23 23 H 1.48499 * 109.46976 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47339 * 300.00409 * 21 19 18 25 25 S 1.75860 * 109.75675 * 359.75704 * 18 17 16 26 26 C 1.39824 * 120.00161 * 359.72173 * 14 13 12 27 27 C 1.36563 * 120.00113 * 359.97438 * 26 14 13 28 28 C 1.47724 * 111.30531 * 79.02629 * 7 6 5 29 29 H 1.09002 * 109.47312 * 298.63768 * 1 2 3 30 30 H 1.09004 * 109.47242 * 58.63960 * 1 2 3 31 31 H 1.08999 * 109.46951 * 178.63219 * 1 2 3 32 32 H 1.08999 * 109.47582 * 181.35928 * 3 2 1 33 33 H 1.08995 * 109.47566 * 301.36700 * 3 2 1 34 34 H 1.09003 * 109.47244 * 61.36400 * 3 2 1 35 35 H 1.08997 * 109.97866 * 194.83907 * 4 2 1 36 36 H 1.09003 * 109.97340 * 316.07395 * 4 2 1 37 37 H 1.09007 * 109.49731 * 177.15726 * 5 4 2 38 38 H 1.08997 * 109.49742 * 297.22020 * 5 4 2 39 39 H 1.08993 * 108.99940 * 44.09714 * 6 5 4 40 40 H 1.08998 * 108.99652 * 162.93788 * 6 5 4 41 41 H 0.97003 * 119.99892 * 296.04090 * 8 7 6 42 42 H 1.07991 * 120.00192 * 359.97438 * 12 11 9 43 43 H 1.07998 * 119.99570 * 180.29671 * 13 12 11 44 44 H 1.07996 * 122.65515 * 359.95857 * 16 15 14 45 45 H 1.08000 * 122.45647 * 179.97438 * 17 16 15 46 46 H 1.08994 * 109.47060 * 305.00341 * 19 18 17 47 47 H 0.96707 * 114.00250 * 180.02562 * 20 19 18 48 48 H 1.07996 * 120.00143 * 180.02562 * 26 14 13 49 49 H 1.08006 * 119.99773 * 179.97438 * 27 26 14 50 50 H 1.08995 * 109.94949 * 180.31738 * 28 7 6 51 51 H 1.08996 * 109.94990 * 59.05933 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5021 1.7499 0.0000 4 6 2.5044 -0.9172 1.5046 5 6 2.3105 -2.4189 1.2279 6 6 3.0398 -2.7933 -0.0594 7 7 2.3059 -2.3583 -1.2486 8 7 2.6567 -3.1018 -2.3395 9 6 1.7405 -3.8824 -2.9458 10 8 0.6017 -3.9253 -2.5215 11 6 2.1192 -4.6852 -4.1246 12 6 3.4273 -4.6317 -4.6160 13 6 3.7793 -5.3794 -5.7032 14 6 2.8288 -6.1894 -6.3321 15 6 3.2075 -6.9922 -7.5109 16 6 4.4361 -7.0258 -8.0690 17 6 4.5479 -7.8528 -9.1656 18 6 3.4257 -8.4948 -9.5084 19 6 3.2928 -9.4504 -10.6660 20 8 4.1072 -10.6006 -10.4300 21 14 1.5131 -9.9741 -10.8376 22 1 0.6668 -8.7787 -11.0827 23 1 1.3822 -10.9163 -11.9779 24 1 1.0720 -10.6452 -9.5885 25 16 2.1305 -8.0605 -8.4010 26 6 1.5193 -6.2382 -5.8445 27 6 1.1687 -5.4953 -4.7536 28 6 2.5043 -0.9169 -1.5044 29 1 -0.3634 0.4925 0.9019 30 1 -0.3634 0.5348 -0.8776 31 1 -0.3633 -1.0274 -0.0245 32 1 3.5917 1.7388 -0.0244 33 1 2.1243 2.2747 -0.8774 34 1 2.1641 2.2602 0.9020 35 1 3.5623 -0.6990 1.6508 36 1 1.9385 -0.6239 2.3888 37 1 2.7170 -2.9973 2.0577 38 1 1.2475 -2.6347 1.1204 39 1 4.0240 -2.3249 -0.0587 40 1 3.1624 -3.8757 -0.0958 41 1 3.5651 -3.0678 -2.6779 42 1 4.1602 -4.0025 -4.1331 43 1 4.7908 -5.3417 -6.0798 44 1 5.2658 -6.4498 -7.6867 45 1 5.4737 -7.9738 -9.7083 46 1 3.6166 -8.9578 -11.5827 47 1 4.0710 -11.2599 -11.1366 48 1 0.7852 -6.8641 -6.3301 49 1 0.1570 -5.5327 -4.3772 50 1 1.9446 -0.6158 -2.3899 51 1 3.5646 -0.7065 -1.6440 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13308390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:08:12 Heat of formation + Delta-G solvation = -4.825347 kcal Electronic energy + Delta-G solvation = -30176.976566 eV Core-core repulsion = 26099.652325 eV Total energy + Delta-G solvation = -4077.324241 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 390.135 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.49152 -40.15551 -39.07520 -38.36450 -37.39843 -35.04295 -33.69163 -32.49931 -31.53808 -30.34189 -29.31838 -28.34706 -27.57191 -27.24203 -25.26117 -24.27340 -23.87184 -23.22116 -21.88784 -21.68179 -20.12378 -19.38276 -18.64245 -18.31538 -18.19746 -17.06157 -16.78521 -16.45138 -16.30292 -15.74980 -15.64352 -15.50334 -15.10835 -14.96922 -14.77211 -14.76395 -14.52677 -14.45429 -14.32370 -14.14569 -13.96466 -13.79657 -13.49375 -13.39724 -13.32956 -13.18469 -13.11009 -13.09709 -12.97207 -12.69085 -12.39322 -12.25575 -12.12212 -12.03099 -11.96752 -11.60270 -11.40347 -10.83783 -10.79659 -10.78554 -10.38267 -10.34949 -10.23005 -10.19700 -9.68919 -9.60595 -9.05682 -0.91523 0.21757 0.29892 0.32959 0.71176 1.07263 1.37754 1.40034 1.41057 1.57856 1.82680 1.84473 1.91417 1.97960 2.16147 2.62409 2.80601 3.31330 3.38784 3.45017 3.66958 3.69782 3.80124 3.85306 4.01649 4.14162 4.17883 4.28962 4.39816 4.42485 4.46586 4.52582 4.54104 4.60539 4.68440 4.74360 4.80619 4.82077 4.85558 4.86548 4.88586 4.92702 4.99189 5.08113 5.10034 5.19107 5.25177 5.28925 5.30803 5.47089 5.48165 5.59391 5.66508 5.68667 5.82310 6.18245 6.36842 6.76114 7.46643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.094 2.906 3 C -0.453 4.453 4 C -0.413 4.413 5 C -0.104 4.104 6 C 0.026 3.974 7 N -0.303 5.303 8 N -0.571 5.571 9 C 0.571 3.429 10 O -0.560 6.560 11 C -0.145 4.145 12 C -0.067 4.067 13 C -0.106 4.106 14 C 0.008 3.992 15 C -0.157 4.157 16 C -0.112 4.112 17 C -0.107 4.107 18 C -0.183 4.183 19 C -0.034 4.034 20 O -0.558 6.558 21 Si 0.904 3.096 22 H -0.247 1.247 23 H -0.215 1.215 24 H -0.261 1.261 25 S 0.081 5.919 26 C -0.130 4.130 27 C -0.061 4.061 28 C -0.271 4.271 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.393 0.607 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.173 0.827 45 H 0.164 0.836 46 H 0.114 0.886 47 H 0.402 0.598 48 H 0.130 0.870 49 H 0.129 0.871 50 H 0.080 0.920 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.679 2.115 -2.827 8.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.282 2.718 3 C -0.561 4.561 4 C -0.499 4.499 5 C -0.143 4.143 6 C -0.102 4.102 7 N -0.119 5.119 8 N -0.316 5.316 9 C 0.360 3.640 10 O -0.438 6.438 11 C -0.150 4.150 12 C -0.086 4.086 13 C -0.125 4.125 14 C 0.006 3.994 15 C -0.274 4.274 16 C -0.143 4.143 17 C -0.137 4.137 18 C -0.300 4.300 19 C -0.148 4.148 20 O -0.368 6.368 21 Si 0.725 3.275 22 H -0.171 1.171 23 H -0.137 1.137 24 H -0.185 1.185 25 S 0.348 5.652 26 C -0.149 4.149 27 C -0.080 4.080 28 C -0.443 4.443 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.235 0.765 42 H 0.178 0.822 43 H 0.182 0.818 44 H 0.190 0.810 45 H 0.182 0.818 46 H 0.131 0.869 47 H 0.253 0.747 48 H 0.148 0.852 49 H 0.147 0.853 50 H 0.099 0.901 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.104 1.574 -1.950 4.809 hybrid contribution 2.299 0.043 -0.857 2.454 sum 6.403 1.617 -2.808 7.176 Atomic orbital electron populations 1.26364 1.23175 1.03645 1.04056 0.78281 0.64887 0.65098 0.63498 1.26131 1.06936 1.18083 1.04982 1.26433 1.07131 1.01590 1.14754 1.21205 1.00870 0.96997 0.95186 1.22598 0.96666 1.01197 0.89713 1.62932 1.53927 1.00638 0.94405 1.45370 1.12954 1.44931 1.28326 1.18349 0.84443 0.78588 0.82590 1.90760 1.21250 1.65809 1.66001 1.19958 0.96122 1.01448 0.97451 1.21244 0.94238 0.97655 0.95447 1.21189 1.00423 0.95421 0.95474 1.18455 0.93812 0.94929 0.92249 1.23058 0.97750 1.05083 1.01472 1.20701 0.96931 1.00488 0.96158 1.20264 0.99131 0.96481 0.97788 1.24148 0.97351 1.05728 1.02802 1.23904 1.06325 0.87977 0.96561 1.86473 1.68624 1.31124 1.50593 0.86157 0.75753 0.82732 0.82810 1.17091 1.13711 1.18533 1.84406 1.14924 1.41536 1.24322 1.21005 0.95968 1.00647 0.97234 1.20904 0.99705 0.93505 0.93921 1.28286 1.05831 0.92119 1.18034 0.90917 0.91949 0.92580 0.90265 0.91128 0.90416 0.89261 0.89740 0.90232 0.92085 0.91620 0.91069 0.76503 0.82208 0.81846 0.80958 0.81845 0.86889 0.74705 0.85223 0.85296 0.90128 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -0.89 8.65 113.37 0.98 0.09 16 2 Si 1.09 -4.71 11.99 68.60 0.82 -3.89 16 3 C -0.45 2.34 8.65 113.37 0.98 3.32 16 4 C -0.41 1.66 5.04 72.29 0.36 2.02 16 5 C -0.10 0.04 5.74 30.78 0.18 0.22 16 6 C 0.03 0.00 5.38 86.28 0.46 0.46 16 7 N -0.30 -1.00 4.14 -334.16 -1.38 -2.38 16 8 N -0.57 -1.54 4.65 -175.79 -0.82 -2.35 16 9 C 0.57 5.11 7.87 86.70 0.68 5.79 16 10 O -0.56 -10.27 16.65 -4.03 -0.07 -10.33 16 11 C -0.15 -0.68 5.88 -20.05 -0.12 -0.80 16 12 C -0.07 0.15 9.48 22.27 0.21 0.36 16 13 C -0.11 0.23 9.48 22.26 0.21 0.45 16 14 C 0.01 0.02 5.88 -20.05 -0.12 -0.10 16 15 C -0.16 -0.44 6.37 23.98 0.15 -0.29 16 16 C -0.11 0.06 9.64 21.42 0.21 0.27 16 17 C -0.11 -0.03 10.03 21.15 0.21 0.18 16 18 C -0.18 -0.45 5.74 24.66 0.14 -0.31 16 19 C -0.03 0.06 2.95 71.23 0.21 0.27 16 20 O -0.56 0.70 12.85 -148.98 -1.92 -1.21 16 21 Si 0.90 -0.20 26.25 68.60 1.80 1.60 16 22 H -0.25 -0.47 7.11 99.48 0.71 0.24 16 23 H -0.22 0.56 7.11 99.48 0.71 1.27 16 24 H -0.26 -1.21 7.11 99.48 0.71 -0.51 16 25 S 0.08 0.38 19.48 -56.49 -1.10 -0.72 16 26 C -0.13 -0.61 9.54 22.26 0.21 -0.40 16 27 C -0.06 -0.40 9.53 22.26 0.21 -0.19 16 28 C -0.27 0.35 4.86 127.53 0.62 0.97 16 29 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 30 H 0.06 0.16 7.96 -2.38 -0.02 0.14 16 31 H 0.05 0.36 7.96 -2.39 -0.02 0.35 16 32 H 0.08 -0.52 7.96 -2.39 -0.02 -0.54 16 33 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 34 H 0.08 -0.40 7.96 -2.39 -0.02 -0.42 16 35 H 0.09 -0.57 7.99 -2.39 -0.02 -0.59 16 36 H 0.08 -0.36 7.99 -2.39 -0.02 -0.38 16 37 H 0.08 -0.15 8.14 -2.38 -0.02 -0.17 16 38 H 0.06 0.20 7.96 -2.39 -0.02 0.18 16 39 H 0.07 -0.30 7.78 -2.39 -0.02 -0.32 16 40 H 0.07 0.10 8.03 -2.39 -0.02 0.08 16 41 H 0.39 -1.70 6.84 -215.49 -1.47 -3.18 16 42 H 0.16 -1.49 6.38 -2.92 -0.02 -1.51 16 43 H 0.16 -1.38 6.74 -2.91 -0.02 -1.40 16 44 H 0.17 -1.15 6.88 -2.91 -0.02 -1.17 16 45 H 0.16 -0.57 8.06 -2.91 -0.02 -0.59 16 46 H 0.11 -0.79 7.96 -2.39 -0.02 -0.81 16 47 H 0.40 -4.27 8.74 -74.05 -0.65 -4.92 16 48 H 0.13 0.48 7.26 -2.91 -0.02 0.46 16 49 H 0.13 1.07 7.64 -2.91 -0.02 1.05 16 50 H 0.08 0.09 7.99 -2.39 -0.02 0.07 16 51 H 0.07 -0.40 7.92 -2.39 -0.02 -0.42 16 Total: 0.00 -23.12 426.14 2.73 -20.39 By element: Atomic # 1 Polarization: -13.00 SS G_CDS: -0.41 Total: -13.42 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 5.80 Total: 12.31 kcal Atomic # 7 Polarization: -2.54 SS G_CDS: -2.20 Total: -4.74 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.98 Total: -11.55 kcal Atomic # 14 Polarization: -4.91 SS G_CDS: 2.62 Total: -2.28 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -1.10 Total: -0.72 kcal Total: -23.12 2.73 -20.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13308390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.569 kcal (2) G-P(sol) polarization free energy of solvation -23.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds