Wall clock time and date at job start Sun Mar 7 2021 09:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86295 * 109.98630 * 2 1 4 4 C 1.87526 * 109.99959 * 121.31419 * 2 1 3 5 5 C 1.53933 * 106.84771 * 163.09781 * 4 2 1 6 6 C 1.52621 * 109.31352 * 302.79771 * 5 4 2 7 7 N 1.46360 * 111.89402 * 76.51736 * 6 5 4 8 8 N 1.36603 * 111.00029 * 156.80664 * 7 6 5 9 9 C 1.34780 * 119.99511 * 235.45534 * 8 7 6 10 10 O 1.21585 * 120.00306 * 354.97876 * 9 8 7 11 11 C 1.47537 * 119.99482 * 174.97352 * 9 8 7 12 12 C 1.39668 * 120.19517 * 0.02562 * 11 9 8 13 13 C 1.37826 * 119.91017 * 180.27468 * 12 11 9 14 14 C 1.38508 * 120.29863 * 359.48959 * 13 12 11 15 15 C 1.50702 * 119.80177 * 180.23450 * 14 13 12 16 16 O 1.42905 * 109.46934 * 120.27779 * 15 14 13 17 17 Si 1.86302 * 109.47451 * 0.27962 * 15 14 13 18 18 H 1.48502 * 109.47123 * 59.99431 * 17 15 14 19 19 H 1.48495 * 109.47278 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46792 * 300.00040 * 17 15 14 21 21 C 1.38088 * 120.38793 * 0.51285 * 14 13 12 22 22 C 1.38662 * 120.08839 * 359.74552 * 21 14 13 23 23 O 1.35660 * 120.15281 * 180.02562 * 22 21 14 24 24 C 1.47724 * 111.30644 * 280.98392 * 7 6 5 25 25 H 1.08996 * 109.47088 * 298.68433 * 1 2 3 26 26 H 1.09001 * 109.46741 * 58.68728 * 1 2 3 27 27 H 1.08997 * 109.46716 * 178.68695 * 1 2 3 28 28 H 1.08991 * 109.47235 * 181.31193 * 3 2 1 29 29 H 1.09002 * 109.47342 * 301.31837 * 3 2 1 30 30 H 1.09007 * 109.47060 * 61.31108 * 3 2 1 31 31 H 1.08996 * 109.97667 * 43.76641 * 4 2 1 32 32 H 1.08999 * 110.05125 * 282.47487 * 4 2 1 33 33 H 1.09001 * 109.49956 * 182.84404 * 5 4 2 34 34 H 1.08999 * 109.49620 * 62.74657 * 5 4 2 35 35 H 1.09005 * 108.99359 * 315.89738 * 6 5 4 36 36 H 1.08997 * 108.93707 * 197.09942 * 6 5 4 37 37 H 0.96995 * 119.99930 * 55.45327 * 8 7 6 38 38 H 1.08000 * 120.04360 * 0.02562 * 12 11 9 39 39 H 1.08000 * 119.85129 * 179.75152 * 13 12 11 40 40 H 1.08998 * 109.46906 * 240.27754 * 15 14 13 41 41 H 0.96702 * 113.99497 * 300.00202 * 16 15 14 42 42 H 1.08006 * 119.95761 * 179.76421 * 21 14 13 43 43 H 0.96705 * 113.99730 * 269.97756 * 23 22 21 44 44 H 1.09004 * 109.94563 * 179.67883 * 24 7 6 45 45 H 1.08997 * 109.94726 * 300.93527 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4998 1.7507 0.0000 4 6 2.5044 -0.9159 1.5055 5 6 3.9816 -1.2491 1.2291 6 6 4.0832 -2.0637 -0.0575 7 7 3.9262 -1.2261 -1.2475 8 7 4.5043 -1.8116 -2.3379 9 6 5.4353 -1.1433 -3.0473 10 8 5.6947 0.0125 -2.7731 11 6 6.1395 -1.8143 -4.1566 12 6 5.8443 -3.1417 -4.4754 13 6 6.5099 -3.7645 -5.5092 14 6 7.4635 -3.0768 -6.2412 15 6 8.1807 -3.7672 -7.3727 16 8 7.9366 -3.0625 -8.5917 17 14 7.5552 -5.5150 -7.5299 18 1 6.0964 -5.4957 -7.8070 19 1 8.2614 -6.1950 -8.6452 20 1 7.8088 -6.2472 -6.2631 21 6 7.7651 -1.7641 -5.9367 22 6 7.1092 -1.1234 -4.8965 23 8 7.4040 0.1663 -4.5966 24 6 2.5043 -0.9182 -1.5035 25 1 -0.3633 0.4932 0.9015 26 1 -0.3633 0.5341 -0.8780 27 1 -0.3632 -1.0274 -0.0235 28 1 3.5894 1.7411 -0.0235 29 1 2.1220 2.2748 -0.8779 30 1 2.1604 2.2608 0.9016 31 1 1.9366 -1.8346 1.6523 32 1 2.4244 -0.2836 2.3897 33 1 4.3854 -1.8286 2.0594 34 1 4.5489 -0.3248 1.1202 35 1 3.3055 -2.8275 -0.0562 36 1 5.0579 -2.5502 -0.0921 37 1 4.2449 -2.7083 -2.6016 38 1 5.0985 -3.6805 -3.9099 39 1 6.2837 -4.7922 -5.7522 40 1 9.2514 -3.7813 -7.1693 41 1 7.0023 -3.0104 -8.8356 42 1 8.5127 -1.2356 -6.5097 43 1 8.1136 0.2668 -3.9473 44 1 2.4136 -0.2900 -2.3896 45 1 1.9429 -1.8421 -1.6423 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_13422076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:08:29 Heat of formation + Delta-G solvation = -83.210455 kcal Electronic energy + Delta-G solvation = -25698.468878 eV Core-core repulsion = 22033.890965 eV Total energy + Delta-G solvation = -3664.577913 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61967 -40.28283 -38.69112 -37.95783 -37.15405 -34.91262 -33.15667 -31.17532 -31.13405 -29.41166 -28.39737 -27.69307 -27.45784 -24.97722 -23.95201 -23.21298 -21.95582 -21.48789 -19.57265 -18.78202 -18.37063 -18.15444 -16.90193 -16.71650 -16.40661 -16.29896 -16.15980 -15.51511 -15.35894 -15.20595 -14.87317 -14.81593 -14.57432 -14.37583 -14.09878 -13.90443 -13.83882 -13.58033 -13.34587 -13.25835 -13.14238 -13.01634 -12.89007 -12.46635 -12.21100 -12.11570 -12.10692 -12.05389 -11.58004 -11.26220 -10.86349 -10.70777 -10.54077 -10.37942 -10.13216 -10.04603 -9.79743 -9.71954 -0.39734 0.09146 1.00780 1.32235 1.37479 1.39152 1.72704 1.79990 1.81037 1.85168 2.06143 2.53747 2.62769 3.10921 3.30206 3.36686 3.42735 3.61760 3.71698 3.90929 3.94514 4.08910 4.20664 4.36328 4.37357 4.45145 4.55721 4.58239 4.64047 4.65988 4.67871 4.70106 4.81720 4.89459 4.94364 4.94794 4.98917 5.10248 5.17819 5.20865 5.34626 5.42035 5.52160 5.70434 5.76233 6.31953 6.41813 6.45910 6.73300 7.59846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.031 2.969 3 C -0.443 4.443 4 C -0.410 4.410 5 C -0.100 4.100 6 C 0.026 3.974 7 N -0.274 5.274 8 N -0.586 5.586 9 C 0.573 3.427 10 O -0.491 6.491 11 C -0.160 4.160 12 C -0.066 4.066 13 C -0.144 4.144 14 C -0.077 4.077 15 C -0.086 4.086 16 O -0.535 6.535 17 Si 0.952 3.048 18 H -0.250 1.250 19 H -0.252 1.252 20 H -0.249 1.249 21 C -0.126 4.126 22 C 0.175 3.825 23 O -0.475 6.475 24 C -0.261 4.261 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.375 0.625 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.378 0.622 42 H 0.143 0.857 43 H 0.399 0.601 44 H 0.091 0.909 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 -5.019 1.547 5.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.224 2.776 3 C -0.551 4.551 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.102 4.102 7 N -0.090 5.090 8 N -0.332 5.332 9 C 0.360 3.640 10 O -0.363 6.363 11 C -0.165 4.165 12 C -0.085 4.085 13 C -0.162 4.162 14 C -0.078 4.078 15 C -0.196 4.196 16 O -0.340 6.340 17 Si 0.774 3.226 18 H -0.174 1.174 19 H -0.175 1.175 20 H -0.173 1.173 21 C -0.144 4.144 22 C 0.128 3.872 23 O -0.287 6.287 24 C -0.434 4.434 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.214 0.786 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.226 0.774 42 H 0.161 0.839 43 H 0.257 0.743 44 H 0.109 0.891 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.030 -4.417 1.335 4.728 hybrid contribution -0.760 -1.076 0.103 1.321 sum -1.789 -5.493 1.438 5.953 Atomic orbital electron populations 1.26119 1.20374 1.04507 1.04839 0.79215 0.65847 0.67773 0.64754 1.26020 1.07343 1.17677 1.04087 1.26379 1.00691 1.08095 1.14430 1.21185 0.96661 1.01108 0.94915 1.22567 1.02179 0.95243 0.90214 1.62961 1.13892 1.38264 0.93876 1.45515 1.42047 1.17768 1.27842 1.17821 0.78894 0.86120 0.81164 1.90816 1.63072 1.15504 1.66903 1.20410 1.02089 0.94928 0.99066 1.21119 0.98135 0.92882 0.96332 1.20966 0.97686 1.00242 0.97323 1.20422 0.95970 0.94605 0.96803 1.25099 1.04810 1.06214 0.83522 1.86545 1.31149 1.78182 1.38130 0.85644 0.80591 0.74816 0.81546 1.17352 1.17544 1.17285 1.21337 1.00938 0.94131 0.97999 1.18484 0.92556 0.83657 0.92505 1.84770 1.59449 1.19873 1.64569 1.28089 0.90951 1.06916 1.17453 0.90703 0.91043 0.91269 0.90309 0.91340 0.91397 0.90708 0.90052 0.90808 0.90219 0.93664 0.90122 0.78569 0.85152 0.85372 0.85908 0.77425 0.83873 0.74259 0.89077 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.74 8.65 101.05 0.87 1.62 16 2 Si 1.03 -1.95 11.99 -169.99 -2.04 -3.98 16 3 C -0.44 -0.12 8.65 101.05 0.87 0.75 16 4 C -0.41 0.73 5.03 37.64 0.19 0.92 16 5 C -0.10 0.09 5.74 -26.44 -0.15 -0.06 16 6 C 0.03 -0.02 5.38 -4.31 -0.02 -0.04 16 7 N -0.27 -0.34 4.15 -56.97 -0.24 -0.57 16 8 N -0.59 -0.61 4.66 30.46 0.14 -0.47 16 9 C 0.57 1.99 7.87 -12.47 -0.10 1.89 16 10 O -0.49 -3.54 15.49 -16.58 -0.26 -3.79 16 11 C -0.16 -0.25 5.89 -104.84 -0.62 -0.87 16 12 C -0.07 0.06 9.53 -39.20 -0.37 -0.31 16 13 C -0.14 0.17 8.65 -39.63 -0.34 -0.17 16 14 C -0.08 0.05 5.39 -104.58 -0.56 -0.51 16 15 C -0.09 0.14 2.81 36.01 0.10 0.24 16 16 O -0.53 0.29 12.76 -35.23 -0.45 -0.16 16 17 Si 0.95 -1.82 25.05 -169.99 -4.26 -6.08 16 18 H -0.25 0.44 7.11 56.52 0.40 0.84 16 19 H -0.25 0.05 7.11 56.52 0.40 0.45 16 20 H -0.25 0.40 7.11 56.52 0.40 0.81 16 21 C -0.13 -0.06 9.53 -39.48 -0.38 -0.44 16 22 C 0.17 0.35 6.72 -38.70 -0.26 0.09 16 23 O -0.48 -1.40 11.58 -40.55 -0.47 -1.86 16 24 C -0.26 0.03 4.86 60.52 0.29 0.32 16 25 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 28 H 0.08 0.14 7.96 -51.93 -0.41 -0.27 16 29 H 0.07 0.05 7.96 -51.93 -0.41 -0.37 16 30 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 31 H 0.07 -0.17 7.99 -51.93 -0.42 -0.58 16 32 H 0.08 -0.16 7.99 -51.93 -0.42 -0.57 16 33 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 34 H 0.08 0.01 7.96 -51.93 -0.41 -0.40 16 35 H 0.05 -0.08 7.78 -51.93 -0.40 -0.48 16 36 H 0.08 -0.05 8.03 -51.93 -0.42 -0.46 16 37 H 0.38 -0.64 6.87 -185.16 -1.27 -1.92 16 38 H 0.13 -0.48 6.42 -52.49 -0.34 -0.81 16 39 H 0.13 -0.36 4.85 -52.49 -0.25 -0.61 16 40 H 0.12 -0.31 7.96 -51.93 -0.41 -0.73 16 41 H 0.38 -1.37 8.70 45.56 0.40 -0.97 16 42 H 0.14 0.00 8.06 -52.48 -0.42 -0.43 16 43 H 0.40 -0.32 9.06 45.56 0.41 0.09 16 44 H 0.09 0.11 7.99 -51.93 -0.41 -0.31 16 45 H 0.05 -0.07 7.92 -51.93 -0.41 -0.48 16 LS Contribution 365.20 15.07 5.50 5.50 Total: 0.00 -8.76 365.20 -9.02 -17.77 By element: Atomic # 1 Polarization: -3.30 SS G_CDS: -6.48 Total: -9.78 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -0.47 Total: 3.43 kcal Atomic # 7 Polarization: -0.95 SS G_CDS: -0.09 Total: -1.04 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -1.18 Total: -5.82 kcal Atomic # 14 Polarization: -3.77 SS G_CDS: -6.30 Total: -10.07 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -8.76 -9.02 -17.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13422076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.437 kcal (2) G-P(sol) polarization free energy of solvation -8.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds