Wall clock time and date at job start Sun Mar 7 2021 09:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86295 * 109.98630 * 2 1 4 4 C 1.87526 * 109.99959 * 121.31419 * 2 1 3 5 5 C 1.53933 * 106.84771 * 163.09781 * 4 2 1 6 6 C 1.52621 * 109.31352 * 302.79771 * 5 4 2 7 7 N 1.46360 * 111.89402 * 76.51736 * 6 5 4 8 8 N 1.36603 * 111.00029 * 156.80664 * 7 6 5 9 9 C 1.34780 * 119.99511 * 235.45534 * 8 7 6 10 10 O 1.21585 * 120.00306 * 354.97876 * 9 8 7 11 11 C 1.47537 * 119.99482 * 174.97352 * 9 8 7 12 12 C 1.39668 * 120.19517 * 0.02562 * 11 9 8 13 13 C 1.37826 * 119.91017 * 180.27468 * 12 11 9 14 14 C 1.38508 * 120.29863 * 359.48959 * 13 12 11 15 15 C 1.50702 * 119.80177 * 180.23450 * 14 13 12 16 16 O 1.42905 * 109.46934 * 120.27779 * 15 14 13 17 17 Si 1.86302 * 109.47451 * 0.27962 * 15 14 13 18 18 H 1.48502 * 109.47123 * 59.99431 * 17 15 14 19 19 H 1.48495 * 109.47278 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46792 * 300.00040 * 17 15 14 21 21 C 1.38088 * 120.38793 * 0.51285 * 14 13 12 22 22 C 1.38662 * 120.08839 * 359.74552 * 21 14 13 23 23 O 1.35660 * 120.15281 * 180.02562 * 22 21 14 24 24 C 1.47724 * 111.30644 * 280.98392 * 7 6 5 25 25 H 1.08996 * 109.47088 * 298.68433 * 1 2 3 26 26 H 1.09001 * 109.46741 * 58.68728 * 1 2 3 27 27 H 1.08997 * 109.46716 * 178.68695 * 1 2 3 28 28 H 1.08991 * 109.47235 * 181.31193 * 3 2 1 29 29 H 1.09002 * 109.47342 * 301.31837 * 3 2 1 30 30 H 1.09007 * 109.47060 * 61.31108 * 3 2 1 31 31 H 1.08996 * 109.97667 * 43.76641 * 4 2 1 32 32 H 1.08999 * 110.05125 * 282.47487 * 4 2 1 33 33 H 1.09001 * 109.49956 * 182.84404 * 5 4 2 34 34 H 1.08999 * 109.49620 * 62.74657 * 5 4 2 35 35 H 1.09005 * 108.99359 * 315.89738 * 6 5 4 36 36 H 1.08997 * 108.93707 * 197.09942 * 6 5 4 37 37 H 0.96995 * 119.99930 * 55.45327 * 8 7 6 38 38 H 1.08000 * 120.04360 * 0.02562 * 12 11 9 39 39 H 1.08000 * 119.85129 * 179.75152 * 13 12 11 40 40 H 1.08998 * 109.46906 * 240.27754 * 15 14 13 41 41 H 0.96702 * 113.99497 * 300.00202 * 16 15 14 42 42 H 1.08006 * 119.95761 * 179.76421 * 21 14 13 43 43 H 0.96705 * 113.99730 * 269.97756 * 23 22 21 44 44 H 1.09004 * 109.94563 * 179.67883 * 24 7 6 45 45 H 1.08997 * 109.94726 * 300.93527 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4998 1.7507 0.0000 4 6 2.5044 -0.9159 1.5055 5 6 3.9816 -1.2491 1.2291 6 6 4.0832 -2.0637 -0.0575 7 7 3.9262 -1.2261 -1.2475 8 7 4.5043 -1.8116 -2.3379 9 6 5.4353 -1.1433 -3.0473 10 8 5.6947 0.0125 -2.7731 11 6 6.1395 -1.8143 -4.1566 12 6 5.8443 -3.1417 -4.4754 13 6 6.5099 -3.7645 -5.5092 14 6 7.4635 -3.0768 -6.2412 15 6 8.1807 -3.7672 -7.3727 16 8 7.9366 -3.0625 -8.5917 17 14 7.5552 -5.5150 -7.5299 18 1 6.0964 -5.4957 -7.8070 19 1 8.2614 -6.1950 -8.6452 20 1 7.8088 -6.2472 -6.2631 21 6 7.7651 -1.7641 -5.9367 22 6 7.1092 -1.1234 -4.8965 23 8 7.4040 0.1663 -4.5966 24 6 2.5043 -0.9182 -1.5035 25 1 -0.3633 0.4932 0.9015 26 1 -0.3633 0.5341 -0.8780 27 1 -0.3632 -1.0274 -0.0235 28 1 3.5894 1.7411 -0.0235 29 1 2.1220 2.2748 -0.8779 30 1 2.1604 2.2608 0.9016 31 1 1.9366 -1.8346 1.6523 32 1 2.4244 -0.2836 2.3897 33 1 4.3854 -1.8286 2.0594 34 1 4.5489 -0.3248 1.1202 35 1 3.3055 -2.8275 -0.0562 36 1 5.0579 -2.5502 -0.0921 37 1 4.2449 -2.7083 -2.6016 38 1 5.0985 -3.6805 -3.9099 39 1 6.2837 -4.7922 -5.7522 40 1 9.2514 -3.7813 -7.1693 41 1 7.0023 -3.0104 -8.8356 42 1 8.5127 -1.2356 -6.5097 43 1 8.1136 0.2668 -3.9473 44 1 2.4136 -0.2900 -2.3896 45 1 1.9429 -1.8421 -1.6423 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13422076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:08:28 Heat of formation + Delta-G solvation = -81.424088 kcal Electronic energy + Delta-G solvation = -25698.391415 eV Core-core repulsion = 22033.890965 eV Total energy + Delta-G solvation = -3664.500450 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70019 -40.33238 -38.72745 -38.08800 -37.14353 -34.94823 -33.16341 -31.18860 -31.14768 -29.33497 -28.35811 -27.64695 -27.39786 -24.95961 -23.92567 -23.23009 -21.89971 -21.60303 -19.62348 -18.83567 -18.36881 -18.16360 -16.92909 -16.74269 -16.43650 -16.24029 -16.16664 -15.53496 -15.35266 -15.13657 -14.92618 -14.75760 -14.60353 -14.34124 -13.97461 -13.89572 -13.80577 -13.50180 -13.32969 -13.19982 -13.11904 -12.98994 -12.88189 -12.36739 -12.14945 -12.04982 -12.02757 -11.95739 -11.56490 -11.30057 -10.81245 -10.78995 -10.49849 -10.32522 -10.21336 -10.03990 -9.80808 -9.69461 -0.43156 0.11436 1.15805 1.41768 1.49571 1.53364 1.72450 1.83370 1.91422 1.94553 2.14522 2.56038 2.61980 3.11450 3.31704 3.46861 3.54141 3.66146 3.77529 4.00404 4.03173 4.17034 4.25093 4.40866 4.44990 4.54468 4.64493 4.68736 4.72559 4.75678 4.79400 4.81195 4.84300 4.84505 4.91891 4.97942 5.09193 5.12236 5.20645 5.31347 5.47919 5.56614 5.57551 5.65427 5.82228 6.20088 6.39654 6.66666 6.71506 7.49428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.091 2.909 3 C -0.466 4.466 4 C -0.410 4.410 5 C -0.103 4.103 6 C 0.026 3.974 7 N -0.300 5.300 8 N -0.575 5.575 9 C 0.570 3.430 10 O -0.542 6.542 11 C -0.176 4.176 12 C -0.055 4.055 13 C -0.144 4.144 14 C -0.071 4.071 15 C -0.089 4.089 16 O -0.552 6.552 17 Si 0.987 3.013 18 H -0.246 1.246 19 H -0.279 1.279 20 H -0.247 1.247 21 C -0.133 4.133 22 C 0.157 3.843 23 O -0.497 6.497 24 C -0.273 4.273 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.391 0.609 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.130 0.870 41 H 0.390 0.610 42 H 0.143 0.857 43 H 0.408 0.592 44 H 0.071 0.929 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.649 -7.337 1.999 8.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.280 2.720 3 C -0.571 4.571 4 C -0.496 4.496 5 C -0.142 4.142 6 C -0.102 4.102 7 N -0.117 5.117 8 N -0.321 5.321 9 C 0.358 3.642 10 O -0.418 6.418 11 C -0.181 4.181 12 C -0.074 4.074 13 C -0.161 4.161 14 C -0.072 4.072 15 C -0.199 4.199 16 O -0.359 6.359 17 Si 0.810 3.190 18 H -0.170 1.170 19 H -0.204 1.204 20 H -0.171 1.171 21 C -0.151 4.151 22 C 0.110 3.890 23 O -0.310 6.310 24 C -0.444 4.444 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.232 0.768 38 H 0.178 0.822 39 H 0.168 0.832 40 H 0.148 0.852 41 H 0.240 0.760 42 H 0.160 0.840 43 H 0.268 0.732 44 H 0.090 0.910 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.267 -6.742 1.785 7.333 hybrid contribution -0.339 -0.347 -0.083 0.492 sum -2.606 -7.089 1.702 7.742 Atomic orbital electron populations 1.26150 1.20069 1.05129 1.04907 0.78313 0.65206 0.64814 0.63661 1.26352 1.06030 1.20811 1.03912 1.26387 1.00022 1.08832 1.14404 1.21211 0.97274 1.00498 0.95191 1.22600 1.02768 0.95391 0.89410 1.62938 1.14713 1.39606 0.94403 1.45382 1.41148 1.18132 1.27423 1.18190 0.78926 0.85707 0.81398 1.90783 1.64855 1.17627 1.68509 1.20392 1.02564 0.96085 0.99101 1.21405 0.98121 0.91699 0.96171 1.21226 0.97021 1.01106 0.96793 1.20596 0.95762 0.94045 0.96813 1.25262 1.05358 1.06453 0.82803 1.86516 1.32490 1.78447 1.38486 0.85148 0.80094 0.73397 0.80354 1.16969 1.20417 1.17064 1.21349 1.01169 0.94803 0.97805 1.18737 0.93374 0.83505 0.93370 1.84723 1.60173 1.21029 1.65109 1.28297 0.90549 1.07790 1.17759 0.90328 0.91367 0.90319 0.92468 0.92293 0.90837 0.89228 0.89608 0.89877 0.91950 0.91717 0.90341 0.76777 0.82234 0.83222 0.85243 0.76045 0.83970 0.73193 0.90974 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.99 8.65 113.37 0.98 2.97 16 2 Si 1.09 -4.16 11.99 68.60 0.82 -3.34 16 3 C -0.47 -1.16 8.65 113.37 0.98 -0.18 16 4 C -0.41 1.91 5.03 72.30 0.36 2.27 16 5 C -0.10 0.20 5.74 30.78 0.18 0.38 16 6 C 0.03 -0.04 5.38 86.28 0.46 0.42 16 7 N -0.30 -0.90 4.15 -334.14 -1.39 -2.29 16 8 N -0.58 -1.42 4.66 -175.81 -0.82 -2.24 16 9 C 0.57 4.88 7.87 86.70 0.68 5.56 16 10 O -0.54 -9.44 15.49 16.93 0.26 -9.18 16 11 C -0.18 -0.71 5.89 -20.01 -0.12 -0.83 16 12 C -0.06 0.16 9.53 22.52 0.21 0.38 16 13 C -0.14 0.56 8.65 22.24 0.19 0.75 16 14 C -0.07 0.12 5.39 -19.84 -0.11 0.02 16 15 C -0.09 0.34 2.81 71.24 0.20 0.54 16 16 O -0.55 0.68 12.76 -148.98 -1.90 -1.22 16 17 Si 0.99 -4.97 25.05 68.60 1.72 -3.25 16 18 H -0.25 1.37 7.11 99.48 0.71 2.08 16 19 H -0.28 0.12 7.11 99.48 0.71 0.82 16 20 H -0.25 1.30 7.11 99.48 0.71 2.01 16 21 C -0.13 -0.26 9.53 22.34 0.21 -0.05 16 22 C 0.16 0.89 6.72 22.84 0.15 1.05 16 23 O -0.50 -4.34 11.58 -68.85 -0.80 -5.14 16 24 C -0.27 0.02 4.86 127.53 0.62 0.64 16 25 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 26 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 27 H 0.08 -0.46 7.96 -2.39 -0.02 -0.47 16 28 H 0.06 0.38 7.96 -2.39 -0.02 0.37 16 29 H 0.06 0.23 7.96 -2.39 -0.02 0.21 16 30 H 0.07 0.05 7.96 -2.38 -0.02 0.03 16 31 H 0.09 -0.63 7.99 -2.39 -0.02 -0.64 16 32 H 0.09 -0.43 7.99 -2.39 -0.02 -0.45 16 33 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 34 H 0.06 0.10 7.96 -2.39 -0.02 0.08 16 35 H 0.06 -0.36 7.78 -2.38 -0.02 -0.38 16 36 H 0.08 -0.11 8.03 -2.39 -0.02 -0.13 16 37 H 0.39 -1.69 6.87 -215.50 -1.48 -3.17 16 38 H 0.16 -1.53 6.42 -2.91 -0.02 -1.55 16 39 H 0.15 -1.23 4.85 -2.91 -0.01 -1.24 16 40 H 0.13 -0.70 7.96 -2.39 -0.02 -0.72 16 41 H 0.39 -2.93 8.70 -74.06 -0.64 -3.57 16 42 H 0.14 0.21 8.06 -2.91 -0.02 0.18 16 43 H 0.41 0.69 9.06 -74.05 -0.67 0.02 16 44 H 0.07 0.27 7.99 -2.38 -0.02 0.25 16 45 H 0.07 -0.28 7.92 -2.39 -0.02 -0.30 16 Total: 0.00 -22.20 365.20 1.90 -20.30 By element: Atomic # 1 Polarization: -6.54 SS G_CDS: -1.02 Total: -7.55 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 5.02 Total: 13.91 kcal Atomic # 7 Polarization: -2.32 SS G_CDS: -2.20 Total: -4.53 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -2.44 Total: -15.53 kcal Atomic # 14 Polarization: -9.14 SS G_CDS: 2.54 Total: -6.60 kcal Total: -22.20 1.90 -20.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13422076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.124 kcal (2) G-P(sol) polarization free energy of solvation -22.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds