Wall clock time and date at job start Sun Mar 7 2021 09:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38500 * 119.84619 * 2 1 4 4 C 1.38103 * 120.38883 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.95649 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.46904 * 105.00237 * 5 4 3 7 7 Si 1.86292 * 109.47459 * 344.99933 * 5 4 3 8 8 H 1.48505 * 109.47325 * 59.99871 * 7 5 4 9 9 H 1.48503 * 109.47122 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47189 * 299.99956 * 7 5 4 11 11 C 1.38669 * 120.08253 * 359.97438 * 4 3 2 12 12 O 1.35659 * 120.14973 * 180.02562 * 11 4 3 13 13 C 1.40168 * 119.70018 * 0.02562 * 11 4 3 14 14 C 1.47543 * 120.19009 * 180.02562 * 13 11 4 15 15 O 1.21589 * 119.99815 * 0.02562 * 14 13 11 16 16 N 1.34771 * 119.99932 * 180.02562 * 14 13 11 17 17 N 1.36601 * 120.00101 * 174.97547 * 16 14 13 18 18 C 1.46352 * 111.00244 * 235.45158 * 17 16 14 19 19 C 1.52620 * 111.89246 * 156.80258 * 18 17 16 20 20 C 1.53923 * 109.31325 * 76.52509 * 19 18 17 21 21 Si 1.87525 * 106.84810 * 302.79518 * 20 19 18 22 22 C 1.86302 * 110.00382 * 163.09864 * 21 20 19 23 23 C 1.86303 * 110.00422 * 284.40100 * 21 20 19 24 24 C 1.47723 * 111.00162 * 111.10085 * 17 16 14 25 25 C 1.37823 * 119.84912 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47490 * 90.00505 * 1 2 3 27 27 H 1.09008 * 109.47055 * 209.99764 * 1 2 3 28 28 H 1.08992 * 109.47352 * 329.99995 * 1 2 3 29 29 H 1.08004 * 119.80719 * 0.27653 * 3 2 1 30 30 H 1.09003 * 109.47220 * 224.99494 * 5 4 3 31 31 H 0.96706 * 113.99957 * 299.99391 * 6 5 4 32 32 H 0.96699 * 113.99892 * 89.99580 * 12 11 4 33 33 H 0.97007 * 120.00136 * 354.97324 * 16 14 13 34 34 H 1.09001 * 109.00063 * 277.42846 * 18 17 16 35 35 H 1.09001 * 108.99616 * 36.25870 * 18 17 16 36 36 H 1.09004 * 109.49993 * 196.47233 * 19 18 17 37 37 H 1.09000 * 109.50106 * 316.57100 * 19 18 17 38 38 H 1.09003 * 109.98127 * 62.12758 * 20 19 18 39 39 H 1.09004 * 109.98129 * 183.36850 * 20 19 18 40 40 H 1.09000 * 109.47320 * 59.99765 * 22 21 20 41 41 H 1.08999 * 109.47404 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.47102 * 299.99812 * 22 21 20 43 43 H 1.09000 * 109.46611 * 59.99993 * 23 21 20 44 44 H 1.09000 * 109.47142 * 179.97438 * 23 21 20 45 45 H 1.08998 * 109.47049 * 299.99903 * 23 21 20 46 46 H 1.08999 * 109.94955 * 303.86049 * 24 17 16 47 47 H 1.09003 * 109.94923 * 65.11249 * 24 17 16 48 48 H 1.08001 * 120.05325 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2013 0.0000 4 6 3.5773 1.2144 -0.0005 5 6 4.3174 2.5271 -0.0011 6 8 4.8556 2.7710 1.3000 7 14 3.1444 3.9012 -0.4556 8 1 2.0392 3.9565 0.5348 9 1 3.8736 5.1948 -0.4555 10 1 2.5851 3.6477 -1.8077 11 6 4.2837 0.0211 -0.0005 12 8 5.6402 0.0324 -0.0005 13 6 3.5897 -1.1967 -0.0005 14 6 4.3305 -2.4728 0.0000 15 8 5.5464 -2.4698 0.0010 16 7 3.6594 -3.6415 -0.0005 17 7 4.3413 -4.8206 -0.1036 18 6 3.8497 -5.6141 -1.2308 19 6 4.8952 -6.6103 -1.7244 20 6 4.9611 -7.8023 -0.7529 21 14 5.3524 -7.1012 0.9418 22 6 4.9569 -8.3585 2.2585 23 6 7.1515 -6.6261 1.0351 24 6 4.2737 -5.5835 1.1596 25 6 2.1930 -1.1954 0.0005 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6506 2.1334 0.0045 30 1 5.1286 2.4865 -0.7280 31 1 4.1887 2.8197 1.9987 32 1 6.0335 0.0357 0.8829 33 1 2.6920 -3.6454 0.0724 34 1 2.9590 -6.1596 -0.9192 35 1 3.5863 -4.9433 -2.0487 36 1 4.6193 -6.9652 -2.7175 37 1 5.8693 -6.1232 -1.7693 38 1 4.0009 -8.3177 -0.7299 39 1 5.7463 -8.4921 -1.0624 40 1 5.5538 -9.2558 2.0951 41 1 5.1870 -7.9423 3.2392 42 1 3.8981 -8.6130 2.2115 43 1 7.3682 -5.8736 0.2769 44 1 7.3692 -6.2196 2.0227 45 1 7.7694 -7.5068 0.8600 46 1 4.6496 -4.9750 1.9821 47 1 3.2448 -5.8839 1.3581 48 1 1.6514 -2.1298 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_13422088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:08:46 Heat of formation + Delta-G solvation = -89.017826 kcal Electronic energy + Delta-G solvation = -28017.160875 eV Core-core repulsion = 24196.793516 eV Total energy + Delta-G solvation = -3820.367358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.69879 -40.34844 -38.37567 -37.94320 -37.48657 -34.89895 -33.23669 -33.07631 -31.09303 -29.40610 -28.39248 -27.69172 -27.60736 -26.78872 -25.74753 -23.97226 -22.16689 -21.79909 -21.33073 -19.59834 -18.65176 -18.31757 -17.62030 -17.09437 -16.88625 -16.65494 -16.16837 -15.71041 -15.42984 -15.34812 -14.99191 -14.87323 -14.76832 -14.62596 -14.53204 -14.35992 -14.08926 -13.83370 -13.78411 -13.57514 -13.36419 -13.26090 -13.13828 -13.11293 -13.01853 -12.64314 -12.29633 -12.13805 -12.09179 -12.03644 -11.77975 -11.63002 -11.24335 -10.85647 -10.67913 -10.44728 -10.31020 -10.16238 -10.03119 -9.70247 -9.52701 -0.32315 0.04413 1.08009 1.33770 1.39011 1.47591 1.73574 1.81738 1.84809 1.87283 2.07806 2.54349 2.64544 3.22205 3.34361 3.37603 3.50321 3.59658 3.63112 3.93351 4.02602 4.04649 4.13886 4.25577 4.37873 4.47762 4.50815 4.52523 4.56020 4.59823 4.64920 4.66265 4.70447 4.73465 4.81801 4.89582 4.90225 4.93603 4.95375 5.01838 5.16194 5.23319 5.28528 5.36579 5.42144 5.56212 5.71164 5.78351 6.34528 6.48523 6.49027 6.82659 7.62844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.097 4.097 3 C -0.087 4.087 4 C -0.152 4.152 5 C -0.076 4.076 6 O -0.535 6.535 7 Si 0.951 3.049 8 H -0.252 1.252 9 H -0.250 1.250 10 H -0.248 1.248 11 C 0.196 3.804 12 O -0.470 6.470 13 C -0.159 4.159 14 C 0.574 3.426 15 O -0.490 6.490 16 N -0.586 5.586 17 N -0.274 5.274 18 C 0.026 3.974 19 C -0.100 4.100 20 C -0.410 4.410 21 Si 1.031 2.969 22 C -0.450 4.450 23 C -0.443 4.443 24 C -0.260 4.260 25 C -0.069 4.069 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.374 0.626 32 H 0.400 0.600 33 H 0.375 0.625 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.052 0.948 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.162 -1.510 1.514 6.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.097 4.097 3 C -0.105 4.105 4 C -0.153 4.153 5 C -0.186 4.186 6 O -0.340 6.340 7 Si 0.773 3.227 8 H -0.176 1.176 9 H -0.174 1.174 10 H -0.171 1.171 11 C 0.148 3.852 12 O -0.282 6.282 13 C -0.164 4.164 14 C 0.361 3.639 15 O -0.362 6.362 16 N -0.332 5.332 17 N -0.090 5.090 18 C -0.102 4.102 19 C -0.139 4.139 20 C -0.496 4.496 21 Si 1.224 2.776 22 C -0.558 4.558 23 C -0.551 4.551 24 C -0.433 4.433 25 C -0.087 4.087 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.221 0.779 32 H 0.260 0.740 33 H 0.214 0.786 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.070 0.930 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.862 -0.667 0.249 4.913 hybrid contribution -1.727 -0.705 1.076 2.154 sum -6.589 -1.372 1.325 6.859 Atomic orbital electron populations 1.20836 0.90122 1.03407 1.02996 1.19762 0.96688 0.92289 1.00968 1.21140 0.93026 0.98496 0.97872 1.20655 0.93822 0.95973 1.04837 1.24944 1.05715 0.98486 0.89500 1.86560 1.37028 1.94322 1.16087 0.85691 0.77587 0.78141 0.81252 1.17591 1.17384 1.17128 1.18158 0.84052 0.89460 0.93495 1.84689 1.13943 1.95827 1.33735 1.20380 0.93837 0.93353 1.08864 1.17800 0.87355 0.81830 0.76953 1.90819 1.12718 1.86623 1.46042 1.45507 1.07769 1.02659 1.77233 1.62948 1.46177 0.96644 1.03199 1.22564 0.97666 0.96309 0.93656 1.21184 0.99779 0.94141 0.98787 1.26382 1.05330 1.02189 1.15698 0.79220 0.67444 0.64081 0.66883 1.26119 1.05198 1.11881 1.12622 1.26020 1.18527 1.05597 1.04978 1.28082 1.08556 1.12380 0.94314 1.21123 0.92209 0.98163 0.97245 0.90580 0.91083 0.91053 0.85070 0.85837 0.77908 0.74041 0.78604 0.93679 0.90107 0.90804 0.90192 0.90724 0.90062 0.90702 0.91061 0.91274 0.90278 0.91372 0.91393 0.89140 0.92998 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.36 10.00 36.01 0.36 0.72 16 2 C -0.10 0.09 5.87 -104.68 -0.61 -0.52 16 3 C -0.09 0.04 8.30 -39.53 -0.33 -0.29 16 4 C -0.15 -0.11 5.27 -104.51 -0.55 -0.66 16 5 C -0.08 0.00 2.38 36.00 0.09 0.08 16 6 O -0.54 -0.03 12.88 -35.23 -0.45 -0.48 16 7 Si 0.95 -0.76 25.49 -169.99 -4.33 -5.09 16 8 H -0.25 0.37 6.72 56.52 0.38 0.75 16 9 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 10 H -0.25 0.00 7.11 56.52 0.40 0.40 16 11 C 0.20 0.49 6.69 -38.70 -0.26 0.24 16 12 O -0.47 -1.74 10.91 -40.55 -0.44 -2.18 16 13 C -0.16 -0.32 5.89 -104.84 -0.62 -0.94 16 14 C 0.57 2.20 7.87 -12.47 -0.10 2.10 16 15 O -0.49 -3.71 15.49 -16.59 -0.26 -3.97 16 16 N -0.59 -0.77 4.66 30.46 0.14 -0.63 16 17 N -0.27 -0.40 4.15 -56.97 -0.24 -0.64 16 18 C 0.03 0.00 5.37 -4.32 -0.02 -0.03 16 19 C -0.10 0.05 5.74 -26.45 -0.15 -0.11 16 20 C -0.41 0.64 5.03 37.64 0.19 0.82 16 21 Si 1.03 -1.91 11.99 -169.99 -2.04 -3.95 16 22 C -0.45 0.77 8.65 101.05 0.87 1.64 16 23 C -0.44 -0.13 8.65 101.05 0.87 0.74 16 24 C -0.26 0.05 4.86 60.52 0.29 0.34 16 25 C -0.07 0.04 9.18 -39.20 -0.36 -0.32 16 26 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 27 H 0.07 -0.28 8.08 -51.92 -0.42 -0.70 16 28 H 0.07 -0.25 8.08 -51.93 -0.42 -0.67 16 29 H 0.13 -0.26 4.86 -52.48 -0.26 -0.51 16 30 H 0.12 0.08 7.83 -51.93 -0.41 -0.33 16 31 H 0.37 -1.29 8.70 45.56 0.40 -0.89 16 32 H 0.40 0.40 9.06 45.56 0.41 0.81 16 33 H 0.37 -0.54 6.87 -185.15 -1.27 -1.81 16 34 H 0.04 -0.07 7.78 -51.93 -0.40 -0.47 16 35 H 0.08 0.01 8.03 -51.93 -0.42 -0.41 16 36 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 37 H 0.08 0.05 7.96 -51.93 -0.41 -0.36 16 38 H 0.07 -0.15 7.99 -51.93 -0.42 -0.57 16 39 H 0.08 -0.14 8.00 -51.93 -0.42 -0.56 16 40 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 41 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 42 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 43 H 0.08 0.15 7.96 -51.93 -0.41 -0.26 16 44 H 0.07 0.04 7.96 -51.93 -0.41 -0.38 16 45 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 46 H 0.09 0.07 7.99 -51.93 -0.41 -0.34 16 47 H 0.05 -0.07 7.92 -51.93 -0.41 -0.48 16 48 H 0.13 -0.40 6.42 -52.49 -0.34 -0.74 16 LS Contribution 385.89 15.07 5.82 5.82 Total: 0.00 -8.37 385.89 -9.46 -17.84 By element: Atomic # 1 Polarization: -3.20 SS G_CDS: -7.34 Total: -10.53 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.32 Total: 3.82 kcal Atomic # 7 Polarization: -1.17 SS G_CDS: -0.09 Total: -1.27 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -1.15 Total: -6.63 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: -6.37 Total: -9.04 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -8.37 -9.46 -17.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13422088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.180 kcal (2) G-P(sol) polarization free energy of solvation -8.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds