Wall clock time and date at job start Sun Mar 7 2021 09:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38500 * 119.84619 * 2 1 4 4 C 1.38103 * 120.38883 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.95649 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.46904 * 105.00237 * 5 4 3 7 7 Si 1.86292 * 109.47459 * 344.99933 * 5 4 3 8 8 H 1.48505 * 109.47325 * 59.99871 * 7 5 4 9 9 H 1.48503 * 109.47122 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47189 * 299.99956 * 7 5 4 11 11 C 1.38669 * 120.08253 * 359.97438 * 4 3 2 12 12 O 1.35659 * 120.14973 * 180.02562 * 11 4 3 13 13 C 1.40168 * 119.70018 * 0.02562 * 11 4 3 14 14 C 1.47543 * 120.19009 * 180.02562 * 13 11 4 15 15 O 1.21589 * 119.99815 * 0.02562 * 14 13 11 16 16 N 1.34771 * 119.99932 * 180.02562 * 14 13 11 17 17 N 1.36601 * 120.00101 * 174.97547 * 16 14 13 18 18 C 1.46352 * 111.00244 * 235.45158 * 17 16 14 19 19 C 1.52620 * 111.89246 * 156.80258 * 18 17 16 20 20 C 1.53923 * 109.31325 * 76.52509 * 19 18 17 21 21 Si 1.87525 * 106.84810 * 302.79518 * 20 19 18 22 22 C 1.86302 * 110.00382 * 163.09864 * 21 20 19 23 23 C 1.86303 * 110.00422 * 284.40100 * 21 20 19 24 24 C 1.47723 * 111.00162 * 111.10085 * 17 16 14 25 25 C 1.37823 * 119.84912 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47490 * 90.00505 * 1 2 3 27 27 H 1.09008 * 109.47055 * 209.99764 * 1 2 3 28 28 H 1.08992 * 109.47352 * 329.99995 * 1 2 3 29 29 H 1.08004 * 119.80719 * 0.27653 * 3 2 1 30 30 H 1.09003 * 109.47220 * 224.99494 * 5 4 3 31 31 H 0.96706 * 113.99957 * 299.99391 * 6 5 4 32 32 H 0.96699 * 113.99892 * 89.99580 * 12 11 4 33 33 H 0.97007 * 120.00136 * 354.97324 * 16 14 13 34 34 H 1.09001 * 109.00063 * 277.42846 * 18 17 16 35 35 H 1.09001 * 108.99616 * 36.25870 * 18 17 16 36 36 H 1.09004 * 109.49993 * 196.47233 * 19 18 17 37 37 H 1.09000 * 109.50106 * 316.57100 * 19 18 17 38 38 H 1.09003 * 109.98127 * 62.12758 * 20 19 18 39 39 H 1.09004 * 109.98129 * 183.36850 * 20 19 18 40 40 H 1.09000 * 109.47320 * 59.99765 * 22 21 20 41 41 H 1.08999 * 109.47404 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.47102 * 299.99812 * 22 21 20 43 43 H 1.09000 * 109.46611 * 59.99993 * 23 21 20 44 44 H 1.09000 * 109.47142 * 179.97438 * 23 21 20 45 45 H 1.08998 * 109.47049 * 299.99903 * 23 21 20 46 46 H 1.08999 * 109.94955 * 303.86049 * 24 17 16 47 47 H 1.09003 * 109.94923 * 65.11249 * 24 17 16 48 48 H 1.08001 * 120.05325 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2013 0.0000 4 6 3.5773 1.2144 -0.0005 5 6 4.3174 2.5271 -0.0011 6 8 4.8556 2.7710 1.3000 7 14 3.1444 3.9012 -0.4556 8 1 2.0392 3.9565 0.5348 9 1 3.8736 5.1948 -0.4555 10 1 2.5851 3.6477 -1.8077 11 6 4.2837 0.0211 -0.0005 12 8 5.6402 0.0324 -0.0005 13 6 3.5897 -1.1967 -0.0005 14 6 4.3305 -2.4728 0.0000 15 8 5.5464 -2.4698 0.0010 16 7 3.6594 -3.6415 -0.0005 17 7 4.3413 -4.8206 -0.1036 18 6 3.8497 -5.6141 -1.2308 19 6 4.8952 -6.6103 -1.7244 20 6 4.9611 -7.8023 -0.7529 21 14 5.3524 -7.1012 0.9418 22 6 4.9569 -8.3585 2.2585 23 6 7.1515 -6.6261 1.0351 24 6 4.2737 -5.5835 1.1596 25 6 2.1930 -1.1954 0.0005 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6506 2.1334 0.0045 30 1 5.1286 2.4865 -0.7280 31 1 4.1887 2.8197 1.9987 32 1 6.0335 0.0357 0.8829 33 1 2.6920 -3.6454 0.0724 34 1 2.9590 -6.1596 -0.9192 35 1 3.5863 -4.9433 -2.0487 36 1 4.6193 -6.9652 -2.7175 37 1 5.8693 -6.1232 -1.7693 38 1 4.0009 -8.3177 -0.7299 39 1 5.7463 -8.4921 -1.0624 40 1 5.5538 -9.2558 2.0951 41 1 5.1870 -7.9423 3.2392 42 1 3.8981 -8.6130 2.2115 43 1 7.3682 -5.8736 0.2769 44 1 7.3692 -6.2196 2.0227 45 1 7.7694 -7.5068 0.8600 46 1 4.6496 -4.9750 1.9821 47 1 3.2448 -5.8839 1.3581 48 1 1.6514 -2.1298 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13422088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:08:45 Heat of formation + Delta-G solvation = -86.242644 kcal Electronic energy + Delta-G solvation = -28017.040534 eV Core-core repulsion = 24196.793516 eV Total energy + Delta-G solvation = -3820.247017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.79379 -40.44214 -38.51352 -37.99824 -37.56767 -34.97524 -33.26550 -33.03801 -31.13277 -29.33366 -28.35642 -27.58728 -27.53887 -26.78464 -25.80254 -23.99493 -22.14723 -21.78788 -21.48147 -19.70285 -18.71640 -18.38784 -17.66923 -17.11364 -16.96135 -16.69284 -16.21119 -15.74315 -15.48899 -15.43679 -15.03818 -14.89111 -14.72559 -14.54338 -14.46292 -14.34358 -13.97906 -13.80851 -13.70638 -13.50557 -13.30606 -13.19581 -13.12418 -13.00085 -12.95951 -12.58903 -12.26033 -12.14645 -12.04256 -11.97749 -11.81073 -11.65887 -11.30477 -10.82136 -10.80054 -10.42699 -10.30994 -10.25165 -10.08133 -9.70019 -9.53446 -0.37730 0.03835 1.11340 1.39994 1.41524 1.52074 1.71185 1.83295 1.89932 1.91147 2.14817 2.54115 2.62039 3.17678 3.31802 3.41237 3.55802 3.61274 3.73852 4.00011 4.07327 4.10629 4.19436 4.36378 4.42322 4.52502 4.54965 4.60340 4.67227 4.73182 4.78192 4.79566 4.80917 4.84270 4.84546 4.84864 4.91529 4.93377 5.09116 5.14780 5.18936 5.29887 5.37070 5.47168 5.57797 5.63220 5.65396 5.81846 6.19289 6.39097 6.68179 6.72130 7.49042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.088 4.088 4 C -0.155 4.155 5 C -0.082 4.082 6 O -0.550 6.550 7 Si 0.990 3.010 8 H -0.230 1.230 9 H -0.275 1.275 10 H -0.257 1.257 11 C 0.169 3.831 12 O -0.491 6.491 13 C -0.175 4.175 14 C 0.570 3.430 15 O -0.542 6.542 16 N -0.575 5.575 17 N -0.301 5.301 18 C 0.026 3.974 19 C -0.104 4.104 20 C -0.411 4.411 21 Si 1.092 2.908 22 C -0.453 4.453 23 C -0.466 4.466 24 C -0.271 4.271 25 C -0.063 4.063 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.150 0.850 30 H 0.108 0.892 31 H 0.389 0.611 32 H 0.404 0.596 33 H 0.390 0.610 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.206 -2.364 1.835 9.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.106 4.106 4 C -0.156 4.156 5 C -0.191 4.191 6 O -0.357 6.357 7 Si 0.812 3.188 8 H -0.153 1.153 9 H -0.201 1.201 10 H -0.181 1.181 11 C 0.122 3.878 12 O -0.303 6.303 13 C -0.180 4.180 14 C 0.358 3.642 15 O -0.418 6.418 16 N -0.320 5.320 17 N -0.117 5.117 18 C -0.102 4.102 19 C -0.142 4.142 20 C -0.497 4.497 21 Si 1.280 2.720 22 C -0.561 4.561 23 C -0.571 4.571 24 C -0.442 4.442 25 C -0.081 4.081 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.168 0.832 30 H 0.126 0.874 31 H 0.238 0.762 32 H 0.263 0.737 33 H 0.232 0.768 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.937 -1.531 0.591 8.105 hybrid contribution -0.753 -0.420 0.982 1.307 sum -8.690 -1.951 1.574 9.045 Atomic orbital electron populations 1.20922 0.88068 1.04595 1.03805 1.20092 0.98074 0.91743 0.99486 1.21407 0.92438 0.99696 0.97013 1.20732 0.94478 0.95470 1.04899 1.25080 1.05685 0.99058 0.89280 1.86522 1.38270 1.94313 1.16629 0.85148 0.77011 0.75637 0.80979 1.15346 1.20065 1.18121 1.18478 0.83642 0.90566 0.95114 1.84658 1.15237 1.96022 1.34410 1.20381 0.94971 0.92275 1.10367 1.18186 0.86983 0.82962 0.76078 1.90785 1.14820 1.87392 1.48780 1.45368 1.08427 1.02266 1.75955 1.62926 1.47417 0.96988 1.04408 1.22590 0.98433 0.96208 0.92937 1.21208 0.98794 0.94524 0.99691 1.26409 1.06340 1.01836 1.15157 0.78314 0.64165 0.62749 0.66748 1.26131 1.05924 1.11799 1.12264 1.26354 1.21959 1.05108 1.03689 1.28289 1.10174 1.12642 0.93141 1.21384 0.91004 0.99702 0.96034 0.89821 0.89775 0.90108 0.83221 0.87434 0.76189 0.73674 0.76829 0.91569 0.90724 0.89997 0.92110 0.89189 0.89651 0.90340 0.91230 0.90288 0.92633 0.92108 0.90876 0.90698 0.91179 0.82734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.02 10.00 71.24 0.71 1.73 16 2 C -0.09 0.31 5.87 -19.90 -0.12 0.19 16 3 C -0.09 0.15 8.30 22.30 0.19 0.34 16 4 C -0.15 -0.37 5.27 -19.80 -0.10 -0.48 16 5 C -0.08 -0.11 2.38 71.23 0.17 0.06 16 6 O -0.55 -0.77 12.88 -148.98 -1.92 -2.68 16 7 Si 0.99 -1.77 25.49 68.60 1.75 -0.02 16 8 H -0.23 1.21 6.72 99.48 0.67 1.88 16 9 H -0.28 -0.64 7.11 99.48 0.71 0.07 16 10 H -0.26 0.08 7.11 99.48 0.71 0.79 16 11 C 0.17 1.22 6.69 22.84 0.15 1.38 16 12 O -0.49 -5.40 10.91 -68.83 -0.75 -6.15 16 13 C -0.17 -0.95 5.89 -20.01 -0.12 -1.07 16 14 C 0.57 5.59 7.87 86.70 0.68 6.27 16 15 O -0.54 -10.18 15.49 16.92 0.26 -9.92 16 16 N -0.57 -1.98 4.66 -175.81 -0.82 -2.80 16 17 N -0.30 -1.16 4.15 -334.16 -1.39 -2.55 16 18 C 0.03 -0.01 5.37 86.28 0.46 0.45 16 19 C -0.10 0.07 5.74 30.78 0.18 0.24 16 20 C -0.41 1.63 5.03 72.29 0.36 1.99 16 21 Si 1.09 -4.00 11.99 68.60 0.82 -3.17 16 22 C -0.45 2.08 8.65 113.37 0.98 3.06 16 23 C -0.47 -1.24 8.65 113.37 0.98 -0.26 16 24 C -0.27 0.03 4.86 127.53 0.62 0.65 16 25 C -0.06 0.11 9.18 22.52 0.21 0.32 16 26 H 0.08 -0.79 8.14 -2.39 -0.02 -0.81 16 27 H 0.08 -0.91 8.08 -2.38 -0.02 -0.93 16 28 H 0.08 -0.81 8.08 -2.39 -0.02 -0.82 16 29 H 0.15 -0.88 4.86 -2.91 -0.01 -0.90 16 30 H 0.11 0.42 7.83 -2.39 -0.02 0.40 16 31 H 0.39 -2.49 8.70 -74.05 -0.64 -3.14 16 32 H 0.40 2.51 9.06 -74.06 -0.67 1.84 16 33 H 0.39 -1.30 6.87 -215.49 -1.48 -2.78 16 34 H 0.07 -0.31 7.78 -2.39 -0.02 -0.33 16 35 H 0.07 0.05 8.03 -2.39 -0.02 0.03 16 36 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.06 0.19 7.96 -2.39 -0.02 0.18 16 38 H 0.09 -0.58 7.99 -2.39 -0.02 -0.60 16 39 H 0.08 -0.37 8.00 -2.39 -0.02 -0.39 16 40 H 0.08 -0.38 7.96 -2.39 -0.02 -0.39 16 41 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 42 H 0.08 -0.47 7.96 -2.39 -0.02 -0.49 16 43 H 0.05 0.41 7.96 -2.39 -0.02 0.39 16 44 H 0.06 0.22 7.96 -2.39 -0.02 0.20 16 45 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 46 H 0.07 0.23 7.99 -2.39 -0.02 0.21 16 47 H 0.07 -0.29 7.92 -2.39 -0.02 -0.31 16 48 H 0.16 -1.23 6.42 -2.91 -0.02 -1.25 16 Total: 0.00 -22.26 385.89 2.22 -20.04 By element: Atomic # 1 Polarization: -6.53 SS G_CDS: -1.09 Total: -7.62 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 5.35 Total: 14.88 kcal Atomic # 7 Polarization: -3.14 SS G_CDS: -2.20 Total: -5.35 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -2.41 Total: -18.75 kcal Atomic # 14 Polarization: -5.77 SS G_CDS: 2.57 Total: -3.20 kcal Total: -22.26 2.22 -20.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13422088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.206 kcal (2) G-P(sol) polarization free energy of solvation -22.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds