Wall clock time and date at job start Sun Mar 7 2021 09:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99898 * 2 1 4 4 C 1.39047 * 111.00158 * 236.04776 * 2 1 3 5 5 C 1.39199 * 119.92959 * 59.72258 * 4 2 1 6 6 C 1.37628 * 120.06345 * 179.72449 * 5 4 2 7 7 C 1.39774 * 119.92988 * 0.55143 * 6 5 4 8 8 C 1.47528 * 120.06546 * 179.70349 * 7 6 5 9 9 O 1.21590 * 119.99979 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00043 * 0.02562 * 8 7 6 11 11 N 1.36601 * 119.99970 * 174.98164 * 10 8 7 12 12 C 1.46358 * 111.00289 * 111.12086 * 11 10 8 13 13 C 1.52626 * 111.88792 * 203.19220 * 12 11 10 14 14 C 1.53927 * 109.31480 * 283.47950 * 13 12 11 15 15 Si 1.87523 * 106.84914 * 57.20245 * 14 13 12 16 16 C 1.86298 * 110.00227 * 196.90206 * 15 14 13 17 17 C 1.86305 * 110.00064 * 75.50718 * 15 14 13 18 18 C 1.47724 * 110.99336 * 235.47263 * 11 10 8 19 19 C 1.39814 * 119.86600 * 359.72495 * 7 6 5 20 20 C 1.37577 * 119.92882 * 359.97438 * 19 7 6 21 21 C 1.50707 * 119.96793 * 180.02562 * 20 19 7 22 22 O 1.42901 * 109.47296 * 104.97330 * 21 20 19 23 23 Si 1.86305 * 109.46614 * 344.97514 * 21 20 19 24 24 H 1.48501 * 109.47070 * 60.00111 * 23 21 20 25 25 H 1.48503 * 109.46957 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47189 * 300.00249 * 23 21 20 27 27 H 1.09004 * 109.47208 * 183.95364 * 1 2 3 28 28 H 1.08997 * 109.47306 * 63.95614 * 1 2 3 29 29 H 1.09000 * 109.46977 * 303.95106 * 1 2 3 30 30 H 1.09000 * 109.46951 * 56.04985 * 3 2 1 31 31 H 1.09010 * 109.46994 * 176.04513 * 3 2 1 32 32 H 1.08998 * 109.47381 * 296.04231 * 3 2 1 33 33 H 1.07995 * 119.96375 * 359.97438 * 5 4 2 34 34 H 1.07997 * 120.03019 * 180.27812 * 6 5 4 35 35 H 0.96999 * 119.99846 * 354.97665 * 10 8 7 36 36 H 1.08997 * 108.99409 * 323.80995 * 12 11 10 37 37 H 1.08996 * 108.99369 * 82.57174 * 12 11 10 38 38 H 1.09000 * 109.49437 * 163.52612 * 13 12 11 39 39 H 1.09005 * 109.52040 * 43.44600 * 13 12 11 40 40 H 1.08998 * 109.97225 * 297.87153 * 14 13 12 41 41 H 1.08997 * 110.05237 * 176.58402 * 14 13 12 42 42 H 1.09006 * 109.47081 * 177.27500 * 16 15 14 43 43 H 1.08996 * 109.47471 * 297.27354 * 16 15 14 44 44 H 1.08993 * 109.47029 * 57.27626 * 16 15 14 45 45 H 1.09003 * 109.46691 * 302.72097 * 17 15 14 46 46 H 1.09000 * 109.47482 * 62.72370 * 17 15 14 47 47 H 1.09000 * 109.47268 * 182.72899 * 17 15 14 48 48 H 1.08996 * 109.94981 * 294.87926 * 18 11 10 49 49 H 1.08994 * 109.95506 * 56.05379 * 18 11 10 50 50 H 1.08006 * 120.03343 * 180.02562 * 19 7 6 51 51 H 1.09000 * 109.46886 * 224.97955 * 21 20 19 52 52 H 0.96697 * 113.99456 * 60.00741 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9673 -0.7250 -1.0768 5 6 1.6484 -0.3447 -2.3773 6 6 2.1447 -1.0569 -3.4452 7 6 2.9604 -2.1699 -3.2226 8 6 3.4887 -2.9394 -4.3651 9 8 4.1978 -3.9077 -4.1700 10 7 3.1854 -2.5691 -5.6250 11 7 3.7559 -3.2173 -6.6834 12 6 2.7621 -4.0063 -7.4128 13 6 3.4057 -5.1440 -8.2008 14 6 4.0673 -4.5746 -9.4686 15 14 5.2998 -3.2792 -8.9035 16 6 5.7757 -2.1853 -10.3344 17 6 6.8142 -4.1048 -8.1991 18 6 4.4467 -2.2654 -7.5772 19 6 3.2742 -2.5528 -1.9150 20 6 2.7800 -1.8331 -0.8518 21 6 3.1181 -2.2446 0.5580 22 8 4.0879 -1.3443 1.0975 23 14 3.8121 -3.9735 0.5506 24 1 5.0400 -4.0104 -0.2839 25 1 4.1448 -4.3794 1.9398 26 1 2.8044 -4.9091 -0.0101 27 1 -0.3634 -1.0252 0.0709 28 1 -0.3634 0.4512 -0.9233 29 1 -0.3633 0.5739 0.8525 30 1 1.5898 1.9163 0.8525 31 1 3.0828 1.3432 0.0709 32 1 1.7044 1.8724 -0.9233 33 1 1.0142 0.5125 -2.5484 34 1 1.9006 -0.7587 -4.4541 35 1 2.5621 -1.8423 -5.7801 36 1 2.0504 -4.4255 -6.7016 37 1 2.2285 -3.3536 -8.1037 38 1 2.6418 -5.8685 -8.4831 39 1 4.1605 -5.6325 -7.5845 40 1 3.3131 -4.1168 -10.1087 41 1 4.5827 -5.3681 -10.0097 42 1 6.4543 -1.4064 -9.9864 43 1 6.2707 -2.7829 -11.0998 44 1 4.8806 -1.7263 -10.7542 45 1 6.5220 -4.7605 -7.3789 46 1 7.3031 -4.6915 -8.9769 47 1 7.5032 -3.3455 -7.8294 48 1 3.7222 -1.5908 -8.0333 49 1 5.1833 -1.6933 -7.0132 50 1 3.9045 -3.4122 -1.7399 51 1 2.2168 -2.2176 1.1705 52 1 3.7937 -0.4238 1.1318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13422196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:15:46 Heat of formation + Delta-G solvation = -26.391102 kcal Electronic energy + Delta-G solvation = -29835.519034 eV Core-core repulsion = 25960.048418 eV Total energy + Delta-G solvation = -3875.470617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.79964 -40.74590 -38.68910 -37.67362 -37.27349 -35.04404 -33.09982 -31.96122 -30.79530 -29.33053 -28.54117 -28.35798 -27.56225 -26.93269 -26.40063 -24.58062 -23.25604 -22.90724 -21.87846 -21.23726 -19.40197 -18.54386 -17.86136 -17.81755 -17.04800 -16.77224 -16.54435 -16.06304 -15.90683 -15.51104 -15.40855 -15.23251 -14.95572 -14.88451 -14.67764 -14.41463 -14.31455 -13.98311 -13.94507 -13.81230 -13.52754 -13.51001 -13.19779 -13.16722 -13.12726 -13.02549 -12.95752 -12.71602 -12.61799 -12.33590 -12.05058 -11.98731 -11.90765 -11.47554 -11.36116 -11.07514 -10.82993 -10.79830 -10.46341 -10.25299 -10.13917 -9.86530 -9.67368 -9.58626 -0.44209 0.10413 1.14596 1.36728 1.41118 1.46357 1.65210 1.81591 1.89450 1.89741 2.14016 2.58822 2.61299 2.73880 3.29673 3.48176 3.60437 3.66838 3.89468 3.98826 4.02847 4.09862 4.14745 4.19540 4.39570 4.40093 4.45016 4.47063 4.51564 4.62914 4.65382 4.66194 4.71800 4.74261 4.79584 4.80501 4.84566 4.85689 4.90816 4.96572 5.01459 5.03058 5.07393 5.10075 5.18201 5.29144 5.46785 5.48406 5.58412 5.65519 5.79141 5.79983 6.14634 6.20462 6.32765 6.68085 7.42095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.524 5.524 3 C 0.022 3.978 4 C 0.133 3.867 5 C -0.148 4.148 6 C -0.059 4.059 7 C -0.143 4.143 8 C 0.570 3.430 9 O -0.560 6.560 10 N -0.570 5.570 11 N -0.303 5.303 12 C 0.026 3.974 13 C -0.104 4.104 14 C -0.414 4.414 15 Si 1.095 2.905 16 C -0.452 4.452 17 C -0.467 4.467 18 C -0.271 4.271 19 C -0.076 4.076 20 C -0.109 4.109 21 C -0.065 4.065 22 O -0.548 6.548 23 Si 1.010 2.990 24 H -0.279 1.279 25 H -0.261 1.261 26 H -0.248 1.248 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.393 0.607 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.121 0.879 51 H 0.099 0.901 52 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 6.993 -3.975 10.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.246 5.246 3 C -0.124 4.124 4 C 0.038 3.962 5 C -0.168 4.168 6 C -0.078 4.078 7 C -0.147 4.147 8 C 0.359 3.641 9 O -0.438 6.438 10 N -0.315 5.315 11 N -0.119 5.119 12 C -0.102 4.102 13 C -0.142 4.142 14 C -0.500 4.500 15 Si 1.284 2.716 16 C -0.561 4.561 17 C -0.573 4.573 18 C -0.442 4.442 19 C -0.095 4.095 20 C -0.110 4.110 21 C -0.175 4.175 22 O -0.356 6.356 23 Si 0.834 3.166 24 H -0.205 1.205 25 H -0.185 1.185 26 H -0.172 1.172 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.173 0.827 34 H 0.174 0.826 35 H 0.235 0.765 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.102 0.898 50 H 0.139 0.861 51 H 0.117 0.883 52 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.719 4.445 -3.084 7.179 hybrid contribution -1.362 1.953 -0.964 2.569 sum -6.081 6.398 -4.049 9.711 Atomic orbital electron populations 1.22554 0.84127 1.03147 1.02371 1.59457 1.09975 1.15233 1.39923 1.22608 1.01153 0.86141 1.02489 1.18909 0.94115 0.93147 0.89994 1.21844 1.01491 1.01397 0.92062 1.21411 0.93588 0.92046 1.00786 1.19792 1.03465 0.99071 0.92371 1.18335 0.79811 0.83521 0.82436 1.90765 1.38869 1.28686 1.85450 1.45350 1.46846 1.36530 1.02766 1.62961 1.24484 1.19672 1.04811 1.22596 0.93937 0.96387 0.97234 1.21199 1.00660 0.96660 0.95709 1.26444 1.10890 1.12227 1.00394 0.78265 0.65097 0.64955 0.63328 1.26123 1.06136 1.10140 1.13679 1.26369 1.16464 1.07816 1.06620 1.28298 1.04731 1.03787 1.07423 1.21156 0.97370 0.99142 0.91838 1.20170 0.98752 0.96190 0.95898 1.24942 0.97579 1.04042 0.90914 1.86672 1.42039 1.22043 1.84818 0.84520 0.79345 0.73200 0.79568 1.20452 1.18496 1.17161 0.91387 0.93814 0.89269 0.89043 0.90985 0.93972 0.82705 0.82568 0.76472 0.91404 0.91677 0.90355 0.92132 0.89268 0.89742 0.91033 0.90440 0.90247 0.92618 0.90899 0.91900 0.90686 0.89798 0.86117 0.88322 0.77314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.15 9.33 127.69 1.19 1.04 16 2 N -0.52 1.89 3.71 -745.09 -2.76 -0.87 16 3 C 0.02 -0.15 9.10 127.69 1.16 1.02 16 4 C 0.13 -0.05 4.67 38.47 0.18 0.13 16 5 C -0.15 0.51 8.53 22.36 0.19 0.70 16 6 C -0.06 0.14 9.52 22.50 0.21 0.35 16 7 C -0.14 -0.77 5.88 -20.07 -0.12 -0.88 16 8 C 0.57 5.55 7.86 86.69 0.68 6.23 16 9 O -0.56 -10.87 16.67 -4.00 -0.07 -10.94 16 10 N -0.57 -1.71 4.65 -175.82 -0.82 -2.53 16 11 N -0.30 -1.08 4.15 -334.16 -1.39 -2.46 16 12 C 0.03 0.01 5.38 86.28 0.46 0.48 16 13 C -0.10 -0.01 5.74 30.78 0.18 0.17 16 14 C -0.41 1.59 5.04 72.29 0.36 1.96 16 15 Si 1.10 -4.88 11.99 68.60 0.82 -4.06 16 16 C -0.45 2.47 8.65 113.37 0.98 3.45 16 17 C -0.47 -0.84 8.65 113.37 0.98 0.14 16 18 C -0.27 0.45 4.85 127.53 0.62 1.07 16 19 C -0.08 -0.62 8.19 22.50 0.18 -0.43 16 20 C -0.11 -0.47 5.28 -19.78 -0.10 -0.57 16 21 C -0.06 -0.26 2.30 71.24 0.16 -0.10 16 22 O -0.55 -2.89 12.65 -148.98 -1.89 -4.78 16 23 Si 1.01 7.26 25.74 68.60 1.77 9.02 16 24 H -0.28 -3.38 6.73 99.48 0.67 -2.71 16 25 H -0.26 -2.06 7.11 99.48 0.71 -1.35 16 26 H -0.25 -1.71 7.11 99.48 0.71 -1.00 16 27 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 28 H 0.04 -0.34 7.08 -2.39 -0.02 -0.36 16 29 H 0.09 -0.71 8.12 -2.39 -0.02 -0.73 16 30 H 0.09 -0.79 8.12 -2.39 -0.02 -0.81 16 31 H 0.07 -0.43 7.41 -2.38 -0.02 -0.45 16 32 H 0.04 -0.32 7.33 -2.39 -0.02 -0.34 16 33 H 0.16 -1.29 6.98 -2.91 -0.02 -1.31 16 34 H 0.16 -1.42 6.40 -2.91 -0.02 -1.44 16 35 H 0.39 -1.64 6.86 -215.50 -1.48 -3.11 16 36 H 0.07 0.17 8.03 -2.39 -0.02 0.16 16 37 H 0.07 -0.27 7.78 -2.39 -0.02 -0.28 16 38 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.06 0.24 7.96 -2.38 -0.02 0.22 16 40 H 0.09 -0.56 7.99 -2.39 -0.02 -0.58 16 41 H 0.08 -0.35 7.99 -2.39 -0.02 -0.37 16 42 H 0.07 -0.36 7.96 -2.38 -0.02 -0.37 16 43 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 44 H 0.08 -0.54 7.96 -2.39 -0.02 -0.56 16 45 H 0.05 0.36 7.96 -2.39 -0.02 0.34 16 46 H 0.07 0.02 7.96 -2.39 -0.02 0.00 16 47 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 48 H 0.07 -0.45 7.92 -2.39 -0.02 -0.47 16 49 H 0.08 0.01 7.99 -2.39 -0.02 -0.01 16 50 H 0.12 1.45 4.46 -2.91 -0.01 1.43 16 51 H 0.10 0.08 7.77 -2.39 -0.02 0.06 16 52 H 0.38 0.01 7.49 -74.06 -0.55 -0.55 16 Total: 0.00 -19.82 407.23 2.60 -17.21 By element: Atomic # 1 Polarization: -14.95 SS G_CDS: -0.40 Total: -15.34 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 7.33 Total: 14.75 kcal Atomic # 7 Polarization: -0.90 SS G_CDS: -4.97 Total: -5.87 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -1.95 Total: -15.72 kcal Atomic # 14 Polarization: 2.37 SS G_CDS: 2.59 Total: 4.96 kcal Total: -19.82 2.60 -17.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13422196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.179 kcal (2) G-P(sol) polarization free energy of solvation -19.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds