Wall clock time and date at job start Sun Mar 7 2021 09:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35994 * 116.99496 * 2 1 4 4 C 1.39112 * 120.06343 * 180.02562 * 3 2 1 5 5 O 1.36013 * 120.07635 * 0.02562 * 4 3 2 6 6 C 1.42896 * 117.00537 * 90.00126 * 5 4 3 7 7 C 1.53005 * 109.46916 * 89.99501 * 6 5 4 8 8 C 1.50697 * 109.47659 * 209.99743 * 6 5 4 9 9 O 1.21282 * 120.00061 * 0.02562 * 8 6 5 10 10 N 1.34778 * 120.00091 * 179.97438 * 8 6 5 11 11 N 1.36598 * 120.00163 * 174.98856 * 10 8 6 12 12 C 1.46351 * 111.00135 * 111.10702 * 11 10 8 13 13 C 1.52626 * 111.89457 * 203.19472 * 12 11 10 14 14 C 1.53923 * 109.31425 * 283.48376 * 13 12 11 15 15 Si 1.87529 * 106.85074 * 57.19905 * 14 13 12 16 16 C 1.86300 * 110.00262 * 196.90314 * 15 14 13 17 17 C 1.86297 * 110.00092 * 75.50542 * 15 14 13 18 18 C 1.47720 * 110.99740 * 235.46180 * 11 10 8 19 19 C 1.38670 * 119.84655 * 180.29915 * 4 3 2 20 20 Cl 1.73596 * 120.01092 * 179.70052 * 19 4 3 21 21 C 1.38335 * 119.97606 * 359.44347 * 19 4 3 22 22 C 1.38260 * 120.13493 * 0.53431 * 21 19 4 23 23 C 1.50701 * 119.92441 * 179.74565 * 22 21 19 24 24 O 1.42894 * 109.47240 * 120.02171 * 23 22 21 25 25 Si 1.86296 * 109.47099 * 0.02562 * 23 22 21 26 26 H 1.48502 * 109.47347 * 300.00174 * 25 23 22 27 27 H 1.48495 * 109.47343 * 60.00118 * 25 23 22 28 28 H 1.48498 * 109.47306 * 180.02562 * 25 23 22 29 29 C 1.38230 * 120.15132 * 359.76340 * 22 21 19 30 30 H 1.08997 * 109.47099 * 299.99414 * 1 2 3 31 31 H 1.08990 * 109.47495 * 60.00202 * 1 2 3 32 32 H 1.09003 * 109.46553 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46491 * 330.00441 * 6 5 4 34 34 H 1.09000 * 109.47397 * 300.00733 * 7 6 5 35 35 H 1.09003 * 109.46772 * 60.01113 * 7 6 5 36 36 H 1.09000 * 109.47026 * 180.02562 * 7 6 5 37 37 H 0.97007 * 119.99694 * 354.98567 * 10 8 6 38 38 H 1.08994 * 109.00216 * 323.82246 * 12 11 10 39 39 H 1.09006 * 109.00033 * 82.57627 * 12 11 10 40 40 H 1.08997 * 109.50045 * 163.52552 * 13 12 11 41 41 H 1.09010 * 109.51795 * 43.44608 * 13 12 11 42 42 H 1.09007 * 109.97586 * 297.86546 * 14 13 12 43 43 H 1.09001 * 110.05551 * 176.57635 * 14 13 12 44 44 H 1.08996 * 109.47018 * 177.26956 * 16 15 14 45 45 H 1.08997 * 109.47543 * 297.27170 * 16 15 14 46 46 H 1.09003 * 109.46965 * 57.27776 * 16 15 14 47 47 H 1.08997 * 109.46980 * 302.72553 * 17 15 14 48 48 H 1.08992 * 109.47487 * 62.72687 * 17 15 14 49 49 H 1.09000 * 109.46987 * 182.72940 * 17 15 14 50 50 H 1.09003 * 109.94969 * 294.87799 * 18 11 10 51 51 H 1.08995 * 109.95472 * 56.14293 * 18 11 10 52 52 H 1.08000 * 119.93300 * 180.30229 * 21 19 4 53 53 H 1.08998 * 109.46785 * 240.02119 * 23 22 21 54 54 H 0.96696 * 114.00349 * 179.97438 * 24 23 22 55 55 H 1.08005 * 119.99094 * 179.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4354 1.2862 -0.0005 5 8 4.1791 0.1474 -0.0016 6 6 4.5334 -0.3950 -1.2752 7 6 5.8676 0.2002 -1.7298 8 6 4.6628 -1.8924 -1.1653 9 8 4.4701 -2.4412 -0.1010 10 7 4.9916 -2.6219 -2.2498 11 7 5.2093 -3.9650 -2.1292 12 6 4.1513 -4.7293 -2.7914 13 6 4.0300 -6.1415 -2.2253 14 6 5.1747 -7.0108 -2.7759 15 14 6.7782 -6.1615 -2.3025 16 6 8.1806 -6.8286 -3.3317 17 6 7.1305 -6.4284 -0.4927 18 6 6.5426 -4.3338 -2.6473 19 6 4.0602 2.5242 0.0057 20 17 5.7934 2.6221 0.0130 21 6 3.3019 3.6811 0.0009 22 6 1.9213 3.6062 0.0009 23 6 1.0998 4.8696 0.0014 24 8 0.2750 4.9019 -1.1650 25 14 2.2338 6.3476 0.0011 26 1 3.0911 6.3141 1.2132 27 1 3.0900 6.3145 -1.2117 28 1 1.4243 7.5926 0.0022 29 6 1.2928 2.3750 0.0009 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 3.7594 -0.1496 -2.0026 34 1 5.7740 1.2833 -1.8093 35 1 6.6415 -0.0452 -1.0025 36 1 6.1376 -0.2132 -2.7015 37 1 5.0737 -2.1930 -3.1161 38 1 3.2021 -4.2107 -2.6577 39 1 4.3726 -4.7920 -3.8569 40 1 3.0726 -6.5709 -2.5206 41 1 4.0921 -6.1045 -1.1376 42 1 5.0981 -7.0838 -3.8608 43 1 5.1352 -8.0057 -2.3323 44 1 9.0985 -6.2956 -3.0840 45 1 8.3100 -7.8908 -3.1247 46 1 7.9537 -6.6893 -4.3887 47 1 6.2939 -6.0569 0.0989 48 1 7.2660 -7.4930 -0.3021 49 1 8.0379 -5.8915 -0.2162 50 1 6.5888 -4.1489 -3.7205 51 1 7.3130 -3.7567 -2.1360 52 1 3.7892 4.6449 0.0008 53 1 0.4713 4.8939 0.8916 54 1 -0.2828 5.6890 -1.2306 55 1 0.2142 2.3194 0.0013 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13428712.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:16:01 Heat of formation + Delta-G solvation = -108.654596 kcal Electronic energy + Delta-G solvation = -36941.562780 eV Core-core repulsion = 32130.786685 eV Total energy + Delta-G solvation = -4810.776095 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 416.154 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.00318 -41.12123 -39.56732 -39.12166 -38.29044 -37.76780 -36.99545 -35.05257 -33.51804 -31.89455 -31.42166 -30.86452 -29.31670 -28.58649 -28.34789 -27.52693 -26.81651 -25.78686 -24.28507 -23.73176 -22.69345 -21.87772 -21.64343 -19.64324 -19.01713 -18.70232 -18.45592 -18.10610 -17.90142 -17.04534 -16.80355 -16.67202 -16.35658 -16.17924 -16.00820 -15.59300 -15.28613 -15.08606 -14.85564 -14.77150 -14.62928 -14.41097 -14.28977 -14.12006 -14.02534 -13.96688 -13.80276 -13.78830 -13.49447 -13.29424 -13.18370 -13.11009 -12.97027 -12.89629 -12.74188 -12.70759 -12.35927 -12.09178 -12.03394 -12.01101 -11.96559 -11.92734 -11.64955 -11.38077 -11.21963 -10.80864 -10.63354 -10.41207 -10.37391 -10.21441 -9.84174 -9.64572 -9.45189 -0.36985 -0.07196 0.78002 1.11443 1.23760 1.44851 1.50630 1.54292 1.77394 1.90340 1.90909 1.99836 2.15415 2.20019 2.58677 2.63869 3.23886 3.32204 3.60888 3.64357 3.68677 3.75621 3.79090 3.90824 4.00627 4.02074 4.07813 4.16742 4.24210 4.31734 4.42811 4.43800 4.52917 4.54249 4.62937 4.64294 4.67966 4.68163 4.74392 4.78760 4.80553 4.81952 4.85627 4.86806 4.92788 5.06575 5.07533 5.09544 5.19873 5.30060 5.47755 5.59506 5.66496 5.82055 5.87192 6.18686 6.27105 6.44359 6.79896 7.48039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.322 6.322 3 C 0.120 3.880 4 C 0.051 3.949 5 O -0.307 6.307 6 C 0.081 3.919 7 C -0.174 4.174 8 C 0.533 3.467 9 O -0.543 6.543 10 N -0.572 5.572 11 N -0.301 5.301 12 C 0.027 3.973 13 C -0.103 4.103 14 C -0.414 4.414 15 Si 1.095 2.905 16 C -0.452 4.452 17 C -0.467 4.467 18 C -0.271 4.271 19 C -0.016 4.016 20 Cl -0.039 7.039 21 C -0.149 4.149 22 C -0.026 4.026 23 C -0.076 4.076 24 O -0.557 6.557 25 Si 0.960 3.040 26 H -0.258 1.258 27 H -0.265 1.265 28 H -0.246 1.246 29 C -0.159 4.159 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.394 0.606 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.054 0.946 48 H 0.072 0.928 49 H 0.062 0.938 50 H 0.075 0.925 51 H 0.084 0.916 52 H 0.146 0.854 53 H 0.111 0.889 54 H 0.403 0.597 55 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 2.779 -6.585 7.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.073 3.927 4 C 0.005 3.995 5 O -0.222 6.222 6 C 0.021 3.979 7 C -0.231 4.231 8 C 0.318 3.682 9 O -0.417 6.417 10 N -0.319 5.319 11 N -0.118 5.118 12 C -0.101 4.101 13 C -0.142 4.142 14 C -0.500 4.500 15 Si 1.283 2.717 16 C -0.560 4.560 17 C -0.573 4.573 18 C -0.442 4.442 19 C -0.043 4.043 20 Cl -0.010 7.010 21 C -0.167 4.167 22 C -0.027 4.027 23 C -0.186 4.186 24 O -0.367 6.367 25 Si 0.784 3.216 26 H -0.182 1.182 27 H -0.190 1.190 28 H -0.170 1.170 29 C -0.178 4.178 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.235 0.765 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.073 0.927 48 H 0.091 0.909 49 H 0.081 0.919 50 H 0.093 0.907 51 H 0.103 0.897 52 H 0.164 0.836 53 H 0.128 0.872 54 H 0.254 0.746 55 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.543 2.227 -5.251 6.245 hybrid contribution -0.466 0.702 -0.882 1.220 sum -3.009 2.928 -6.133 7.433 Atomic orbital electron populations 1.23455 0.75821 1.05697 1.02976 1.86231 1.23824 1.25596 1.87837 1.19364 0.90803 0.86105 0.96398 1.17784 0.87175 0.85465 1.09026 1.86237 1.69881 1.38148 1.27982 1.22231 1.00034 0.89737 0.85895 1.22554 0.94565 1.03201 1.02774 1.20440 0.75918 0.88204 0.83605 1.90704 1.48373 1.73199 1.29454 1.45326 1.72274 1.03985 1.10265 1.62945 1.02682 0.89843 1.56282 1.22583 0.94449 0.95408 0.97650 1.21194 0.99867 0.92341 1.00781 1.26446 1.12878 1.05393 1.05237 0.78267 0.66404 0.61950 0.65034 1.26120 1.13295 1.06984 1.09646 1.26371 1.04301 1.04482 1.22127 1.28287 0.90949 1.22656 1.02301 1.20909 0.86063 0.93162 1.04204 1.98381 1.08024 1.98336 1.96254 1.20887 0.93358 0.97399 1.05085 1.19304 0.91933 0.95010 0.96438 1.24663 0.99915 1.01490 0.92577 1.86435 1.58993 1.49394 1.41830 0.85522 0.78952 0.76494 0.80610 1.18202 1.18981 1.16970 1.21311 1.01865 0.89809 1.04823 0.90958 0.90726 0.86922 0.87864 0.89894 0.91948 0.88278 0.76510 0.91523 0.91750 0.90370 0.92223 0.89281 0.89759 0.91032 0.90443 0.90259 0.92685 0.90911 0.91901 0.90711 0.89715 0.83630 0.87158 0.74583 0.81683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.32 -2.58 10.28 -79.59 -0.82 -3.40 16 3 C 0.12 0.86 6.70 22.57 0.15 1.01 16 4 C 0.05 0.49 5.56 22.58 0.13 0.61 16 5 O -0.31 -4.00 8.54 -67.28 -0.57 -4.57 16 6 C 0.08 0.54 3.20 29.85 0.10 0.64 16 7 C -0.17 -0.30 8.31 71.98 0.60 0.30 16 8 C 0.53 5.79 7.33 87.66 0.64 6.43 16 9 O -0.54 -11.81 16.83 16.00 0.27 -11.54 16 10 N -0.57 -2.19 4.56 -173.53 -0.79 -2.98 16 11 N -0.30 -1.30 4.15 -334.16 -1.39 -2.69 16 12 C 0.03 0.03 5.38 86.28 0.46 0.50 16 13 C -0.10 -0.08 5.74 30.78 0.18 0.09 16 14 C -0.41 1.33 5.04 72.29 0.36 1.69 16 15 Si 1.09 -4.17 11.99 68.60 0.82 -3.35 16 16 C -0.45 2.21 8.65 113.37 0.98 3.19 16 17 C -0.47 -1.17 8.65 113.37 0.98 -0.19 16 18 C -0.27 0.27 4.85 127.53 0.62 0.89 16 19 C -0.02 -0.11 6.24 22.40 0.14 0.03 16 20 Cl -0.04 -0.24 24.94 -2.72 -0.07 -0.30 16 21 C -0.15 -0.54 8.45 22.30 0.19 -0.36 16 22 C -0.03 -0.04 5.42 -19.86 -0.11 -0.15 16 23 C -0.08 0.32 2.81 71.24 0.20 0.52 16 24 O -0.56 2.45 12.74 -148.98 -1.90 0.55 16 25 Si 0.96 -3.00 25.06 68.60 1.72 -1.28 16 26 H -0.26 0.26 7.11 99.48 0.71 0.97 16 27 H -0.27 -0.14 7.11 99.48 0.71 0.57 16 28 H -0.25 0.99 7.11 99.48 0.71 1.70 16 29 C -0.16 -0.34 8.60 22.35 0.19 -0.14 16 30 H 0.07 -0.29 7.66 -2.39 -0.02 -0.31 16 31 H 0.07 -0.35 7.66 -2.39 -0.02 -0.36 16 32 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 33 H 0.10 0.29 7.91 -2.39 -0.02 0.27 16 34 H 0.08 0.13 5.49 -2.39 -0.01 0.12 16 35 H 0.06 0.30 8.14 -2.39 -0.02 0.29 16 36 H 0.10 -0.43 7.69 -2.39 -0.02 -0.45 16 37 H 0.39 -1.23 8.41 -215.49 -1.81 -3.04 16 38 H 0.07 0.23 8.03 -2.39 -0.02 0.21 16 39 H 0.06 -0.21 7.78 -2.38 -0.02 -0.22 16 40 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.06 0.29 7.96 -2.38 -0.02 0.27 16 42 H 0.09 -0.50 7.99 -2.38 -0.02 -0.52 16 43 H 0.08 -0.30 7.99 -2.39 -0.02 -0.32 16 44 H 0.07 -0.32 7.96 -2.39 -0.02 -0.33 16 45 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 46 H 0.08 -0.49 7.96 -2.39 -0.02 -0.51 16 47 H 0.05 0.40 7.96 -2.39 -0.02 0.38 16 48 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 49 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 50 H 0.07 -0.39 7.92 -2.39 -0.02 -0.41 16 51 H 0.08 0.06 7.99 -2.39 -0.02 0.04 16 52 H 0.15 0.17 4.87 -2.91 -0.01 0.16 16 53 H 0.11 -1.01 7.96 -2.39 -0.02 -1.03 16 54 H 0.40 -5.37 8.74 -74.06 -0.65 -6.02 16 55 H 0.17 -0.43 6.30 -2.91 -0.02 -0.45 16 Total: 0.00 -26.48 451.73 3.42 -23.06 By element: Atomic # 1 Polarization: -8.86 SS G_CDS: -0.78 Total: -9.65 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 6.92 Total: 16.14 kcal Atomic # 7 Polarization: -3.49 SS G_CDS: -2.18 Total: -5.67 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -3.02 Total: -18.95 kcal Atomic # 14 Polarization: -7.17 SS G_CDS: 2.54 Total: -4.63 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.07 Total: -0.30 kcal Total: -26.48 3.42 -23.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13428712.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.593 kcal (2) G-P(sol) polarization free energy of solvation -26.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds