Wall clock time and date at job start Sun Mar 7 2021 09:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86303 * 109.98121 * 2 1 4 4 C 1.87520 * 110.00512 * 121.31279 * 2 1 3 5 5 C 1.53930 * 106.84959 * 163.10056 * 4 2 1 6 6 C 1.52619 * 109.31494 * 302.79618 * 5 4 2 7 7 N 1.46361 * 111.88888 * 76.52023 * 6 5 4 8 8 N 1.36604 * 111.00130 * 156.80467 * 7 6 5 9 9 C 1.34767 * 120.00058 * 235.44142 * 8 7 6 10 10 O 1.21658 * 120.00382 * 354.98411 * 9 8 7 11 11 C 1.47045 * 120.00004 * 174.98574 * 9 8 7 12 12 C 1.36217 * 123.49611 * 180.02562 * 11 9 8 13 13 Cl 1.73599 * 124.60470 * 359.97438 * 12 11 9 14 14 S 1.70442 * 110.79422 * 179.97438 * 12 11 9 15 15 C 1.75498 * 92.46580 * 359.97438 * 14 12 11 16 16 C 1.50698 * 124.68810 * 179.97438 * 15 14 12 17 17 O 1.42900 * 109.47064 * 245.02486 * 16 15 14 18 18 Si 1.86301 * 109.46977 * 5.02243 * 16 15 14 19 19 H 1.48506 * 109.47026 * 60.00402 * 18 16 15 20 20 H 1.48501 * 109.46941 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47413 * 300.00390 * 18 16 15 22 22 C 1.32692 * 110.62714 * 0.23179 * 15 14 12 23 23 C 1.47722 * 111.30666 * 280.98210 * 7 6 5 24 24 H 1.08991 * 109.47466 * 298.68464 * 1 2 3 25 25 H 1.09001 * 109.47378 * 58.68648 * 1 2 3 26 26 H 1.09003 * 109.46635 * 178.68304 * 1 2 3 27 27 H 1.09007 * 109.47365 * 181.31316 * 3 2 1 28 28 H 1.09000 * 109.47610 * 301.31258 * 3 2 1 29 29 H 1.09003 * 109.47114 * 61.31267 * 3 2 1 30 30 H 1.09000 * 109.97434 * 43.76633 * 4 2 1 31 31 H 1.09002 * 110.05507 * 282.48133 * 4 2 1 32 32 H 1.09002 * 109.49548 * 182.84558 * 5 4 2 33 33 H 1.09001 * 109.49432 * 62.75200 * 5 4 2 34 34 H 1.09004 * 108.99704 * 315.90317 * 6 5 4 35 35 H 1.08992 * 108.93914 * 197.09957 * 6 5 4 36 36 H 0.97005 * 119.99505 * 55.43496 * 8 7 6 37 37 H 1.09003 * 109.47289 * 125.02743 * 16 15 14 38 38 H 0.96699 * 113.99940 * 59.99878 * 17 16 15 39 39 H 1.07997 * 123.45198 * 179.76939 * 22 15 14 40 40 H 1.09004 * 109.94880 * 179.68301 * 23 7 6 41 41 H 1.08998 * 109.94823 * 300.93486 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4996 1.7509 0.0000 4 6 2.5045 -0.9158 1.5054 5 6 3.9816 -1.2489 1.2290 6 6 4.0832 -2.0635 -0.0576 7 7 3.9263 -1.2259 -1.2475 8 7 4.5044 -1.8113 -2.3380 9 6 5.4350 -1.1429 -3.0475 10 8 5.6945 0.0136 -2.7732 11 6 6.1368 -1.8114 -4.1533 12 6 7.0887 -1.2046 -4.9157 13 17 7.6202 0.4350 -4.7086 14 16 7.6871 -2.2737 -6.1006 15 6 6.6373 -3.5744 -5.5658 16 6 6.5912 -4.9483 -6.1833 17 8 5.3111 -5.1585 -6.7827 18 14 7.9169 -5.0889 -7.4847 19 1 9.2472 -4.8706 -6.8618 20 1 7.8711 -6.4426 -8.0936 21 1 7.6888 -4.0656 -8.5363 22 6 5.8857 -3.1793 -4.5461 23 6 2.5043 -0.9181 -1.5035 24 1 -0.3634 0.4932 0.9015 25 1 -0.3634 0.5341 -0.8780 26 1 -0.3633 -1.0275 -0.0236 27 1 3.5893 1.7413 -0.0236 28 1 2.1218 2.2749 -0.8779 29 1 2.1601 2.2609 0.9015 30 1 1.9367 -1.8345 1.6523 31 1 2.4244 -0.2835 2.3897 32 1 4.3854 -1.8284 2.0593 33 1 4.5488 -0.3245 1.1202 34 1 3.3056 -2.8274 -0.0563 35 1 5.0580 -2.5500 -0.0922 36 1 4.2452 -2.7081 -2.6015 37 1 6.7586 -5.6994 -5.4114 38 1 5.0946 -4.5247 -7.4802 39 1 5.1622 -3.8155 -4.0582 40 1 2.4135 -0.2898 -2.3896 41 1 1.9430 -1.8420 -1.6424 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_13431040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:16:19 Heat of formation + Delta-G solvation = -42.958958 kcal Electronic energy + Delta-G solvation = -24140.741403 eV Core-core repulsion = 20525.943572 eV Total energy + Delta-G solvation = -3614.797831 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 348.064 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.09057 -39.32932 -38.41427 -37.73824 -36.94817 -34.86155 -31.97637 -31.34783 -29.39644 -28.38270 -27.61755 -27.01818 -26.24001 -24.05020 -22.21590 -21.89022 -20.73413 -19.42984 -18.66398 -18.07077 -17.34539 -16.78750 -16.54105 -16.19042 -15.94846 -15.51124 -15.04099 -14.98810 -14.78813 -14.69342 -14.45136 -14.18039 -14.09240 -14.03981 -13.82089 -13.56014 -13.24705 -13.12548 -13.03561 -12.98958 -12.60188 -12.49953 -12.35236 -12.08526 -12.04637 -11.96285 -11.87441 -11.22545 -10.84624 -10.77944 -10.57719 -10.36811 -10.07761 -9.91499 -9.73201 -9.67477 -0.59847 -0.23806 0.38779 0.70697 0.90015 1.08013 1.23078 1.32316 1.44991 1.73873 1.76564 1.83280 2.11182 2.39094 2.56330 3.12569 3.36487 3.45090 3.80936 3.86160 3.94792 4.10071 4.28024 4.36284 4.41529 4.49096 4.61193 4.65264 4.67245 4.67925 4.72391 4.83557 4.88096 4.90975 4.96106 5.02606 5.23724 5.37248 5.43637 5.71614 5.79102 6.27769 6.32802 6.46875 7.60639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.031 2.969 3 C -0.443 4.443 4 C -0.410 4.410 5 C -0.100 4.100 6 C 0.026 3.974 7 N -0.274 5.274 8 N -0.581 5.581 9 C 0.591 3.409 10 O -0.492 6.492 11 C -0.155 4.155 12 C -0.110 4.110 13 Cl 0.029 6.971 14 S 0.220 5.780 15 C -0.235 4.235 16 C -0.037 4.037 17 O -0.531 6.531 18 Si 0.885 3.115 19 H -0.230 1.230 20 H -0.221 1.221 21 H -0.230 1.230 22 C -0.068 4.068 23 C -0.260 4.260 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.377 0.623 37 H 0.131 0.869 38 H 0.380 0.620 39 H 0.157 0.843 40 H 0.091 0.909 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 -4.420 -0.710 4.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.224 2.776 3 C -0.551 4.551 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.102 4.102 7 N -0.090 5.090 8 N -0.326 5.326 9 C 0.376 3.624 10 O -0.364 6.364 11 C -0.175 4.175 12 C -0.257 4.257 13 Cl 0.058 6.942 14 S 0.485 5.515 15 C -0.352 4.352 16 C -0.151 4.151 17 O -0.337 6.337 18 Si 0.704 3.296 19 H -0.153 1.153 20 H -0.143 1.143 21 H -0.153 1.153 22 C -0.098 4.098 23 C -0.433 4.433 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.216 0.784 37 H 0.149 0.851 38 H 0.227 0.773 39 H 0.175 0.825 40 H 0.109 0.891 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.856 -3.443 -1.803 3.979 hybrid contribution -1.962 -0.723 0.863 2.263 sum -1.106 -4.166 -0.940 4.412 Atomic orbital electron populations 1.26119 1.20388 1.04519 1.04812 0.79217 0.65826 0.67753 0.64821 1.26023 1.07352 1.17697 1.04046 1.26380 1.00718 1.08091 1.14404 1.21183 0.96623 1.01120 0.94941 1.22562 1.02241 0.95224 0.90140 1.62950 1.13846 1.38330 0.93833 1.45373 1.41751 1.17733 1.27718 1.17137 0.78701 0.85891 0.80721 1.90863 1.63140 1.15457 1.66953 1.20213 1.01547 0.94786 1.00944 1.25365 1.02399 0.94818 1.03133 1.98446 1.87810 1.11920 1.96017 1.83447 1.38602 0.99680 1.29759 1.24792 1.04750 1.01354 1.04325 1.24375 0.94693 0.92314 1.03672 1.86550 1.33957 1.57436 1.55720 0.86372 0.78553 0.85045 0.79656 1.15253 1.14346 1.15263 1.21011 0.99633 0.93051 0.96087 1.28080 0.90937 1.06931 1.17374 0.90727 0.91061 0.91247 0.90300 0.91378 0.91425 0.90702 0.90089 0.90816 0.90223 0.93620 0.90075 0.78412 0.85144 0.77262 0.82513 0.89086 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.72 8.65 101.05 0.87 1.59 16 2 Si 1.03 -1.89 11.99 -169.99 -2.04 -3.92 16 3 C -0.44 -0.14 8.65 101.05 0.87 0.73 16 4 C -0.41 0.66 5.03 37.64 0.19 0.85 16 5 C -0.10 0.06 5.74 -26.44 -0.15 -0.09 16 6 C 0.03 -0.01 5.38 -4.31 -0.02 -0.03 16 7 N -0.27 -0.36 4.15 -56.97 -0.24 -0.59 16 8 N -0.58 -0.69 4.68 30.34 0.14 -0.54 16 9 C 0.59 2.15 7.89 -12.69 -0.10 2.05 16 10 O -0.49 -3.53 15.24 5.23 0.08 -3.45 16 11 C -0.15 -0.28 5.98 -104.58 -0.63 -0.91 16 12 C -0.11 -0.24 6.87 30.01 0.21 -0.04 16 13 Cl 0.03 0.11 27.20 -51.86 -1.41 -1.30 16 14 S 0.22 -0.05 20.19 -107.50 -2.17 -2.22 16 15 C -0.23 0.31 5.65 -36.20 -0.20 0.10 16 16 C -0.04 0.10 2.94 36.00 0.11 0.20 16 17 O -0.53 1.04 12.88 -35.23 -0.45 0.59 16 18 Si 0.88 -1.93 26.20 -169.99 -4.45 -6.38 16 19 H -0.23 0.36 7.11 56.52 0.40 0.76 16 20 H -0.22 0.26 7.11 56.52 0.40 0.66 16 21 H -0.23 0.47 7.11 56.52 0.40 0.87 16 22 C -0.07 0.06 9.75 -39.00 -0.38 -0.32 16 23 C -0.26 0.04 4.86 60.52 0.29 0.33 16 24 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 26 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 27 H 0.08 0.15 7.96 -51.93 -0.41 -0.26 16 28 H 0.07 0.04 7.96 -51.93 -0.41 -0.37 16 29 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 30 H 0.07 -0.16 7.99 -51.93 -0.42 -0.57 16 31 H 0.08 -0.14 8.00 -51.93 -0.42 -0.56 16 32 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 33 H 0.08 0.03 7.96 -51.93 -0.41 -0.38 16 34 H 0.05 -0.07 7.78 -51.93 -0.40 -0.48 16 35 H 0.08 -0.02 8.03 -51.93 -0.42 -0.43 16 36 H 0.38 -0.55 7.38 -185.15 -1.37 -1.92 16 37 H 0.13 -0.49 7.96 -51.93 -0.41 -0.91 16 38 H 0.38 -1.86 8.70 45.56 0.40 -1.47 16 39 H 0.16 -0.48 7.11 -52.49 -0.37 -0.85 16 40 H 0.09 0.09 7.99 -51.93 -0.41 -0.33 16 41 H 0.05 -0.07 7.92 -51.93 -0.41 -0.48 16 LS Contribution 363.99 15.07 5.49 5.49 Total: 0.00 -6.78 363.99 -10.34 -17.12 By element: Atomic # 1 Polarization: -2.91 SS G_CDS: -6.35 Total: -9.26 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 1.06 Total: 4.48 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -0.09 Total: -1.14 kcal Atomic # 8 Polarization: -2.49 SS G_CDS: -0.37 Total: -2.86 kcal Atomic # 14 Polarization: -3.81 SS G_CDS: -6.49 Total: -10.31 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.17 Total: -2.22 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -1.41 Total: -1.30 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -6.78 -10.34 -17.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13431040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.838 kcal (2) G-P(sol) polarization free energy of solvation -6.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds