Wall clock time and date at job start Sun Mar 7 2021 09:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86303 * 109.98121 * 2 1 4 4 C 1.87520 * 110.00512 * 121.31279 * 2 1 3 5 5 C 1.53930 * 106.84959 * 163.10056 * 4 2 1 6 6 C 1.52619 * 109.31494 * 302.79618 * 5 4 2 7 7 N 1.46361 * 111.88888 * 76.52023 * 6 5 4 8 8 N 1.36604 * 111.00130 * 156.80467 * 7 6 5 9 9 C 1.34767 * 120.00058 * 235.44142 * 8 7 6 10 10 O 1.21658 * 120.00382 * 354.98411 * 9 8 7 11 11 C 1.47045 * 120.00004 * 174.98574 * 9 8 7 12 12 C 1.36217 * 123.49611 * 180.02562 * 11 9 8 13 13 Cl 1.73599 * 124.60470 * 359.97438 * 12 11 9 14 14 S 1.70442 * 110.79422 * 179.97438 * 12 11 9 15 15 C 1.75498 * 92.46580 * 359.97438 * 14 12 11 16 16 C 1.50698 * 124.68810 * 179.97438 * 15 14 12 17 17 O 1.42900 * 109.47064 * 245.02486 * 16 15 14 18 18 Si 1.86301 * 109.46977 * 5.02243 * 16 15 14 19 19 H 1.48506 * 109.47026 * 60.00402 * 18 16 15 20 20 H 1.48501 * 109.46941 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47413 * 300.00390 * 18 16 15 22 22 C 1.32692 * 110.62714 * 0.23179 * 15 14 12 23 23 C 1.47722 * 111.30666 * 280.98210 * 7 6 5 24 24 H 1.08991 * 109.47466 * 298.68464 * 1 2 3 25 25 H 1.09001 * 109.47378 * 58.68648 * 1 2 3 26 26 H 1.09003 * 109.46635 * 178.68304 * 1 2 3 27 27 H 1.09007 * 109.47365 * 181.31316 * 3 2 1 28 28 H 1.09000 * 109.47610 * 301.31258 * 3 2 1 29 29 H 1.09003 * 109.47114 * 61.31267 * 3 2 1 30 30 H 1.09000 * 109.97434 * 43.76633 * 4 2 1 31 31 H 1.09002 * 110.05507 * 282.48133 * 4 2 1 32 32 H 1.09002 * 109.49548 * 182.84558 * 5 4 2 33 33 H 1.09001 * 109.49432 * 62.75200 * 5 4 2 34 34 H 1.09004 * 108.99704 * 315.90317 * 6 5 4 35 35 H 1.08992 * 108.93914 * 197.09957 * 6 5 4 36 36 H 0.97005 * 119.99505 * 55.43496 * 8 7 6 37 37 H 1.09003 * 109.47289 * 125.02743 * 16 15 14 38 38 H 0.96699 * 113.99940 * 59.99878 * 17 16 15 39 39 H 1.07997 * 123.45198 * 179.76939 * 22 15 14 40 40 H 1.09004 * 109.94880 * 179.68301 * 23 7 6 41 41 H 1.08998 * 109.94823 * 300.93486 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4996 1.7509 0.0000 4 6 2.5045 -0.9158 1.5054 5 6 3.9816 -1.2489 1.2290 6 6 4.0832 -2.0635 -0.0576 7 7 3.9263 -1.2259 -1.2475 8 7 4.5044 -1.8113 -2.3380 9 6 5.4350 -1.1429 -3.0475 10 8 5.6945 0.0136 -2.7732 11 6 6.1368 -1.8114 -4.1533 12 6 7.0887 -1.2046 -4.9157 13 17 7.6202 0.4350 -4.7086 14 16 7.6871 -2.2737 -6.1006 15 6 6.6373 -3.5744 -5.5658 16 6 6.5912 -4.9483 -6.1833 17 8 5.3111 -5.1585 -6.7827 18 14 7.9169 -5.0889 -7.4847 19 1 9.2472 -4.8706 -6.8618 20 1 7.8711 -6.4426 -8.0936 21 1 7.6888 -4.0656 -8.5363 22 6 5.8857 -3.1793 -4.5461 23 6 2.5043 -0.9181 -1.5035 24 1 -0.3634 0.4932 0.9015 25 1 -0.3634 0.5341 -0.8780 26 1 -0.3633 -1.0275 -0.0236 27 1 3.5893 1.7413 -0.0236 28 1 2.1218 2.2749 -0.8779 29 1 2.1601 2.2609 0.9015 30 1 1.9367 -1.8345 1.6523 31 1 2.4244 -0.2835 2.3897 32 1 4.3854 -1.8284 2.0593 33 1 4.5488 -0.3245 1.1202 34 1 3.3056 -2.8274 -0.0563 35 1 5.0580 -2.5500 -0.0922 36 1 4.2452 -2.7081 -2.6015 37 1 6.7586 -5.6994 -5.4114 38 1 5.0946 -4.5247 -7.4802 39 1 5.1622 -3.8155 -4.0582 40 1 2.4135 -0.2898 -2.3896 41 1 1.9430 -1.8420 -1.6424 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13431040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:16:19 Heat of formation + Delta-G solvation = -37.858819 kcal Electronic energy + Delta-G solvation = -24140.520245 eV Core-core repulsion = 20525.943572 eV Total energy + Delta-G solvation = -3614.576672 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 348.064 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.23390 -39.30453 -38.42894 -37.90877 -36.94813 -34.88978 -32.00197 -31.35047 -29.32372 -28.34558 -27.56029 -26.96046 -26.25640 -24.04269 -22.22557 -21.85183 -20.81466 -19.45641 -18.70568 -17.95483 -17.40618 -16.83033 -16.41588 -16.17730 -15.98379 -15.58640 -15.00277 -14.95278 -14.70710 -14.69096 -14.43072 -14.19389 -14.18837 -13.95768 -13.79358 -13.48641 -13.18777 -13.10777 -12.98323 -12.94535 -12.63678 -12.45711 -12.25307 -12.14153 -12.01258 -11.93932 -11.77888 -11.28034 -10.79806 -10.78311 -10.56775 -10.31000 -10.18911 -9.93696 -9.73614 -9.67046 -0.67628 -0.26715 0.40544 0.70535 0.97972 1.07231 1.39235 1.45273 1.51296 1.84382 1.89926 1.92675 2.16044 2.22583 2.63323 3.23640 3.44666 3.59968 3.80045 3.84294 4.03731 4.17082 4.36553 4.44778 4.55648 4.56091 4.70262 4.73721 4.77665 4.80637 4.82669 4.85464 4.85798 4.92914 4.94029 5.12154 5.32352 5.49026 5.58749 5.66508 5.83934 6.19670 6.38491 6.62268 7.49116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.091 2.909 3 C -0.465 4.465 4 C -0.411 4.411 5 C -0.103 4.103 6 C 0.026 3.974 7 N -0.299 5.299 8 N -0.570 5.570 9 C 0.585 3.415 10 O -0.538 6.538 11 C -0.161 4.161 12 C -0.133 4.133 13 Cl 0.004 6.996 14 S 0.236 5.764 15 C -0.224 4.224 16 C -0.027 4.027 17 O -0.541 6.541 18 Si 0.899 3.101 19 H -0.239 1.239 20 H -0.234 1.234 21 H -0.233 1.233 22 C -0.065 4.065 23 C -0.271 4.271 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.392 0.608 37 H 0.150 0.850 38 H 0.392 0.608 39 H 0.183 0.817 40 H 0.074 0.926 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.665 -6.634 -0.413 7.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.280 2.720 3 C -0.571 4.571 4 C -0.497 4.497 5 C -0.142 4.142 6 C -0.101 4.101 7 N -0.116 5.116 8 N -0.314 5.314 9 C 0.371 3.629 10 O -0.414 6.414 11 C -0.182 4.182 12 C -0.280 4.280 13 Cl 0.033 6.967 14 S 0.501 5.499 15 C -0.341 4.341 16 C -0.141 4.141 17 O -0.348 6.348 18 Si 0.719 3.281 19 H -0.162 1.162 20 H -0.157 1.157 21 H -0.156 1.156 22 C -0.094 4.094 23 C -0.442 4.442 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.167 0.833 38 H 0.242 0.758 39 H 0.200 0.800 40 H 0.093 0.907 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.414 -5.666 -1.533 5.884 hybrid contribution -1.550 -0.061 0.718 1.709 sum -1.964 -5.727 -0.815 6.109 Atomic orbital electron populations 1.26148 1.20066 1.05131 1.04901 0.78310 0.65192 0.64807 0.63681 1.26350 1.06011 1.20795 1.03899 1.26400 0.99997 1.08841 1.14476 1.21206 0.97284 1.00470 0.95202 1.22588 1.02741 0.95384 0.89398 1.62931 1.14750 1.39582 0.94303 1.45249 1.40827 1.18079 1.27277 1.17497 0.78824 0.85550 0.81039 1.90836 1.64749 1.17421 1.68432 1.20307 1.01414 0.95975 1.00478 1.25599 1.03488 0.94269 1.04636 1.98428 1.88117 1.13858 1.96273 1.83394 1.38461 0.99394 1.28623 1.24997 1.03807 1.01487 1.03829 1.24357 0.94294 0.91737 1.03689 1.86533 1.33866 1.58095 1.56287 0.86176 0.78265 0.84061 0.79553 1.16244 1.15700 1.15594 1.21144 1.00168 0.91844 0.96199 1.28279 0.90415 1.07796 1.17734 0.90387 0.91310 0.90325 0.92491 0.92212 0.90929 0.89251 0.89693 0.89987 0.91992 0.91678 0.90449 0.76669 0.83312 0.75840 0.80035 0.90736 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.98 8.65 113.37 0.98 2.96 16 2 Si 1.09 -4.12 11.99 68.60 0.82 -3.30 16 3 C -0.47 -1.14 8.65 113.37 0.98 -0.16 16 4 C -0.41 1.76 5.03 72.30 0.36 2.12 16 5 C -0.10 0.14 5.74 30.78 0.18 0.32 16 6 C 0.03 -0.03 5.38 86.28 0.46 0.43 16 7 N -0.30 -0.92 4.15 -334.15 -1.39 -2.31 16 8 N -0.57 -1.51 4.68 -176.15 -0.83 -2.33 16 9 C 0.59 5.04 7.89 86.55 0.68 5.72 16 10 O -0.54 -9.15 15.24 -4.22 -0.06 -9.21 16 11 C -0.16 -0.67 5.98 -19.84 -0.12 -0.79 16 12 C -0.13 -0.74 6.87 67.35 0.46 -0.28 16 13 Cl 0.00 0.04 27.20 -2.72 -0.07 -0.03 16 14 S 0.24 -0.08 20.19 -56.49 -1.14 -1.22 16 15 C -0.22 0.84 5.65 24.51 0.14 0.98 16 16 C -0.03 0.18 2.94 71.24 0.21 0.39 16 17 O -0.54 3.17 12.88 -148.98 -1.92 1.25 16 18 Si 0.90 -4.55 26.20 68.60 1.80 -2.75 16 19 H -0.24 0.82 7.11 99.48 0.71 1.53 16 20 H -0.23 0.63 7.11 99.48 0.71 1.34 16 21 H -0.23 1.07 7.11 99.48 0.71 1.78 16 22 C -0.07 0.19 9.75 22.70 0.22 0.41 16 23 C -0.27 0.08 4.86 127.53 0.62 0.69 16 24 H 0.08 -0.36 7.96 -2.39 -0.02 -0.37 16 25 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 26 H 0.08 -0.45 7.96 -2.39 -0.02 -0.47 16 27 H 0.06 0.39 7.96 -2.38 -0.02 0.37 16 28 H 0.06 0.21 7.96 -2.39 -0.02 0.19 16 29 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 30 H 0.09 -0.59 7.99 -2.39 -0.02 -0.61 16 31 H 0.08 -0.39 8.00 -2.39 -0.02 -0.41 16 32 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 34 H 0.07 -0.33 7.78 -2.38 -0.02 -0.35 16 35 H 0.08 -0.05 8.03 -2.39 -0.02 -0.07 16 36 H 0.39 -1.50 7.38 -215.49 -1.59 -3.09 16 37 H 0.15 -1.50 7.96 -2.39 -0.02 -1.52 16 38 H 0.39 -4.49 8.70 -74.06 -0.64 -5.14 16 39 H 0.18 -1.52 7.11 -2.91 -0.02 -1.54 16 40 H 0.07 0.23 7.99 -2.38 -0.02 0.21 16 41 H 0.07 -0.28 7.92 -2.39 -0.02 -0.30 16 Total: 0.00 -17.90 363.99 1.97 -15.93 By element: Atomic # 1 Polarization: -8.41 SS G_CDS: -0.42 Total: -8.83 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 5.18 Total: 12.80 kcal Atomic # 7 Polarization: -2.43 SS G_CDS: -2.21 Total: -4.64 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -1.98 Total: -7.96 kcal Atomic # 14 Polarization: -8.67 SS G_CDS: 2.62 Total: -6.05 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -1.14 Total: -1.22 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -0.07 Total: -0.03 kcal Total: -17.90 1.97 -15.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13431040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.931 kcal (2) G-P(sol) polarization free energy of solvation -17.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds