Wall clock time and date at job start Sun Mar 7 2021 09:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86298 * 110.06402 * 2 1 4 4 C 1.87531 * 110.00162 * 238.63736 * 2 1 3 5 5 C 1.53933 * 106.84841 * 196.90251 * 4 2 1 6 6 C 1.52619 * 109.31210 * 57.20185 * 5 4 2 7 7 N 1.46357 * 111.89431 * 283.47954 * 6 5 4 8 8 N 1.36603 * 111.00067 * 203.19462 * 7 6 5 9 9 C 1.34780 * 119.99690 * 111.09853 * 8 7 6 10 10 O 1.21613 * 120.00274 * 354.99824 * 9 8 7 11 11 C 1.47375 * 119.99553 * 174.71125 * 9 8 7 12 12 C 1.36418 * 127.19653 * 0.30537 * 11 9 8 13 13 O 1.33654 * 108.39860 * 179.97438 * 12 11 9 14 14 C 1.34211 * 110.90787 * 0.02562 * 13 12 11 15 15 C 1.50695 * 125.43727 * 179.97438 * 14 13 12 16 16 O 1.42902 * 109.47371 * 244.97488 * 15 14 13 17 17 Si 1.86299 * 109.47289 * 4.97348 * 15 14 13 18 18 H 1.48504 * 109.46837 * 60.00079 * 17 15 14 19 19 H 1.48496 * 109.47456 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47060 * 300.00340 * 17 15 14 21 21 C 1.34176 * 109.12709 * 359.73092 * 14 13 12 22 22 C 1.47725 * 111.30584 * 79.02024 * 7 6 5 23 23 H 1.08995 * 109.47077 * 298.63947 * 1 2 3 24 24 H 1.09005 * 109.46995 * 58.63253 * 1 2 3 25 25 H 1.08997 * 109.47427 * 178.63358 * 1 2 3 26 26 H 1.08995 * 109.47345 * 181.36345 * 3 2 1 27 27 H 1.09005 * 109.47189 * 301.36322 * 3 2 1 28 28 H 1.08997 * 109.47140 * 61.36154 * 3 2 1 29 29 H 1.09002 * 109.97552 * 316.23569 * 4 2 1 30 30 H 1.09003 * 109.97302 * 77.47838 * 4 2 1 31 31 H 1.08994 * 109.49680 * 177.15783 * 5 4 2 32 32 H 1.08998 * 109.49404 * 297.21747 * 5 4 2 33 33 H 1.08999 * 108.99772 * 162.85212 * 6 5 4 34 34 H 1.09003 * 108.99774 * 44.09813 * 6 5 4 35 35 H 0.96993 * 120.00067 * 291.10545 * 8 7 6 36 36 H 1.07997 * 125.79855 * 359.95813 * 12 11 9 37 37 H 1.08997 * 109.47590 * 124.97461 * 15 14 13 38 38 H 0.96701 * 114.00152 * 59.99452 * 16 15 14 39 39 H 1.08008 * 127.02774 * 180.26876 * 21 14 13 40 40 H 1.08996 * 109.94834 * 59.06228 * 22 7 6 41 41 H 1.08999 * 109.94486 * 180.23841 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5021 1.7499 0.0000 4 6 2.5044 -0.9171 -1.5047 5 6 3.9816 -1.2502 -1.2281 6 6 4.0831 -2.0636 0.0593 7 7 3.9262 -1.2251 1.2485 8 7 4.5043 -1.8096 2.3394 9 6 5.6123 -1.2701 2.8852 10 8 6.1497 -0.3173 2.3539 11 6 6.1689 -1.8310 4.1292 12 6 5.6891 -2.8894 4.8437 13 8 6.4809 -3.0761 5.9042 14 6 7.4761 -2.1758 5.9233 15 6 8.5545 -2.0877 6.9722 16 8 8.4255 -0.8563 7.6857 17 14 8.3846 -3.5137 8.1590 18 1 8.5187 -4.7933 7.4175 19 1 9.4476 -3.4272 9.1922 20 1 7.0524 -3.4576 8.8127 21 6 7.3606 -1.3701 4.8566 22 6 2.5043 -0.9170 1.5042 23 1 -0.3633 0.4925 0.9019 24 1 -0.3633 0.5350 -0.8775 25 1 -0.3634 -1.0273 -0.0245 26 1 3.5917 1.7388 -0.0245 27 1 2.1243 2.2747 -0.8775 28 1 2.1641 2.2602 0.9019 29 1 1.9366 -1.8360 -1.6508 30 1 2.4231 -0.2848 -2.3889 31 1 4.3853 -1.8303 -2.0578 32 1 4.5489 -0.3257 -1.1206 33 1 5.0572 -2.5513 0.0949 34 1 3.3054 -2.8274 0.0586 35 1 4.1174 -2.6130 2.7212 36 1 4.8174 -3.4764 4.5949 37 1 9.5323 -2.1288 6.4924 38 1 7.5776 -0.7511 8.1386 39 1 8.0095 -0.5495 4.5881 40 1 1.9429 -1.8407 1.6439 41 1 2.4134 -0.2892 2.3906 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_13456056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:16:30 Heat of formation + Delta-G solvation = -54.681345 kcal Electronic energy + Delta-G solvation = -22200.620316 eV Core-core repulsion = 18821.043278 eV Total energy + Delta-G solvation = -3379.577038 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.72900 -40.75113 -38.32834 -38.04374 -34.95641 -33.94537 -32.29318 -31.03134 -29.43683 -28.43197 -27.63557 -26.78186 -25.63174 -23.80964 -22.26540 -21.88256 -20.95457 -19.47541 -18.43487 -17.77368 -17.50310 -17.31513 -16.68520 -16.32786 -15.82582 -15.40319 -15.17587 -14.91339 -14.83517 -14.61843 -14.32274 -14.11184 -13.98184 -13.86965 -13.61755 -13.59520 -13.29521 -13.17389 -13.02257 -12.91078 -12.22928 -12.09563 -12.08662 -12.04043 -11.33376 -10.90448 -10.85409 -10.76718 -10.63225 -10.44982 -10.21798 -9.83252 -9.68440 0.23968 0.90511 0.99244 1.31717 1.39004 1.41929 1.70240 1.72578 1.78439 1.86799 2.04303 2.44693 2.51283 3.18478 3.33948 3.40799 3.59355 3.89928 3.94068 4.09844 4.27401 4.32743 4.40452 4.48928 4.58969 4.59822 4.62748 4.63372 4.68617 4.76637 4.78090 4.84911 4.90929 5.02601 5.23477 5.23823 5.35985 5.39740 5.67094 5.74653 5.82159 6.29394 6.34995 6.44522 7.57335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.034 2.966 3 C -0.444 4.444 4 C -0.410 4.410 5 C -0.101 4.101 6 C 0.025 3.975 7 N -0.274 5.274 8 N -0.585 5.585 9 C 0.602 3.398 10 O -0.504 6.504 11 C -0.231 4.231 12 C 0.028 3.972 13 O -0.171 6.171 14 C -0.061 4.061 15 C -0.041 4.041 16 O -0.528 6.528 17 Si 0.960 3.040 18 H -0.248 1.248 19 H -0.245 1.245 20 H -0.249 1.249 21 C -0.118 4.118 22 C -0.260 4.260 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.374 0.626 36 H 0.212 0.788 37 H 0.137 0.863 38 H 0.381 0.619 39 H 0.165 0.835 40 H 0.054 0.946 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 -3.808 0.651 5.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.226 2.774 3 C -0.552 4.552 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.103 4.103 7 N -0.090 5.090 8 N -0.330 5.330 9 C 0.389 3.611 10 O -0.377 6.377 11 C -0.237 4.237 12 C -0.042 4.042 13 O -0.067 6.067 14 C -0.109 4.109 15 C -0.151 4.151 16 O -0.334 6.334 17 Si 0.780 3.220 18 H -0.171 1.171 19 H -0.168 1.168 20 H -0.172 1.172 21 C -0.138 4.138 22 C -0.433 4.433 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.213 0.787 36 H 0.228 0.772 37 H 0.155 0.845 38 H 0.229 0.771 39 H 0.182 0.818 40 H 0.072 0.928 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.478 -3.504 0.816 4.369 hybrid contribution -1.365 -0.928 -0.043 1.651 sum -3.843 -4.432 0.773 5.917 Atomic orbital electron populations 1.26119 1.20309 1.04561 1.04852 0.79186 0.65792 0.67675 0.64728 1.26033 1.07347 1.17699 1.04165 1.26386 1.00760 1.08069 1.14429 1.21181 0.96531 1.01215 0.94994 1.22602 1.02134 0.95190 0.90348 1.62969 1.13880 1.38169 0.93965 1.45431 1.29139 1.29312 1.29088 1.17039 0.78941 0.82805 0.82289 1.90804 1.58633 1.26527 1.61767 1.21516 1.01111 1.01464 0.99639 1.24439 0.95678 0.97809 0.86284 1.83683 1.32959 1.48447 1.41647 1.22784 0.93420 0.93372 1.01306 1.24420 0.96683 0.97759 0.96241 1.86591 1.41384 1.37343 1.68055 0.85489 0.81818 0.76010 0.78680 1.17093 1.16835 1.17194 1.22537 0.97025 1.01048 0.93151 1.28087 0.90529 1.07079 1.17601 0.91052 0.90663 0.91221 0.90312 0.91308 0.91350 0.90725 0.90054 0.90859 0.90156 0.90213 0.93805 0.78742 0.77198 0.84499 0.77097 0.81756 0.92761 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.98 8.65 101.05 0.87 1.85 16 2 Si 1.03 -2.42 11.99 -169.99 -2.04 -4.45 16 3 C -0.44 0.09 8.65 101.05 0.87 0.96 16 4 C -0.41 0.71 5.04 37.64 0.19 0.90 16 5 C -0.10 0.04 5.74 -26.44 -0.15 -0.11 16 6 C 0.03 0.00 5.38 -4.31 -0.02 -0.03 16 7 N -0.27 -0.30 4.15 -56.97 -0.24 -0.54 16 8 N -0.58 -0.42 4.70 30.42 0.14 -0.28 16 9 C 0.60 2.15 7.91 -12.54 -0.10 2.05 16 10 O -0.50 -4.02 17.31 5.27 0.09 -3.93 16 11 C -0.23 -0.37 6.31 -103.27 -0.65 -1.03 16 12 C 0.03 -0.04 11.61 30.08 0.35 0.31 16 13 O -0.17 -0.02 8.90 7.66 0.07 0.05 16 14 C -0.06 -0.03 6.18 -35.74 -0.22 -0.25 16 15 C -0.04 0.04 2.97 36.00 0.11 0.15 16 16 O -0.53 0.20 12.88 -35.23 -0.45 -0.25 16 17 Si 0.96 -1.17 27.38 -169.99 -4.65 -5.83 16 18 H -0.25 0.04 7.11 56.52 0.40 0.44 16 19 H -0.25 0.06 7.11 56.52 0.40 0.47 16 20 H -0.25 0.13 7.11 56.52 0.40 0.53 16 21 C -0.12 -0.24 10.90 -37.45 -0.41 -0.64 16 22 C -0.26 0.26 4.85 60.52 0.29 0.55 16 23 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 24 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 25 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 26 H 0.08 0.11 7.96 -51.93 -0.41 -0.30 16 27 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 28 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 29 H 0.07 -0.17 7.99 -51.93 -0.42 -0.58 16 30 H 0.08 -0.15 7.99 -51.93 -0.42 -0.57 16 31 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.08 0.06 7.96 -51.93 -0.41 -0.35 16 33 H 0.08 0.05 8.03 -51.93 -0.42 -0.37 16 34 H 0.04 -0.07 7.78 -51.93 -0.40 -0.47 16 35 H 0.37 -0.95 7.81 -185.16 -1.45 -2.40 16 36 H 0.21 -1.19 7.48 -52.49 -0.39 -1.58 16 37 H 0.14 -0.33 7.96 -51.93 -0.41 -0.74 16 38 H 0.38 -1.37 8.70 45.56 0.40 -0.98 16 39 H 0.16 0.37 8.06 -52.48 -0.42 -0.05 16 40 H 0.05 -0.13 7.92 -51.93 -0.41 -0.54 16 41 H 0.09 -0.04 7.99 -51.93 -0.42 -0.46 16 LS Contribution 344.44 15.07 5.19 5.19 Total: 0.00 -8.72 344.44 -7.63 -16.34 By element: Atomic # 1 Polarization: -4.16 SS G_CDS: -6.87 Total: -11.03 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 1.13 Total: 4.72 kcal Atomic # 7 Polarization: -0.73 SS G_CDS: -0.09 Total: -0.82 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.29 Total: -4.12 kcal Atomic # 14 Polarization: -3.59 SS G_CDS: -6.69 Total: -10.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -8.72 -7.63 -16.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13456056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.337 kcal (2) G-P(sol) polarization free energy of solvation -8.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds