Wall clock time and date at job start Sun Mar 7 2021 09:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86298 * 110.06402 * 2 1 4 4 C 1.87531 * 110.00162 * 238.63736 * 2 1 3 5 5 C 1.53933 * 106.84841 * 196.90251 * 4 2 1 6 6 C 1.52619 * 109.31210 * 57.20185 * 5 4 2 7 7 N 1.46357 * 111.89431 * 283.47954 * 6 5 4 8 8 N 1.36603 * 111.00067 * 203.19462 * 7 6 5 9 9 C 1.34780 * 119.99690 * 111.09853 * 8 7 6 10 10 O 1.21613 * 120.00274 * 354.99824 * 9 8 7 11 11 C 1.47375 * 119.99553 * 174.71125 * 9 8 7 12 12 C 1.36418 * 127.19653 * 0.30537 * 11 9 8 13 13 O 1.33654 * 108.39860 * 179.97438 * 12 11 9 14 14 C 1.34211 * 110.90787 * 0.02562 * 13 12 11 15 15 C 1.50695 * 125.43727 * 179.97438 * 14 13 12 16 16 O 1.42902 * 109.47371 * 244.97488 * 15 14 13 17 17 Si 1.86299 * 109.47289 * 4.97348 * 15 14 13 18 18 H 1.48504 * 109.46837 * 60.00079 * 17 15 14 19 19 H 1.48496 * 109.47456 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47060 * 300.00340 * 17 15 14 21 21 C 1.34176 * 109.12709 * 359.73092 * 14 13 12 22 22 C 1.47725 * 111.30584 * 79.02024 * 7 6 5 23 23 H 1.08995 * 109.47077 * 298.63947 * 1 2 3 24 24 H 1.09005 * 109.46995 * 58.63253 * 1 2 3 25 25 H 1.08997 * 109.47427 * 178.63358 * 1 2 3 26 26 H 1.08995 * 109.47345 * 181.36345 * 3 2 1 27 27 H 1.09005 * 109.47189 * 301.36322 * 3 2 1 28 28 H 1.08997 * 109.47140 * 61.36154 * 3 2 1 29 29 H 1.09002 * 109.97552 * 316.23569 * 4 2 1 30 30 H 1.09003 * 109.97302 * 77.47838 * 4 2 1 31 31 H 1.08994 * 109.49680 * 177.15783 * 5 4 2 32 32 H 1.08998 * 109.49404 * 297.21747 * 5 4 2 33 33 H 1.08999 * 108.99772 * 162.85212 * 6 5 4 34 34 H 1.09003 * 108.99774 * 44.09813 * 6 5 4 35 35 H 0.96993 * 120.00067 * 291.10545 * 8 7 6 36 36 H 1.07997 * 125.79855 * 359.95813 * 12 11 9 37 37 H 1.08997 * 109.47590 * 124.97461 * 15 14 13 38 38 H 0.96701 * 114.00152 * 59.99452 * 16 15 14 39 39 H 1.08008 * 127.02774 * 180.26876 * 21 14 13 40 40 H 1.08996 * 109.94834 * 59.06228 * 22 7 6 41 41 H 1.08999 * 109.94486 * 180.23841 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5021 1.7499 0.0000 4 6 2.5044 -0.9171 -1.5047 5 6 3.9816 -1.2502 -1.2281 6 6 4.0831 -2.0636 0.0593 7 7 3.9262 -1.2251 1.2485 8 7 4.5043 -1.8096 2.3394 9 6 5.6123 -1.2701 2.8852 10 8 6.1497 -0.3173 2.3539 11 6 6.1689 -1.8310 4.1292 12 6 5.6891 -2.8894 4.8437 13 8 6.4809 -3.0761 5.9042 14 6 7.4761 -2.1758 5.9233 15 6 8.5545 -2.0877 6.9722 16 8 8.4255 -0.8563 7.6857 17 14 8.3846 -3.5137 8.1590 18 1 8.5187 -4.7933 7.4175 19 1 9.4476 -3.4272 9.1922 20 1 7.0524 -3.4576 8.8127 21 6 7.3606 -1.3701 4.8566 22 6 2.5043 -0.9170 1.5042 23 1 -0.3633 0.4925 0.9019 24 1 -0.3633 0.5350 -0.8775 25 1 -0.3634 -1.0273 -0.0245 26 1 3.5917 1.7388 -0.0245 27 1 2.1243 2.2747 -0.8775 28 1 2.1641 2.2602 0.9019 29 1 1.9366 -1.8360 -1.6508 30 1 2.4231 -0.2848 -2.3889 31 1 4.3853 -1.8303 -2.0578 32 1 4.5489 -0.3257 -1.1206 33 1 5.0572 -2.5513 0.0949 34 1 3.3054 -2.8274 0.0586 35 1 4.1174 -2.6130 2.7212 36 1 4.8174 -3.4764 4.5949 37 1 9.5323 -2.1288 6.4924 38 1 7.5776 -0.7511 8.1386 39 1 8.0095 -0.5495 4.5881 40 1 1.9429 -1.8407 1.6439 41 1 2.4134 -0.2892 2.3906 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13456056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:16:29 Heat of formation + Delta-G solvation = -52.820072 kcal Electronic energy + Delta-G solvation = -22200.539605 eV Core-core repulsion = 18821.043278 eV Total energy + Delta-G solvation = -3379.496327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.75342 -40.89142 -38.47683 -37.98922 -35.02838 -34.00391 -32.31455 -31.03192 -29.31949 -28.34714 -27.54896 -26.74840 -25.65375 -23.82302 -22.33068 -21.85485 -21.05490 -19.46861 -18.44575 -17.75663 -17.50698 -17.39739 -16.71059 -16.35358 -15.77109 -15.41813 -15.28233 -14.93999 -14.78163 -14.64514 -14.31498 -14.05181 -13.96876 -13.80151 -13.61270 -13.50075 -13.18478 -13.11442 -12.96936 -12.83962 -12.17496 -12.04267 -12.03700 -11.97504 -11.46226 -10.97036 -10.84883 -10.80689 -10.59556 -10.42874 -10.22740 -9.83451 -9.64912 0.23368 0.82178 1.06711 1.37296 1.47393 1.50782 1.77720 1.83145 1.90842 1.93228 2.16083 2.27535 2.62223 3.28128 3.36927 3.51574 3.59192 3.93996 4.01136 4.14369 4.34894 4.43175 4.46792 4.51575 4.52887 4.67705 4.74036 4.80591 4.81679 4.85473 4.85847 4.86870 4.92269 5.09388 5.13024 5.30143 5.47812 5.59561 5.66574 5.80021 5.81370 6.18095 6.39832 6.56812 7.47699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.096 2.904 3 C -0.468 4.468 4 C -0.415 4.415 5 C -0.104 4.104 6 C 0.026 3.974 7 N -0.303 5.303 8 N -0.571 5.571 9 C 0.601 3.399 10 O -0.564 6.564 11 C -0.262 4.262 12 C 0.061 3.939 13 O -0.172 6.172 14 C -0.055 4.055 15 C -0.043 4.043 16 O -0.543 6.543 17 Si 1.004 2.996 18 H -0.260 1.260 19 H -0.260 1.260 20 H -0.255 1.255 21 C -0.145 4.145 22 C -0.270 4.270 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.394 0.606 36 H 0.258 0.742 37 H 0.147 0.853 38 H 0.394 0.606 39 H 0.149 0.851 40 H 0.076 0.924 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 -5.715 1.002 7.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.284 2.716 3 C -0.573 4.573 4 C -0.500 4.500 5 C -0.143 4.143 6 C -0.101 4.101 7 N -0.119 5.119 8 N -0.316 5.316 9 C 0.390 3.610 10 O -0.442 6.442 11 C -0.268 4.268 12 C -0.009 4.009 13 O -0.068 6.068 14 C -0.103 4.103 15 C -0.153 4.153 16 O -0.351 6.351 17 Si 0.825 3.175 18 H -0.184 1.184 19 H -0.183 1.183 20 H -0.179 1.179 21 C -0.165 4.165 22 C -0.441 4.441 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.235 0.765 36 H 0.274 0.726 37 H 0.164 0.836 38 H 0.244 0.756 39 H 0.167 0.833 40 H 0.094 0.906 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.337 -5.417 1.180 7.039 hybrid contribution -0.795 -0.315 -0.146 0.868 sum -5.132 -5.732 1.034 7.763 Atomic orbital electron populations 1.26130 1.19765 1.05236 1.04986 0.78246 0.65240 0.64630 0.63448 1.26375 1.05951 1.20908 1.04081 1.26460 0.99724 1.08933 1.14922 1.21198 0.97486 1.00379 0.95214 1.22588 1.02223 0.95430 0.89877 1.62935 1.15247 1.39360 0.94389 1.45244 1.28168 1.29459 1.28703 1.17375 0.79068 0.82079 0.82510 1.90766 1.60584 1.29283 1.63582 1.21430 1.02042 1.03402 0.99944 1.25222 0.95316 0.96097 0.84270 1.83720 1.32929 1.48169 1.41982 1.22931 0.93586 0.92845 1.00941 1.24616 0.96749 0.97819 0.96102 1.86561 1.42521 1.37755 1.68236 0.84866 0.80656 0.74653 0.77328 1.18376 1.18350 1.17885 1.22566 0.97838 1.01643 0.94427 1.28274 0.89493 1.08256 1.18101 0.91010 0.90513 0.90243 0.92643 0.90964 0.91861 0.89277 0.89831 0.90433 0.92195 0.91451 0.91607 0.76513 0.72594 0.83584 0.75647 0.83283 0.90558 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.68 8.65 113.37 0.98 3.66 16 2 Si 1.10 -5.49 11.99 68.60 0.82 -4.67 16 3 C -0.47 -0.63 8.65 113.37 0.98 0.35 16 4 C -0.41 1.73 5.04 72.30 0.36 2.09 16 5 C -0.10 0.02 5.74 30.78 0.18 0.20 16 6 C 0.03 -0.01 5.38 86.28 0.46 0.46 16 7 N -0.30 -0.81 4.15 -334.15 -1.39 -2.19 16 8 N -0.57 -0.90 4.70 -175.91 -0.83 -1.72 16 9 C 0.60 5.26 7.91 86.65 0.69 5.95 16 10 O -0.56 -10.89 17.31 -4.07 -0.07 -10.96 16 11 C -0.26 -1.05 6.31 -18.99 -0.12 -1.17 16 12 C 0.06 -0.24 11.61 67.39 0.78 0.54 16 13 O -0.17 0.15 8.90 4.49 0.04 0.19 16 14 C -0.05 -0.07 6.18 24.76 0.15 0.08 16 15 C -0.04 0.08 2.97 71.23 0.21 0.29 16 16 O -0.54 0.16 12.88 -148.98 -1.92 -1.76 16 17 Si 1.00 -2.81 27.38 68.60 1.88 -0.93 16 18 H -0.26 0.23 7.11 99.48 0.71 0.94 16 19 H -0.26 0.15 7.11 99.48 0.71 0.86 16 20 H -0.26 0.48 7.11 99.48 0.71 1.18 16 21 C -0.14 -0.84 10.90 23.65 0.26 -0.58 16 22 C -0.27 0.71 4.85 127.53 0.62 1.33 16 23 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 24 H 0.08 -0.43 7.96 -2.38 -0.02 -0.45 16 25 H 0.08 -0.58 7.96 -2.39 -0.02 -0.60 16 26 H 0.05 0.33 7.96 -2.39 -0.02 0.31 16 27 H 0.07 0.00 7.96 -2.38 -0.02 -0.02 16 28 H 0.06 0.11 7.96 -2.39 -0.02 0.10 16 29 H 0.09 -0.59 7.99 -2.39 -0.02 -0.61 16 30 H 0.08 -0.36 7.99 -2.39 -0.02 -0.38 16 31 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.06 0.23 7.96 -2.39 -0.02 0.21 16 33 H 0.07 0.14 8.03 -2.39 -0.02 0.12 16 34 H 0.07 -0.32 7.78 -2.39 -0.02 -0.34 16 35 H 0.39 -2.58 7.81 -215.50 -1.68 -4.27 16 36 H 0.26 -3.82 7.48 -2.91 -0.02 -3.84 16 37 H 0.15 -0.63 7.96 -2.39 -0.02 -0.65 16 38 H 0.39 -2.72 8.70 -74.06 -0.64 -3.36 16 39 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 40 H 0.08 -0.54 7.92 -2.39 -0.02 -0.56 16 41 H 0.08 -0.08 7.99 -2.39 -0.02 -0.10 16 Total: 0.00 -23.23 344.44 3.56 -19.68 By element: Atomic # 1 Polarization: -10.29 SS G_CDS: -0.54 Total: -10.82 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 5.56 Total: 13.21 kcal Atomic # 7 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -1.95 Total: -12.54 kcal Atomic # 14 Polarization: -8.30 SS G_CDS: 2.70 Total: -5.60 kcal Total: -23.23 3.56 -19.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13456056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.144 kcal (2) G-P(sol) polarization free energy of solvation -23.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds