Wall clock time and date at job start Sun Mar 7 2021 09:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37869 * 126.45491 * 2 1 4 4 C 1.46680 * 126.24007 * 0.03828 * 3 2 1 5 5 O 1.21698 * 119.99579 * 359.97438 * 4 3 2 6 6 N 1.34767 * 120.00570 * 179.97438 * 4 3 2 7 7 N 1.36599 * 120.00243 * 174.98926 * 6 4 3 8 8 C 1.46356 * 111.00260 * 235.43518 * 7 6 4 9 9 C 1.52622 * 111.88873 * 156.80515 * 8 7 6 10 10 C 1.53927 * 109.31229 * 76.52638 * 9 8 7 11 11 Si 1.87523 * 106.84655 * 302.79131 * 10 9 8 12 12 C 1.86300 * 110.00041 * 163.10038 * 11 10 9 13 13 C 1.86295 * 110.00592 * 284.40155 * 11 10 9 14 14 C 1.47728 * 110.99716 * 111.08853 * 7 6 4 15 15 N 1.37652 * 107.53099 * 180.02562 * 3 2 1 16 16 C 1.35529 * 108.64508 * 359.97438 * 15 3 2 17 17 C 1.50700 * 125.56514 * 179.97438 * 16 15 3 18 18 O 1.42897 * 109.47024 * 120.03227 * 17 16 15 19 19 Si 1.86298 * 109.47225 * 0.03040 * 17 16 15 20 20 H 1.48504 * 109.47072 * 179.97438 * 19 17 16 21 21 H 1.48500 * 109.46859 * 299.99597 * 19 17 16 22 22 H 1.48498 * 109.47080 * 59.99951 * 19 17 16 23 23 C 1.35454 * 108.86990 * 0.24873 * 16 15 3 24 24 H 1.08999 * 109.46999 * 89.99704 * 1 2 3 25 25 H 1.08998 * 109.46972 * 209.99824 * 1 2 3 26 26 H 1.08999 * 109.46629 * 329.99819 * 1 2 3 27 27 H 0.97009 * 119.99843 * 354.99479 * 6 4 3 28 28 H 1.09000 * 108.99739 * 277.42345 * 8 7 6 29 29 H 1.09000 * 108.99743 * 36.26623 * 8 7 6 30 30 H 1.09008 * 109.49547 * 196.47336 * 9 8 7 31 31 H 1.08999 * 109.50245 * 316.56969 * 9 8 7 32 32 H 1.09000 * 109.97885 * 62.12628 * 10 9 8 33 33 H 1.09004 * 109.97950 * 183.36848 * 10 9 8 34 34 H 1.08998 * 109.47558 * 60.00156 * 12 11 10 35 35 H 1.09002 * 109.47269 * 180.02562 * 12 11 10 36 36 H 1.09003 * 109.47544 * 299.99624 * 12 11 10 37 37 H 1.09005 * 109.46631 * 59.99910 * 13 11 10 38 38 H 1.08995 * 109.47779 * 179.97438 * 13 11 10 39 39 H 1.09001 * 109.47237 * 300.00527 * 13 11 10 40 40 H 1.09005 * 109.94576 * 303.85758 * 14 7 6 41 41 H 1.09000 * 109.94843 * 65.11242 * 14 7 6 42 42 H 0.97002 * 125.67607 * 179.97438 * 15 3 2 43 43 H 1.09007 * 109.47132 * 240.02598 * 17 16 15 44 44 H 0.96702 * 113.99782 * 299.99396 * 18 17 16 45 45 H 1.08004 * 126.06622 * 179.71718 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8899 2.5093 0.0008 5 8 0.7027 2.7767 0.0011 6 7 2.8037 3.4999 0.0012 7 7 2.4006 4.8010 -0.1014 8 6 3.0569 5.4663 -1.2278 9 6 2.2589 6.6701 -1.7211 10 6 2.4586 7.8464 -0.7486 11 14 1.9201 7.2485 0.9453 12 6 2.5840 8.3858 2.2631 13 6 0.0606 7.1845 1.0372 14 6 2.6350 5.5290 1.1625 15 7 3.6284 0.6625 -0.0006 16 6 3.6218 -0.6928 -0.0004 17 6 4.8434 -1.5753 -0.0014 18 8 4.8357 -2.4006 1.1651 19 14 6.3753 -0.5151 -0.0021 20 1 7.5791 -1.3848 -0.0025 21 1 6.3832 0.3424 -1.2144 22 1 6.3848 0.3419 1.2106 23 6 2.3379 -1.1246 -0.0052 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5139 27 1 3.7477 3.2889 0.0743 28 1 4.0462 5.8004 -0.9151 29 1 3.1653 4.7544 -2.0461 30 1 2.6074 6.9555 -2.7137 31 1 1.2010 6.4114 -1.7669 32 1 3.5092 8.1357 -0.7248 33 1 1.8462 8.6934 -1.0580 34 1 2.2013 9.3933 2.1002 35 1 2.2666 8.0303 3.2434 36 1 3.6730 8.3989 2.2170 37 1 -0.3173 6.4994 0.2783 38 1 -0.2427 6.8358 2.0243 39 1 -0.3464 8.1805 0.8624 40 1 2.1327 5.0186 1.9843 41 1 3.7047 5.5934 1.3617 42 1 4.4191 1.2244 -0.0011 43 1 4.8364 -2.2044 -0.8916 44 1 4.8413 -1.9066 1.9964 45 1 2.0136 -2.1548 -0.0106 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_13940406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:16:41 Heat of formation + Delta-G solvation = -31.391936 kcal Electronic energy + Delta-G solvation = -24431.772617 eV Core-core repulsion = 20995.386526 eV Total energy + Delta-G solvation = -3436.386090 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.58916 -40.59228 -38.41290 -37.75191 -35.05179 -33.62414 -32.21500 -30.80526 -29.44474 -28.42704 -28.27418 -27.68846 -26.91753 -24.76183 -22.44165 -22.02310 -21.54057 -20.34662 -19.80430 -18.31797 -17.97448 -16.92809 -16.87070 -16.57360 -15.73521 -15.61087 -15.40084 -15.01758 -14.89725 -14.61252 -14.49565 -14.22259 -14.13260 -13.89692 -13.86939 -13.62060 -13.44827 -13.35450 -13.29473 -13.17298 -13.05648 -12.94735 -12.58978 -12.47937 -12.18181 -12.15673 -12.09083 -11.32439 -10.89734 -10.75231 -10.65147 -10.43836 -10.19091 -9.80811 -9.76255 -9.12851 0.38651 0.81154 1.08784 1.12610 1.31966 1.58975 1.66027 1.69991 1.77502 1.90404 2.02414 2.45548 2.51255 3.25074 3.28184 3.57638 3.77489 3.86545 4.04178 4.21741 4.30242 4.34654 4.39544 4.41237 4.54035 4.60272 4.62742 4.65309 4.76940 4.81743 4.85989 4.91804 4.95458 4.98889 5.08789 5.18187 5.26473 5.31566 5.38840 5.49214 5.67710 5.68251 5.71415 5.95397 6.17291 6.25497 6.37113 6.44005 7.50466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.066 4.066 3 C -0.049 4.049 4 C 0.605 3.395 5 O -0.494 6.494 6 N -0.591 5.591 7 N -0.271 5.271 8 C 0.025 3.975 9 C -0.100 4.100 10 C -0.410 4.410 11 Si 1.032 2.968 12 C -0.450 4.450 13 C -0.443 4.443 14 C -0.262 4.262 15 N -0.543 5.543 16 C 0.011 3.989 17 C -0.049 4.049 18 O -0.529 6.529 19 Si 0.921 3.079 20 H -0.234 1.234 21 H -0.247 1.247 22 H -0.249 1.249 23 C -0.168 4.168 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.367 0.633 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.407 0.593 43 H 0.131 0.869 44 H 0.378 0.622 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.459 1.785 0.154 4.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 C -0.162 4.162 4 C 0.393 3.607 5 O -0.365 6.365 6 N -0.335 5.335 7 N -0.087 5.087 8 C -0.103 4.103 9 C -0.138 4.138 10 C -0.496 4.496 11 Si 1.225 2.775 12 C -0.559 4.559 13 C -0.551 4.551 14 C -0.435 4.435 15 N -0.144 5.144 16 C -0.105 4.105 17 C -0.161 4.161 18 O -0.333 6.333 19 Si 0.742 3.258 20 H -0.156 1.156 21 H -0.170 1.170 22 H -0.172 1.172 23 C -0.192 4.192 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.205 0.795 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.246 0.754 43 H 0.149 0.851 44 H 0.226 0.774 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.966 2.072 -0.396 4.493 hybrid contribution 1.672 0.324 0.589 1.802 sum 5.638 2.396 0.193 6.129 Atomic orbital electron populations 1.20401 0.88793 1.03246 1.02597 1.20035 0.96117 0.90370 1.00935 1.20177 0.83239 0.93234 1.19577 1.16806 0.85706 0.81673 0.76503 1.90826 1.15461 1.82542 1.47683 1.45536 1.07892 1.02451 1.77614 1.62999 1.52673 0.89700 1.03312 1.22585 0.96598 0.97500 0.93616 1.21183 1.01562 0.92292 0.98809 1.26387 1.05620 1.01956 1.15678 0.79204 0.68017 0.63413 0.66868 1.26123 1.06393 1.10683 1.12657 1.26016 1.19643 1.04428 1.05032 1.28114 1.04702 1.16415 0.94273 1.42040 1.07152 1.06533 1.58658 1.20908 0.98016 0.82432 1.09098 1.24427 1.00382 0.98454 0.92877 1.86574 1.96771 1.34868 1.15130 0.86101 0.78684 0.79496 0.81556 1.15621 1.17018 1.17214 1.20633 0.90350 0.99153 1.09112 0.91168 0.91636 0.89974 0.79527 0.93689 0.90106 0.90759 0.90106 0.90735 0.89986 0.90659 0.91033 0.91301 0.90255 0.91315 0.91351 0.88986 0.93019 0.75445 0.85090 0.77438 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.22 9.83 36.01 0.35 0.13 16 2 C -0.07 -0.18 6.21 -104.16 -0.65 -0.83 16 3 C -0.05 -0.11 7.05 -81.98 -0.58 -0.69 16 4 C 0.61 2.14 7.89 -12.86 -0.10 2.04 16 5 O -0.49 -3.39 15.13 5.19 0.08 -3.31 16 6 N -0.59 -0.60 4.71 30.26 0.14 -0.45 16 7 N -0.27 -0.28 4.15 -56.97 -0.24 -0.52 16 8 C 0.02 -0.01 5.38 -4.31 -0.02 -0.04 16 9 C -0.10 0.09 5.74 -26.44 -0.15 -0.06 16 10 C -0.41 0.79 5.03 37.64 0.19 0.98 16 11 Si 1.03 -2.25 11.99 -169.99 -2.04 -4.29 16 12 C -0.45 0.86 8.65 101.05 0.87 1.73 16 13 C -0.44 0.04 8.65 101.05 0.87 0.92 16 14 C -0.26 0.12 4.86 60.52 0.29 0.42 16 15 N -0.54 0.19 5.47 -5.70 -0.03 0.15 16 16 C 0.01 0.00 6.11 -81.95 -0.50 -0.50 16 17 C -0.05 0.09 2.98 36.01 0.11 0.20 16 18 O -0.53 0.51 12.87 -35.23 -0.45 0.06 16 19 Si 0.92 -2.40 26.24 -169.99 -4.46 -6.86 16 20 H -0.23 0.25 7.11 56.52 0.40 0.65 16 21 H -0.25 0.57 7.11 56.52 0.40 0.97 16 22 H -0.25 0.65 7.11 56.52 0.40 1.05 16 23 C -0.17 -0.23 10.64 -39.98 -0.43 -0.66 16 24 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 25 H 0.06 0.07 8.14 -51.93 -0.42 -0.36 16 26 H 0.08 0.33 6.48 -51.93 -0.34 -0.01 16 27 H 0.37 -0.61 7.97 -185.15 -1.48 -2.09 16 28 H 0.04 -0.08 7.78 -51.93 -0.40 -0.49 16 29 H 0.08 -0.03 8.03 -51.93 -0.42 -0.45 16 30 H 0.07 -0.11 8.14 -51.92 -0.42 -0.54 16 31 H 0.08 0.00 7.96 -51.93 -0.41 -0.41 16 32 H 0.07 -0.18 7.99 -51.93 -0.42 -0.59 16 33 H 0.08 -0.17 8.00 -51.93 -0.42 -0.59 16 34 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 36 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 37 H 0.08 0.11 7.96 -51.93 -0.41 -0.30 16 38 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 39 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 40 H 0.09 0.05 7.99 -51.93 -0.41 -0.36 16 41 H 0.05 -0.08 7.92 -51.93 -0.41 -0.50 16 42 H 0.41 -1.11 5.99 -40.82 -0.24 -1.36 16 43 H 0.13 -0.36 7.96 -51.92 -0.41 -0.77 16 44 H 0.38 -1.51 8.70 45.56 0.40 -1.11 16 45 H 0.15 0.07 8.06 -52.48 -0.42 -0.35 16 LS Contribution 363.95 15.07 5.48 5.48 Total: 0.00 -7.28 363.95 -9.18 -16.46 By element: Atomic # 1 Polarization: -2.44 SS G_CDS: -7.93 Total: -10.38 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 0.27 Total: 3.64 kcal Atomic # 7 Polarization: -0.69 SS G_CDS: -0.13 Total: -0.82 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: -0.37 Total: -3.25 kcal Atomic # 14 Polarization: -4.65 SS G_CDS: -6.50 Total: -11.15 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -7.28 -9.18 -16.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13940406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.930 kcal (2) G-P(sol) polarization free energy of solvation -7.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds