Wall clock time and date at job start Sun Mar 7 2021 09:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37869 * 126.45491 * 2 1 4 4 C 1.46680 * 126.24007 * 0.03828 * 3 2 1 5 5 O 1.21698 * 119.99579 * 359.97438 * 4 3 2 6 6 N 1.34767 * 120.00570 * 179.97438 * 4 3 2 7 7 N 1.36599 * 120.00243 * 174.98926 * 6 4 3 8 8 C 1.46356 * 111.00260 * 235.43518 * 7 6 4 9 9 C 1.52622 * 111.88873 * 156.80515 * 8 7 6 10 10 C 1.53927 * 109.31229 * 76.52638 * 9 8 7 11 11 Si 1.87523 * 106.84655 * 302.79131 * 10 9 8 12 12 C 1.86300 * 110.00041 * 163.10038 * 11 10 9 13 13 C 1.86295 * 110.00592 * 284.40155 * 11 10 9 14 14 C 1.47728 * 110.99716 * 111.08853 * 7 6 4 15 15 N 1.37652 * 107.53099 * 180.02562 * 3 2 1 16 16 C 1.35529 * 108.64508 * 359.97438 * 15 3 2 17 17 C 1.50700 * 125.56514 * 179.97438 * 16 15 3 18 18 O 1.42897 * 109.47024 * 120.03227 * 17 16 15 19 19 Si 1.86298 * 109.47225 * 0.03040 * 17 16 15 20 20 H 1.48504 * 109.47072 * 179.97438 * 19 17 16 21 21 H 1.48500 * 109.46859 * 299.99597 * 19 17 16 22 22 H 1.48498 * 109.47080 * 59.99951 * 19 17 16 23 23 C 1.35454 * 108.86990 * 0.24873 * 16 15 3 24 24 H 1.08999 * 109.46999 * 89.99704 * 1 2 3 25 25 H 1.08998 * 109.46972 * 209.99824 * 1 2 3 26 26 H 1.08999 * 109.46629 * 329.99819 * 1 2 3 27 27 H 0.97009 * 119.99843 * 354.99479 * 6 4 3 28 28 H 1.09000 * 108.99739 * 277.42345 * 8 7 6 29 29 H 1.09000 * 108.99743 * 36.26623 * 8 7 6 30 30 H 1.09008 * 109.49547 * 196.47336 * 9 8 7 31 31 H 1.08999 * 109.50245 * 316.56969 * 9 8 7 32 32 H 1.09000 * 109.97885 * 62.12628 * 10 9 8 33 33 H 1.09004 * 109.97950 * 183.36848 * 10 9 8 34 34 H 1.08998 * 109.47558 * 60.00156 * 12 11 10 35 35 H 1.09002 * 109.47269 * 180.02562 * 12 11 10 36 36 H 1.09003 * 109.47544 * 299.99624 * 12 11 10 37 37 H 1.09005 * 109.46631 * 59.99910 * 13 11 10 38 38 H 1.08995 * 109.47779 * 179.97438 * 13 11 10 39 39 H 1.09001 * 109.47237 * 300.00527 * 13 11 10 40 40 H 1.09005 * 109.94576 * 303.85758 * 14 7 6 41 41 H 1.09000 * 109.94843 * 65.11242 * 14 7 6 42 42 H 0.97002 * 125.67607 * 179.97438 * 15 3 2 43 43 H 1.09007 * 109.47132 * 240.02598 * 17 16 15 44 44 H 0.96702 * 113.99782 * 299.99396 * 18 17 16 45 45 H 1.08004 * 126.06622 * 179.71718 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8899 2.5093 0.0008 5 8 0.7027 2.7767 0.0011 6 7 2.8037 3.4999 0.0012 7 7 2.4006 4.8010 -0.1014 8 6 3.0569 5.4663 -1.2278 9 6 2.2589 6.6701 -1.7211 10 6 2.4586 7.8464 -0.7486 11 14 1.9201 7.2485 0.9453 12 6 2.5840 8.3858 2.2631 13 6 0.0606 7.1845 1.0372 14 6 2.6350 5.5290 1.1625 15 7 3.6284 0.6625 -0.0006 16 6 3.6218 -0.6928 -0.0004 17 6 4.8434 -1.5753 -0.0014 18 8 4.8357 -2.4006 1.1651 19 14 6.3753 -0.5151 -0.0021 20 1 7.5791 -1.3848 -0.0025 21 1 6.3832 0.3424 -1.2144 22 1 6.3848 0.3419 1.2106 23 6 2.3379 -1.1246 -0.0052 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5139 27 1 3.7477 3.2889 0.0743 28 1 4.0462 5.8004 -0.9151 29 1 3.1653 4.7544 -2.0461 30 1 2.6074 6.9555 -2.7137 31 1 1.2010 6.4114 -1.7669 32 1 3.5092 8.1357 -0.7248 33 1 1.8462 8.6934 -1.0580 34 1 2.2013 9.3933 2.1002 35 1 2.2666 8.0303 3.2434 36 1 3.6730 8.3989 2.2170 37 1 -0.3173 6.4994 0.2783 38 1 -0.2427 6.8358 2.0243 39 1 -0.3464 8.1805 0.8624 40 1 2.1327 5.0186 1.9843 41 1 3.7047 5.5934 1.3617 42 1 4.4191 1.2244 -0.0011 43 1 4.8364 -2.2044 -0.8916 44 1 4.8413 -1.9066 1.9964 45 1 2.0136 -2.1548 -0.0106 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_13940406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:16:40 Heat of formation + Delta-G solvation = -27.663659 kcal Electronic energy + Delta-G solvation = -24431.610946 eV Core-core repulsion = 20995.386526 eV Total energy + Delta-G solvation = -3436.224420 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.158 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.67511 -40.70965 -38.53270 -37.68290 -35.08218 -33.73208 -32.28066 -30.82032 -29.34409 -28.39135 -28.35960 -27.60964 -26.92843 -24.74398 -22.50948 -22.02127 -21.58516 -20.46650 -19.85333 -18.35722 -17.93459 -16.96938 -16.88056 -16.50033 -15.78201 -15.66572 -15.41011 -15.02275 -14.81788 -14.60354 -14.45545 -14.30947 -14.01593 -13.98117 -13.80866 -13.60873 -13.52326 -13.45201 -13.20301 -13.12659 -13.01653 -12.97151 -12.60220 -12.27587 -12.07184 -12.06610 -11.98896 -11.40226 -10.90443 -10.81149 -10.53959 -10.37517 -10.25965 -9.85032 -9.77559 -9.23134 0.25085 0.98995 1.30163 1.33084 1.35651 1.57522 1.74382 1.79155 1.89825 1.93451 2.12365 2.26030 2.60281 3.30550 3.41204 3.67839 3.71769 3.97140 4.09514 4.14744 4.23399 4.37941 4.49992 4.55619 4.65239 4.70304 4.71147 4.79531 4.79594 4.82943 4.84332 4.84774 4.87590 4.90209 5.07774 5.11963 5.28957 5.33741 5.46033 5.56250 5.59552 5.65772 5.77198 5.81488 6.10118 6.21050 6.37166 6.63383 7.37741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.084 4.084 3 C -0.063 4.063 4 C 0.603 3.397 5 O -0.538 6.538 6 N -0.581 5.581 7 N -0.295 5.295 8 C 0.024 3.976 9 C -0.103 4.103 10 C -0.412 4.412 11 Si 1.094 2.906 12 C -0.455 4.455 13 C -0.465 4.465 14 C -0.274 4.274 15 N -0.531 5.531 16 C 0.027 3.973 17 C -0.052 4.052 18 O -0.543 6.543 19 Si 0.958 3.042 20 H -0.255 1.255 21 H -0.247 1.247 22 H -0.245 1.245 23 C -0.184 4.184 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.383 0.617 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.420 0.580 43 H 0.141 0.859 44 H 0.390 0.610 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.599 2.335 0.166 7.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.176 4.176 4 C 0.392 3.608 5 O -0.414 6.414 6 N -0.325 5.325 7 N -0.112 5.112 8 C -0.103 4.103 9 C -0.141 4.141 10 C -0.498 4.498 11 Si 1.282 2.718 12 C -0.563 4.563 13 C -0.570 4.570 14 C -0.445 4.445 15 N -0.132 5.132 16 C -0.090 4.090 17 C -0.163 4.163 18 O -0.349 6.349 19 Si 0.779 3.221 20 H -0.179 1.179 21 H -0.171 1.171 22 H -0.168 1.168 23 C -0.208 4.208 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.222 0.778 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.260 0.740 43 H 0.159 0.841 44 H 0.240 0.760 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.122 2.628 -0.371 6.673 hybrid contribution 1.002 0.098 0.597 1.170 sum 7.124 2.726 0.225 7.631 Atomic orbital electron populations 1.20333 0.89240 1.02798 1.02320 1.20226 0.96303 0.91279 1.01543 1.20004 0.84270 0.92603 1.20757 1.17025 0.85443 0.82480 0.75895 1.90799 1.17241 1.83274 1.50045 1.45384 1.08280 1.02391 1.76419 1.62986 1.54035 0.89711 1.04461 1.22622 0.97409 0.97372 0.92925 1.21206 1.00596 0.92685 0.99641 1.26412 1.06608 1.01626 1.15145 0.78283 0.64952 0.61879 0.66671 1.26156 1.06999 1.10750 1.12386 1.26334 1.22864 1.04043 1.03806 1.28333 1.05848 1.17138 0.93180 1.41979 1.06774 1.06695 1.57784 1.21199 0.98282 0.82480 1.07001 1.24649 0.99916 0.98591 0.93161 1.86549 1.96708 1.35708 1.15982 0.85574 0.76567 0.78456 0.81529 1.17855 1.17052 1.16794 1.20770 0.90856 0.99142 1.10040 0.91405 0.90416 0.91967 0.77800 0.91743 0.90552 0.89949 0.91754 0.89343 0.89542 0.90316 0.91272 0.90428 0.92357 0.92097 0.90838 0.90548 0.91333 0.73980 0.84132 0.76015 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 9.83 71.24 0.70 0.07 16 2 C -0.08 -0.57 6.21 -19.57 -0.12 -0.70 16 3 C -0.06 -0.35 7.05 40.35 0.28 -0.06 16 4 C 0.60 5.29 7.89 86.45 0.68 5.97 16 5 O -0.54 -8.98 15.13 -4.34 -0.07 -9.05 16 6 N -0.58 -1.55 4.71 -176.39 -0.83 -2.38 16 7 N -0.30 -0.80 4.15 -334.14 -1.39 -2.19 16 8 C 0.02 -0.04 5.38 86.28 0.46 0.43 16 9 C -0.10 0.20 5.74 30.78 0.18 0.38 16 10 C -0.41 2.00 5.03 72.30 0.36 2.36 16 11 Si 1.09 -4.87 11.99 68.60 0.82 -4.05 16 12 C -0.45 2.24 8.65 113.37 0.98 3.22 16 13 C -0.46 -0.71 8.65 113.37 0.98 0.27 16 14 C -0.27 0.22 4.86 127.53 0.62 0.84 16 15 N -0.53 0.53 5.47 -171.93 -0.94 -0.41 16 16 C 0.03 -0.02 6.11 41.34 0.25 0.23 16 17 C -0.05 0.24 2.98 71.24 0.21 0.46 16 18 O -0.54 1.52 12.87 -148.98 -1.92 -0.39 16 19 Si 0.96 -6.25 26.24 68.60 1.80 -4.45 16 20 H -0.25 0.71 7.11 99.48 0.71 1.42 16 21 H -0.25 1.57 7.11 99.48 0.71 2.28 16 22 H -0.24 1.75 7.11 99.48 0.71 2.46 16 23 C -0.18 -0.57 10.64 22.01 0.23 -0.34 16 24 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.06 0.69 6.48 -2.39 -0.02 0.68 16 27 H 0.38 -1.42 7.97 -215.49 -1.72 -3.13 16 28 H 0.06 -0.35 7.78 -2.39 -0.02 -0.37 16 29 H 0.08 -0.06 8.03 -2.39 -0.02 -0.08 16 30 H 0.08 -0.29 8.14 -2.38 -0.02 -0.31 16 31 H 0.06 0.09 7.96 -2.39 -0.02 0.07 16 32 H 0.09 -0.62 7.99 -2.39 -0.02 -0.64 16 33 H 0.09 -0.45 8.00 -2.38 -0.02 -0.47 16 34 H 0.08 -0.40 7.96 -2.39 -0.02 -0.42 16 35 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 36 H 0.08 -0.48 7.96 -2.39 -0.02 -0.50 16 37 H 0.06 0.33 7.96 -2.38 -0.02 0.31 16 38 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 39 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 40 H 0.08 0.18 7.99 -2.38 -0.02 0.16 16 41 H 0.07 -0.31 7.92 -2.39 -0.02 -0.33 16 42 H 0.42 -2.73 5.99 -92.71 -0.56 -3.28 16 43 H 0.14 -0.93 7.96 -2.38 -0.02 -0.95 16 44 H 0.39 -3.46 8.70 -74.06 -0.64 -4.11 16 45 H 0.16 0.19 8.06 -2.91 -0.02 0.17 16 Total: 0.00 -18.47 363.95 2.15 -16.32 By element: Atomic # 1 Polarization: -5.37 SS G_CDS: -1.16 Total: -6.53 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 5.83 Total: 13.13 kcal Atomic # 7 Polarization: -1.82 SS G_CDS: -3.16 Total: -4.98 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -1.98 Total: -9.44 kcal Atomic # 14 Polarization: -11.12 SS G_CDS: 2.62 Total: -8.50 kcal Total: -18.47 2.15 -16.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_13940406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.349 kcal (2) G-P(sol) polarization free energy of solvation -18.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds