Wall clock time and date at job start Sun Mar 7 2021 09:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86300 * 110.05958 * 2 1 4 4 C 1.87522 * 110.00213 * 238.63794 * 2 1 3 5 5 C 1.53934 * 106.84776 * 284.49838 * 4 2 1 6 6 C 1.52627 * 109.31005 * 302.79521 * 5 4 2 7 7 N 1.46530 * 111.93705 * 76.54573 * 6 5 4 8 8 N 1.36601 * 111.12684 * 156.83797 * 7 6 5 9 9 C 1.34780 * 119.99731 * 244.31145 * 8 7 6 10 10 O 1.21280 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.50694 * 119.99837 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.47251 * 179.97438 * 11 9 8 13 13 C 1.34852 * 125.88988 * 85.02015 * 12 11 9 14 14 C 1.40892 * 107.41386 * 180.02562 * 13 12 11 15 15 C 1.34844 * 107.42031 * 0.02562 * 14 13 12 16 16 C 1.50701 * 125.89064 * 180.02562 * 15 14 13 17 17 O 1.42906 * 109.46884 * 119.97582 * 16 15 14 18 18 Si 1.86305 * 109.47324 * 359.97438 * 16 15 14 19 19 H 1.48505 * 109.46747 * 300.00093 * 18 16 15 20 20 H 1.48499 * 109.46894 * 59.99532 * 18 16 15 21 21 H 1.48493 * 109.47395 * 179.97438 * 18 16 15 22 22 N 1.36342 * 108.21877 * 359.73878 * 15 14 13 23 23 C 1.47730 * 111.20480 * 281.03160 * 7 6 5 24 24 H 1.08998 * 109.47222 * 298.63822 * 1 2 3 25 25 H 1.09007 * 109.47203 * 58.63488 * 1 2 3 26 26 H 1.08996 * 109.47410 * 178.63624 * 1 2 3 27 27 H 1.09001 * 109.46718 * 181.35940 * 3 2 1 28 28 H 1.08994 * 109.47747 * 301.36054 * 3 2 1 29 29 H 1.09002 * 109.47179 * 61.36506 * 3 2 1 30 30 H 1.08998 * 109.98002 * 43.82883 * 4 2 1 31 31 H 1.09000 * 109.97611 * 165.07518 * 4 2 1 32 32 H 1.09000 * 109.50033 * 62.74607 * 5 4 2 33 33 H 1.08994 * 109.49732 * 182.81469 * 5 4 2 34 34 H 1.09002 * 108.99733 * 197.14019 * 6 5 4 35 35 H 1.08999 * 109.00124 * 315.90161 * 6 5 4 36 36 H 0.97001 * 120.00235 * 64.31553 * 8 7 6 37 37 H 1.08996 * 109.47235 * 299.99912 * 11 9 8 38 38 H 1.09007 * 109.47495 * 59.99564 * 11 9 8 39 39 H 1.07993 * 126.28922 * 0.02763 * 13 12 11 40 40 H 1.08006 * 126.28835 * 180.02562 * 14 13 12 41 41 H 1.09004 * 109.47237 * 239.97917 * 16 15 14 42 42 H 0.96702 * 113.99487 * 180.02562 * 17 16 15 43 43 H 0.96998 * 125.63385 * 180.26897 * 22 15 14 44 44 H 1.09002 * 109.94931 * 300.84441 * 23 7 6 45 45 H 1.08998 * 109.94981 * 179.67542 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7500 0.0000 4 6 2.5045 -0.9171 -1.5047 5 6 2.3105 -2.4189 -1.2280 6 6 3.0398 -2.7933 0.0594 7 7 2.3057 -2.3587 1.2507 8 7 2.6560 -3.1006 2.3428 9 6 1.7414 -3.8864 2.9452 10 8 0.6074 -3.9343 2.5178 11 6 2.1277 -4.7044 4.1503 12 6 0.9328 -5.4878 4.6297 13 6 0.5343 -6.6876 4.1606 14 6 -0.6188 -7.0596 4.8797 15 6 -0.8813 -6.0727 5.7603 16 6 -2.0256 -6.0445 6.7405 17 8 -1.5109 -5.9685 8.0715 18 14 -3.0408 -7.5955 6.5548 19 1 -3.5756 -7.6744 5.1716 20 1 -2.1875 -8.7807 6.8239 21 1 -4.1680 -7.5681 7.5211 22 7 0.0709 -5.1077 5.6153 23 6 2.5043 -0.9169 1.5043 24 1 -0.3633 0.4925 0.9019 25 1 -0.3634 0.5349 -0.8775 26 1 -0.3634 -1.0273 -0.0245 27 1 3.5917 1.7388 -0.0244 28 1 2.1244 2.2748 -0.8774 29 1 2.1640 2.2602 0.9020 30 1 1.9374 -0.6250 -2.3885 31 1 3.5620 -0.6977 -1.6516 32 1 1.2475 -2.6346 -1.1199 33 1 2.7165 -2.9971 -2.0580 34 1 3.1636 -3.8757 0.0951 35 1 4.0240 -2.3249 0.0587 36 1 3.5628 -3.0619 2.6849 37 1 2.9292 -5.3922 3.8809 38 1 2.4697 -4.0415 4.9451 39 1 1.0113 -7.2585 3.3778 40 1 -1.1880 -7.9682 4.7495 41 1 -2.6520 -5.1745 6.5429 42 1 -2.1933 -5.9470 8.7563 43 1 0.1249 -4.2856 6.1273 44 1 3.5646 -0.7065 1.6440 45 1 1.9456 -0.6147 2.3901 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_14644196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:16:51 Heat of formation + Delta-G solvation = -30.422503 kcal Electronic energy + Delta-G solvation = -23903.288213 eV Core-core repulsion = 20466.944160 eV Total energy + Delta-G solvation = -3436.344053 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.158 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.16624 -40.69969 -38.38936 -37.62639 -34.86623 -33.24616 -31.77981 -31.46911 -29.45088 -29.20478 -28.42824 -27.59287 -25.43539 -24.29443 -22.03023 -21.67353 -21.17472 -20.87871 -18.72324 -18.46485 -17.93334 -17.74274 -16.76954 -16.16154 -15.68232 -15.43199 -15.10841 -15.01082 -14.82581 -14.64295 -14.44428 -14.26197 -14.13250 -14.06179 -13.86577 -13.59919 -13.52304 -13.28834 -13.20716 -13.16115 -13.01733 -12.79630 -12.43455 -12.08388 -12.03161 -11.91918 -11.80251 -11.26169 -10.89056 -10.62478 -10.44731 -10.38901 -10.09418 -9.69311 -9.60193 -8.77332 1.13280 1.19926 1.46148 1.53053 1.64897 1.72947 1.79773 1.83113 1.99824 2.04152 2.28062 2.52064 2.56194 3.41430 3.42299 3.72095 3.94627 3.98256 4.01942 4.09349 4.15615 4.34577 4.37381 4.43118 4.49787 4.60407 4.63250 4.63963 4.67439 4.70208 4.78046 4.85374 4.91191 4.93062 5.02996 5.23750 5.36346 5.40074 5.41099 5.46309 5.67096 5.77818 6.16595 6.29966 6.37630 6.47666 6.53571 6.77695 7.64935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 1.031 2.969 3 C -0.450 4.450 4 C -0.410 4.410 5 C -0.101 4.101 6 C 0.026 3.974 7 N -0.276 5.276 8 N -0.590 5.590 9 C 0.525 3.475 10 O -0.497 6.497 11 C -0.067 4.067 12 C 0.036 3.964 13 C -0.170 4.170 14 C -0.193 4.193 15 C 0.037 3.963 16 C -0.063 4.063 17 O -0.551 6.551 18 Si 0.974 3.026 19 H -0.247 1.247 20 H -0.246 1.246 21 H -0.259 1.259 22 N -0.533 5.533 23 C -0.259 4.259 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.377 0.623 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.073 0.927 42 H 0.381 0.619 43 H 0.413 0.587 44 H 0.053 0.947 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.031 2.517 0.713 4.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.552 4.552 2 Si 1.224 2.776 3 C -0.558 4.558 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.102 4.102 7 N -0.092 5.092 8 N -0.336 5.336 9 C 0.310 3.690 10 O -0.368 6.368 11 C -0.109 4.109 12 C -0.077 4.077 13 C -0.194 4.194 14 C -0.218 4.218 15 C -0.077 4.077 16 C -0.172 4.172 17 O -0.357 6.357 18 Si 0.794 3.206 19 H -0.171 1.171 20 H -0.169 1.169 21 H -0.183 1.183 22 N -0.128 5.128 23 C -0.432 4.432 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.215 0.785 37 H 0.135 0.865 38 H 0.117 0.883 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.091 0.909 42 H 0.229 0.771 43 H 0.249 0.751 44 H 0.071 0.929 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.799 1.720 0.045 2.490 hybrid contribution 1.324 1.116 0.917 1.959 sum 3.123 2.836 0.962 4.327 Atomic orbital electron populations 1.26031 1.19887 1.05175 1.04075 0.79207 0.67947 0.65506 0.64911 1.26121 1.06311 1.18612 1.04802 1.26377 1.06073 1.02772 1.14389 1.21182 1.01973 0.95711 0.95057 1.22604 0.95788 1.01488 0.90309 1.63007 1.52418 0.99599 0.94160 1.45667 1.12988 1.46158 1.28752 1.20504 0.85288 0.79110 0.84119 1.90748 1.19374 1.62878 1.63792 1.20082 0.96196 0.98602 0.96062 1.19382 0.95723 0.96925 0.95695 1.20534 0.98996 0.96581 1.03323 1.20582 1.00655 0.99565 1.01033 1.19546 0.94635 0.92055 1.01434 1.24479 0.98117 1.11637 0.83010 1.86493 1.37271 1.97604 1.14358 0.85334 0.77395 0.76441 0.81442 1.17071 1.16877 1.18270 1.41715 1.22093 1.18882 1.30101 1.28047 1.04440 0.93438 1.17287 0.91442 0.91361 0.90343 0.91219 0.90696 0.91100 0.90111 0.90717 0.90246 0.90867 0.90198 0.93819 0.78513 0.86508 0.88253 0.84505 0.84584 0.90918 0.77091 0.75072 0.92899 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -0.03 8.65 101.05 0.87 0.85 16 2 Si 1.03 -2.18 11.99 -169.99 -2.04 -4.22 16 3 C -0.45 0.86 8.65 101.05 0.87 1.74 16 4 C -0.41 0.65 5.04 37.64 0.19 0.84 16 5 C -0.10 0.04 5.74 -26.44 -0.15 -0.11 16 6 C 0.03 -0.01 5.39 -4.22 -0.02 -0.03 16 7 N -0.28 -0.26 4.15 -56.85 -0.24 -0.49 16 8 N -0.59 -0.06 4.72 31.22 0.15 0.09 16 9 C 0.52 1.13 7.93 -10.99 -0.09 1.04 16 10 O -0.50 -3.49 16.36 5.56 0.09 -3.40 16 11 C -0.07 0.05 6.24 -29.04 -0.18 -0.13 16 12 C 0.04 0.09 5.66 -81.79 -0.46 -0.37 16 13 C -0.17 -0.63 10.77 -39.78 -0.43 -1.06 16 14 C -0.19 -0.77 9.37 -39.78 -0.37 -1.14 16 15 C 0.04 0.12 6.54 -81.79 -0.53 -0.41 16 16 C -0.06 -0.05 3.07 36.01 0.11 0.06 16 17 O -0.55 -0.36 12.86 -35.23 -0.45 -0.81 16 18 Si 0.97 0.33 25.87 -169.99 -4.40 -4.07 16 19 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 20 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 21 H -0.26 0.01 7.11 56.52 0.40 0.41 16 22 N -0.53 -1.36 6.07 -5.44 -0.03 -1.40 16 23 C -0.26 0.20 4.85 60.52 0.29 0.50 16 24 H 0.07 0.02 7.96 -51.93 -0.41 -0.40 16 25 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 26 H 0.08 0.14 7.96 -51.93 -0.41 -0.28 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.08 -0.14 7.99 -51.93 -0.42 -0.56 16 31 H 0.07 -0.15 7.99 -51.93 -0.42 -0.57 16 32 H 0.08 0.06 7.96 -51.93 -0.41 -0.35 16 33 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.08 0.01 8.04 -51.93 -0.42 -0.41 16 35 H 0.04 -0.06 7.78 -51.93 -0.40 -0.47 16 36 H 0.38 -1.07 8.83 -185.15 -1.63 -2.70 16 37 H 0.12 -0.35 8.14 -51.93 -0.42 -0.78 16 38 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 39 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 40 H 0.14 0.35 6.22 -52.48 -0.33 0.03 16 41 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 42 H 0.38 -1.48 8.74 45.56 0.40 -1.08 16 43 H 0.41 0.22 8.96 -40.82 -0.37 -0.15 16 44 H 0.05 -0.10 7.92 -51.93 -0.41 -0.51 16 45 H 0.09 -0.01 7.99 -51.93 -0.41 -0.42 16 LS Contribution 367.88 15.07 5.54 5.54 Total: 0.00 -9.62 367.88 -9.48 -19.09 By element: Atomic # 1 Polarization: -3.92 SS G_CDS: -8.20 Total: -12.12 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 0.10 Total: 1.77 kcal Atomic # 7 Polarization: -1.68 SS G_CDS: -0.12 Total: -1.80 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.36 Total: -4.21 kcal Atomic # 14 Polarization: -1.85 SS G_CDS: -6.44 Total: -8.29 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -9.62 -9.48 -19.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_14644196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.331 kcal (2) G-P(sol) polarization free energy of solvation -9.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds