Wall clock time and date at job start Sun Mar 7 2021 09:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86300 * 110.05958 * 2 1 4 4 C 1.87522 * 110.00213 * 238.63794 * 2 1 3 5 5 C 1.53934 * 106.84776 * 284.49838 * 4 2 1 6 6 C 1.52627 * 109.31005 * 302.79521 * 5 4 2 7 7 N 1.46530 * 111.93705 * 76.54573 * 6 5 4 8 8 N 1.36601 * 111.12684 * 156.83797 * 7 6 5 9 9 C 1.34780 * 119.99731 * 244.31145 * 8 7 6 10 10 O 1.21280 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.50694 * 119.99837 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.47251 * 179.97438 * 11 9 8 13 13 C 1.34852 * 125.88988 * 85.02015 * 12 11 9 14 14 C 1.40892 * 107.41386 * 180.02562 * 13 12 11 15 15 C 1.34844 * 107.42031 * 0.02562 * 14 13 12 16 16 C 1.50701 * 125.89064 * 180.02562 * 15 14 13 17 17 O 1.42906 * 109.46884 * 119.97582 * 16 15 14 18 18 Si 1.86305 * 109.47324 * 359.97438 * 16 15 14 19 19 H 1.48505 * 109.46747 * 300.00093 * 18 16 15 20 20 H 1.48499 * 109.46894 * 59.99532 * 18 16 15 21 21 H 1.48493 * 109.47395 * 179.97438 * 18 16 15 22 22 N 1.36342 * 108.21877 * 359.73878 * 15 14 13 23 23 C 1.47730 * 111.20480 * 281.03160 * 7 6 5 24 24 H 1.08998 * 109.47222 * 298.63822 * 1 2 3 25 25 H 1.09007 * 109.47203 * 58.63488 * 1 2 3 26 26 H 1.08996 * 109.47410 * 178.63624 * 1 2 3 27 27 H 1.09001 * 109.46718 * 181.35940 * 3 2 1 28 28 H 1.08994 * 109.47747 * 301.36054 * 3 2 1 29 29 H 1.09002 * 109.47179 * 61.36506 * 3 2 1 30 30 H 1.08998 * 109.98002 * 43.82883 * 4 2 1 31 31 H 1.09000 * 109.97611 * 165.07518 * 4 2 1 32 32 H 1.09000 * 109.50033 * 62.74607 * 5 4 2 33 33 H 1.08994 * 109.49732 * 182.81469 * 5 4 2 34 34 H 1.09002 * 108.99733 * 197.14019 * 6 5 4 35 35 H 1.08999 * 109.00124 * 315.90161 * 6 5 4 36 36 H 0.97001 * 120.00235 * 64.31553 * 8 7 6 37 37 H 1.08996 * 109.47235 * 299.99912 * 11 9 8 38 38 H 1.09007 * 109.47495 * 59.99564 * 11 9 8 39 39 H 1.07993 * 126.28922 * 0.02763 * 13 12 11 40 40 H 1.08006 * 126.28835 * 180.02562 * 14 13 12 41 41 H 1.09004 * 109.47237 * 239.97917 * 16 15 14 42 42 H 0.96702 * 113.99487 * 180.02562 * 17 16 15 43 43 H 0.96998 * 125.63385 * 180.26897 * 22 15 14 44 44 H 1.09002 * 109.94931 * 300.84441 * 23 7 6 45 45 H 1.08998 * 109.94981 * 179.67542 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7500 0.0000 4 6 2.5045 -0.9171 -1.5047 5 6 2.3105 -2.4189 -1.2280 6 6 3.0398 -2.7933 0.0594 7 7 2.3057 -2.3587 1.2507 8 7 2.6560 -3.1006 2.3428 9 6 1.7414 -3.8864 2.9452 10 8 0.6074 -3.9343 2.5178 11 6 2.1277 -4.7044 4.1503 12 6 0.9328 -5.4878 4.6297 13 6 0.5343 -6.6876 4.1606 14 6 -0.6188 -7.0596 4.8797 15 6 -0.8813 -6.0727 5.7603 16 6 -2.0256 -6.0445 6.7405 17 8 -1.5109 -5.9685 8.0715 18 14 -3.0408 -7.5955 6.5548 19 1 -3.5756 -7.6744 5.1716 20 1 -2.1875 -8.7807 6.8239 21 1 -4.1680 -7.5681 7.5211 22 7 0.0709 -5.1077 5.6153 23 6 2.5043 -0.9169 1.5043 24 1 -0.3633 0.4925 0.9019 25 1 -0.3634 0.5349 -0.8775 26 1 -0.3634 -1.0273 -0.0245 27 1 3.5917 1.7388 -0.0244 28 1 2.1244 2.2748 -0.8774 29 1 2.1640 2.2602 0.9020 30 1 1.9374 -0.6250 -2.3885 31 1 3.5620 -0.6977 -1.6516 32 1 1.2475 -2.6346 -1.1199 33 1 2.7165 -2.9971 -2.0580 34 1 3.1636 -3.8757 0.0951 35 1 4.0240 -2.3249 0.0587 36 1 3.5628 -3.0619 2.6849 37 1 2.9292 -5.3922 3.8809 38 1 2.4697 -4.0415 4.9451 39 1 1.0113 -7.2585 3.3778 40 1 -1.1880 -7.9682 4.7495 41 1 -2.6520 -5.1745 6.5429 42 1 -2.1933 -5.9470 8.7563 43 1 0.1249 -4.2856 6.1273 44 1 3.5646 -0.7065 1.6440 45 1 1.9456 -0.6147 2.3901 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_14644196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:16:51 Heat of formation + Delta-G solvation = -29.646632 kcal Electronic energy + Delta-G solvation = -23903.254569 eV Core-core repulsion = 20466.944160 eV Total energy + Delta-G solvation = -3436.310408 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.158 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.31974 -40.79397 -38.47857 -37.65423 -34.88913 -33.32242 -31.97028 -31.50451 -29.37475 -29.21714 -28.36357 -27.50773 -25.48675 -24.30904 -22.04928 -21.73650 -21.36948 -21.02281 -18.76545 -18.47831 -18.01768 -17.81883 -16.78400 -16.22000 -15.71875 -15.52874 -15.11684 -15.07339 -14.86348 -14.66821 -14.44007 -14.36902 -14.21391 -13.96872 -13.81532 -13.59206 -13.49479 -13.33592 -13.20282 -13.12237 -12.98214 -12.83574 -12.51069 -12.01967 -12.00901 -11.96537 -11.88240 -11.29547 -10.81392 -10.72822 -10.45650 -10.33624 -10.13678 -9.81788 -9.63827 -8.95057 1.03340 1.13604 1.48589 1.50014 1.59334 1.69757 1.83883 1.89819 1.95709 1.98192 2.25352 2.46397 2.62191 3.44352 3.46917 3.67774 3.96114 3.99166 4.04581 4.19852 4.22782 4.35959 4.43364 4.44441 4.54952 4.60452 4.68873 4.75559 4.78081 4.79091 4.80919 4.83976 4.84911 4.92371 5.10363 5.20980 5.26681 5.30359 5.47166 5.57759 5.64711 5.84612 5.97681 6.10256 6.32802 6.48288 6.67287 6.76817 7.62087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.092 2.908 3 C -0.454 4.454 4 C -0.414 4.414 5 C -0.104 4.104 6 C 0.027 3.973 7 N -0.304 5.304 8 N -0.579 5.579 9 C 0.525 3.475 10 O -0.556 6.556 11 C -0.060 4.060 12 C 0.035 3.965 13 C -0.198 4.198 14 C -0.219 4.219 15 C 0.021 3.979 16 C -0.061 4.061 17 O -0.565 6.565 18 Si 1.008 2.992 19 H -0.268 1.268 20 H -0.271 1.271 21 H -0.246 1.246 22 N -0.534 5.534 23 C -0.268 4.268 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.395 0.605 37 H 0.144 0.856 38 H 0.130 0.870 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.089 0.911 42 H 0.401 0.599 43 H 0.421 0.579 44 H 0.071 0.929 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 3.742 1.239 6.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.281 2.719 3 C -0.562 4.562 4 C -0.500 4.500 5 C -0.143 4.143 6 C -0.101 4.101 7 N -0.120 5.120 8 N -0.325 5.325 9 C 0.312 3.688 10 O -0.431 6.431 11 C -0.102 4.102 12 C -0.079 4.079 13 C -0.223 4.223 14 C -0.244 4.244 15 C -0.093 4.093 16 C -0.171 4.171 17 O -0.374 6.374 18 Si 0.830 3.170 19 H -0.193 1.193 20 H -0.195 1.195 21 H -0.169 1.169 22 N -0.129 5.129 23 C -0.440 4.440 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.235 0.765 37 H 0.162 0.838 38 H 0.148 0.852 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.107 0.893 42 H 0.252 0.748 43 H 0.259 0.741 44 H 0.089 0.911 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.405 2.964 0.608 4.555 hybrid contribution 0.812 0.722 0.737 1.313 sum 4.217 3.686 1.345 5.760 Atomic orbital electron populations 1.26356 1.23192 1.03576 1.03970 0.78286 0.64841 0.65048 0.63734 1.26144 1.06912 1.18226 1.04924 1.26447 1.07022 1.01756 1.14802 1.21197 1.00809 0.96870 0.95382 1.22593 0.96460 1.01207 0.89807 1.62968 1.53758 1.00540 0.94731 1.45536 1.13494 1.45197 1.28233 1.20988 0.84648 0.78828 0.84377 1.90729 1.21780 1.64951 1.65647 1.20189 0.95428 0.98977 0.95573 1.19836 0.96299 0.96744 0.95065 1.20799 0.99603 0.97770 1.04106 1.20831 1.01366 1.00286 1.01959 1.19964 0.95375 0.92066 1.01888 1.24487 0.97235 1.12505 0.82864 1.86440 1.38678 1.97624 1.14654 0.84849 0.76784 0.75060 0.80260 1.19261 1.19509 1.16946 1.41813 1.21875 1.19048 1.30152 1.28204 1.05579 0.92521 1.17673 0.91991 0.91015 0.92647 0.90334 0.90532 0.91092 0.89920 0.89386 0.92220 0.90402 0.90963 0.91965 0.76454 0.83791 0.85213 0.84047 0.84416 0.89324 0.74842 0.74091 0.91108 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -0.79 8.65 113.37 0.98 0.19 16 2 Si 1.09 -4.91 11.99 68.60 0.82 -4.08 16 3 C -0.45 2.35 8.65 113.37 0.98 3.34 16 4 C -0.41 1.59 5.04 72.30 0.36 1.95 16 5 C -0.10 0.05 5.74 30.79 0.18 0.22 16 6 C 0.03 -0.02 5.39 86.25 0.46 0.44 16 7 N -0.30 -0.61 4.15 -333.76 -1.39 -2.00 16 8 N -0.58 0.11 4.72 -173.53 -0.82 -0.71 16 9 C 0.52 2.44 7.93 87.65 0.69 3.13 16 10 O -0.56 -8.84 16.36 -3.03 -0.05 -8.89 16 11 C -0.06 0.13 6.24 29.10 0.18 0.32 16 12 C 0.03 0.20 5.66 41.08 0.23 0.43 16 13 C -0.20 -1.80 10.77 22.14 0.24 -1.56 16 14 C -0.22 -2.18 9.37 22.14 0.21 -1.97 16 15 C 0.02 0.16 6.54 41.08 0.27 0.43 16 16 C -0.06 -0.12 3.07 71.24 0.22 0.10 16 17 O -0.56 -0.56 12.86 -148.98 -1.92 -2.47 16 18 Si 1.01 1.46 25.87 68.60 1.77 3.24 16 19 H -0.27 -1.22 7.11 99.48 0.71 -0.51 16 20 H -0.27 -1.43 7.11 99.48 0.71 -0.72 16 21 H -0.25 0.19 7.11 99.48 0.71 0.90 16 22 N -0.53 -3.04 6.07 -171.12 -1.04 -4.08 16 23 C -0.27 0.57 4.85 127.53 0.62 1.19 16 24 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 25 H 0.07 0.02 7.96 -2.38 -0.02 0.00 16 26 H 0.05 0.35 7.96 -2.39 -0.02 0.33 16 27 H 0.08 -0.50 7.96 -2.39 -0.02 -0.52 16 28 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 29 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 30 H 0.08 -0.33 7.99 -2.39 -0.02 -0.34 16 31 H 0.09 -0.53 7.99 -2.39 -0.02 -0.55 16 32 H 0.06 0.21 7.96 -2.39 -0.02 0.19 16 33 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.07 0.04 8.04 -2.39 -0.02 0.02 16 35 H 0.06 -0.29 7.78 -2.39 -0.02 -0.31 16 36 H 0.40 -2.82 8.83 -215.49 -1.90 -4.72 16 37 H 0.14 -1.10 8.14 -2.39 -0.02 -1.12 16 38 H 0.13 -1.07 8.14 -2.38 -0.02 -1.09 16 39 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 40 H 0.14 1.08 6.22 -2.91 -0.02 1.06 16 41 H 0.09 -0.13 7.96 -2.39 -0.02 -0.15 16 42 H 0.40 -3.42 8.74 -74.06 -0.65 -4.07 16 43 H 0.42 0.50 8.96 -92.71 -0.83 -0.33 16 44 H 0.07 -0.41 7.92 -2.39 -0.02 -0.43 16 45 H 0.08 -0.02 7.99 -2.39 -0.02 -0.04 16 Total: 0.00 -24.48 367.88 1.39 -23.09 By element: Atomic # 1 Polarization: -10.68 SS G_CDS: -1.63 Total: -12.30 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.63 Total: 8.20 kcal Atomic # 7 Polarization: -3.54 SS G_CDS: -3.24 Total: -6.79 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -1.96 Total: -11.36 kcal Atomic # 14 Polarization: -3.44 SS G_CDS: 2.60 Total: -0.85 kcal Total: -24.48 1.39 -23.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_14644196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.552 kcal (2) G-P(sol) polarization free energy of solvation -24.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds