Wall clock time and date at job start Sun Mar 7 2021 09:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86298 * 109.98467 * 2 1 4 4 C 1.87530 * 110.00096 * 238.58895 * 2 1 3 5 5 C 1.53930 * 106.84477 * 284.49483 * 4 2 1 6 6 C 1.52624 * 109.31483 * 302.79523 * 5 4 2 7 7 N 1.46356 * 111.88739 * 76.52675 * 6 5 4 8 8 N 1.36605 * 110.99858 * 156.80524 * 7 6 5 9 9 C 1.34774 * 119.99747 * 244.34702 * 8 7 6 10 10 O 1.21280 * 120.00241 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99840 * 180.02562 * 9 8 7 12 12 C 1.53547 * 109.81847 * 279.13628 * 11 9 8 13 13 C 1.53035 * 108.56013 * 179.57686 * 12 11 9 14 14 C 1.50205 * 110.36674 * 49.47155 * 13 12 11 15 15 C 1.50700 * 118.54772 * 159.96925 * 14 13 12 16 16 O 1.42906 * 109.46952 * 70.02114 * 15 14 13 17 17 Si 1.86301 * 109.46825 * 190.01748 * 15 14 13 18 18 H 1.48504 * 109.47055 * 60.00343 * 17 15 14 19 19 H 1.48504 * 109.46726 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47389 * 299.99837 * 17 15 14 21 21 C 1.31115 * 122.90552 * 339.98366 * 14 13 12 22 22 N 1.38926 * 121.85011 * 0.41653 * 21 14 13 23 23 C 1.47725 * 111.30383 * 280.97501 * 7 6 5 24 24 H 1.09002 * 109.47148 * 298.68464 * 1 2 3 25 25 H 1.09001 * 109.46900 * 178.68616 * 1 2 3 26 26 H 1.09004 * 109.47198 * 58.68594 * 1 2 3 27 27 H 1.08995 * 109.47286 * 60.00140 * 3 2 1 28 28 H 1.08996 * 109.47244 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47364 * 299.99889 * 3 2 1 30 30 H 1.08994 * 109.97850 * 43.82775 * 4 2 1 31 31 H 1.09003 * 109.97080 * 165.16354 * 4 2 1 32 32 H 1.09009 * 109.49488 * 182.84717 * 5 4 2 33 33 H 1.09001 * 109.49998 * 62.75477 * 5 4 2 34 34 H 1.09001 * 108.99653 * 315.90632 * 6 5 4 35 35 H 1.08998 * 108.93323 * 197.10044 * 6 5 4 36 36 H 0.97003 * 120.00134 * 64.35048 * 8 7 6 37 37 H 1.08997 * 109.81510 * 39.99625 * 11 9 8 38 38 H 1.09003 * 109.62043 * 299.23173 * 12 11 9 39 39 H 1.08996 * 109.62230 * 59.78989 * 12 11 9 40 40 H 1.09007 * 109.27058 * 289.21747 * 13 12 11 41 41 H 1.09000 * 109.20427 * 169.67884 * 13 12 11 42 42 H 1.08993 * 109.47043 * 310.02089 * 15 14 13 43 43 H 0.96699 * 113.99863 * 60.00532 * 16 15 14 44 44 H 1.08000 * 119.07508 * 180.38101 * 21 14 13 45 45 H 0.96994 * 120.56533 * 166.65776 * 22 21 14 46 46 H 1.08995 * 109.95193 * 300.94460 * 23 7 6 47 47 H 1.09004 * 110.01722 * 179.71954 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5044 -0.9184 -1.5039 5 6 2.3105 -2.4199 -1.2259 6 6 3.0399 -2.7932 0.0617 7 7 2.3059 -2.3572 1.2505 8 7 2.6567 -3.0998 2.3421 9 6 1.7426 -3.8861 2.9442 10 8 0.6085 -3.9340 2.5172 11 6 2.1294 -4.7049 4.1488 12 6 2.8449 -5.9868 3.6990 13 6 3.2335 -6.7898 4.9425 14 6 2.0550 -6.9308 5.8630 15 6 2.0704 -8.0348 6.8887 16 8 3.0441 -7.7391 7.8921 17 14 0.3883 -8.1732 7.6774 18 1 -0.6235 -8.4804 6.6347 19 1 0.4033 -9.2614 8.6877 20 1 0.0440 -6.8885 8.3379 21 6 1.0133 -6.1362 5.8134 22 7 0.9232 -5.1023 4.8898 23 6 2.5044 -0.9156 1.5050 24 1 -0.3633 0.4933 0.9016 25 1 -0.3633 -1.0274 -0.0236 26 1 -0.3634 0.5341 -0.8780 27 1 2.1411 2.2679 0.8899 28 1 3.5896 1.7411 -0.0005 29 1 2.1410 2.2679 -0.8900 30 1 1.9374 -0.6271 -2.3880 31 1 3.5624 -0.7003 -1.6501 32 1 2.7170 -2.9989 -2.0553 33 1 1.2475 -2.6356 -1.1177 34 1 4.0241 -2.3247 0.0606 35 1 3.1625 -3.8757 0.0977 36 1 3.5637 -3.0612 2.6839 37 1 2.7857 -4.1230 4.7958 38 1 2.1757 -6.5801 3.0757 39 1 3.7408 -5.7273 3.1349 40 1 4.0401 -6.2756 5.4652 41 1 3.5741 -7.7795 4.6382 42 1 2.3232 -8.9777 6.4039 43 1 2.8819 -6.9118 8.3658 44 1 0.2022 -6.2900 6.5097 45 1 0.0788 -4.6504 4.7361 46 1 3.5646 -0.7051 1.6445 47 1 1.9456 -0.6127 2.3906 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_15413834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:17:02 Heat of formation + Delta-G solvation = -54.297700 kcal Electronic energy + Delta-G solvation = -24864.515606 eV Core-core repulsion = 21399.824769 eV Total energy + Delta-G solvation = -3464.690837 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42232 -39.90208 -38.43389 -37.22418 -35.01110 -33.26704 -33.17060 -31.44162 -29.46924 -28.46080 -27.75110 -27.43694 -25.52826 -24.72954 -23.53617 -22.00245 -21.68099 -19.42270 -19.29998 -18.34649 -17.94525 -16.99129 -16.81427 -16.33667 -16.02452 -15.58541 -15.38100 -15.23325 -14.94697 -14.78292 -14.75975 -14.49915 -14.19892 -14.14333 -13.96113 -13.89576 -13.64249 -13.32171 -13.20609 -13.08219 -13.02761 -12.89995 -12.31295 -12.14510 -12.08647 -12.07039 -11.92344 -11.60627 -11.31980 -11.22698 -10.92823 -10.67379 -10.45197 -10.22796 -10.10872 -9.78949 -8.46634 1.24891 1.27935 1.35308 1.46567 1.57957 1.59766 1.66641 1.74965 1.94374 1.99574 2.46895 2.58142 3.24993 3.52660 3.64079 3.75136 3.83073 3.89411 3.97045 4.05849 4.25754 4.29233 4.36260 4.43686 4.55116 4.59543 4.59960 4.61189 4.64834 4.71755 4.73508 4.75951 4.81446 4.87051 4.97459 4.98990 5.18832 5.20898 5.28159 5.31583 5.37632 5.55388 5.62966 5.69944 6.16750 6.22218 6.37752 6.73460 6.83400 7.45526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.444 4.444 2 Si 1.033 2.967 3 C -0.451 4.451 4 C -0.410 4.410 5 C -0.101 4.101 6 C 0.025 3.975 7 N -0.276 5.276 8 N -0.583 5.583 9 C 0.527 3.473 10 O -0.505 6.505 11 C 0.141 3.859 12 C -0.128 4.128 13 C -0.050 4.050 14 C -0.279 4.279 15 C -0.056 4.056 16 O -0.546 6.546 17 Si 0.938 3.062 18 H -0.252 1.252 19 H -0.257 1.257 20 H -0.256 1.256 21 C 0.133 3.867 22 N -0.731 5.731 23 C -0.260 4.260 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.379 0.621 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.372 0.628 44 H 0.128 0.872 45 H 0.409 0.591 46 H 0.054 0.946 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.211 2.983 -0.942 4.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.552 4.552 2 Si 1.226 2.774 3 C -0.559 4.559 4 C -0.497 4.497 5 C -0.139 4.139 6 C -0.103 4.103 7 N -0.092 5.092 8 N -0.328 5.328 9 C 0.312 3.688 10 O -0.377 6.377 11 C 0.030 3.970 12 C -0.166 4.166 13 C -0.087 4.087 14 C -0.290 4.290 15 C -0.168 4.168 16 O -0.350 6.350 17 Si 0.762 3.238 18 H -0.175 1.175 19 H -0.181 1.181 20 H -0.181 1.181 21 C 0.012 3.988 22 N -0.364 5.364 23 C -0.433 4.433 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.218 0.782 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.127 0.873 43 H 0.218 0.782 44 H 0.145 0.855 45 H 0.246 0.754 46 H 0.073 0.927 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.444 2.213 -1.163 2.887 hybrid contribution 1.279 0.948 0.253 1.612 sum 2.722 3.161 -0.910 4.270 Atomic orbital electron populations 1.26034 1.19875 1.05145 1.04145 0.79192 0.67933 0.65542 0.64756 1.26122 1.06318 1.18581 1.04858 1.26384 1.06134 1.02715 1.14429 1.21188 1.01926 0.95806 0.95000 1.22589 0.95909 1.01494 0.90264 1.63002 1.52469 0.99719 0.93998 1.45564 1.12978 1.45475 1.28740 1.20475 0.85302 0.78892 0.84154 1.90720 1.19519 1.63507 1.63939 1.20936 0.88827 0.95900 0.91362 1.21893 1.00486 0.95297 0.98973 1.19920 0.95630 1.00271 0.92866 1.20926 1.00117 1.02301 1.05644 1.24658 1.02925 0.99086 0.90100 1.86493 1.51751 1.45255 1.51539 0.85900 0.76458 0.80779 0.80637 1.17541 1.18097 1.18054 1.20431 0.97989 0.88567 0.91811 1.44244 1.10870 1.38492 1.42808 1.28070 1.04639 0.93099 1.17486 0.91382 0.90388 0.91323 0.91048 0.91202 0.90671 0.90052 0.90664 0.90815 0.90259 0.93649 0.90183 0.78246 0.89247 0.90387 0.90416 0.91329 0.90658 0.87297 0.78159 0.85525 0.75374 0.92724 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.22 8.65 101.05 0.87 1.09 16 2 Si 1.03 -2.70 11.99 -169.99 -2.04 -4.74 16 3 C -0.45 1.03 8.65 101.05 0.87 1.91 16 4 C -0.41 0.85 5.04 37.64 0.19 1.04 16 5 C -0.10 0.10 5.74 -26.44 -0.15 -0.05 16 6 C 0.03 -0.02 5.38 -4.31 -0.02 -0.04 16 7 N -0.28 -0.08 4.14 -56.97 -0.24 -0.31 16 8 N -0.58 0.22 4.71 31.22 0.15 0.37 16 9 C 0.53 0.82 7.19 -10.99 -0.08 0.74 16 10 O -0.51 -2.86 16.40 5.56 0.09 -2.77 16 11 C 0.14 -0.06 3.36 -68.51 -0.23 -0.29 16 12 C -0.13 0.11 5.48 -26.43 -0.14 -0.03 16 13 C -0.05 0.02 5.85 -28.10 -0.16 -0.14 16 14 C -0.28 -0.06 5.37 -101.34 -0.54 -0.61 16 15 C -0.06 0.00 2.81 36.01 0.10 0.10 16 16 O -0.55 -0.41 12.88 -35.23 -0.45 -0.86 16 17 Si 0.94 -0.03 25.21 -169.99 -4.29 -4.32 16 18 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 19 H -0.26 -0.43 7.11 56.52 0.40 -0.03 16 20 H -0.26 0.03 6.87 56.52 0.39 0.42 16 21 C 0.13 0.05 9.62 -16.08 -0.15 -0.11 16 22 N -0.73 -0.49 5.47 -55.34 -0.30 -0.79 16 23 C -0.26 0.34 4.86 60.52 0.29 0.64 16 24 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 25 H 0.08 0.08 7.96 -51.93 -0.41 -0.33 16 26 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 29 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 30 H 0.08 -0.18 7.99 -51.93 -0.42 -0.59 16 31 H 0.07 -0.19 7.99 -51.93 -0.42 -0.60 16 32 H 0.07 -0.11 8.14 -51.92 -0.42 -0.53 16 33 H 0.08 0.01 7.96 -51.93 -0.41 -0.40 16 34 H 0.05 -0.09 7.78 -51.93 -0.40 -0.50 16 35 H 0.08 -0.04 8.03 -51.93 -0.42 -0.46 16 36 H 0.38 -1.15 8.83 -185.15 -1.63 -2.78 16 37 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 38 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 39 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 40 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 41 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 42 H 0.11 -0.03 7.96 -51.93 -0.41 -0.45 16 43 H 0.37 -0.91 8.70 45.56 0.40 -0.51 16 44 H 0.13 -0.07 4.33 -52.49 -0.23 -0.30 16 45 H 0.41 0.41 8.10 -40.82 -0.33 0.08 16 46 H 0.05 -0.13 7.92 -51.93 -0.41 -0.54 16 47 H 0.09 -0.06 7.99 -51.93 -0.41 -0.48 16 LS Contribution 370.09 15.07 5.58 5.58 Total: 0.00 -7.01 370.09 -9.59 -16.59 By element: Atomic # 1 Polarization: -4.06 SS G_CDS: -8.93 Total: -12.98 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 0.84 Total: 4.24 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: -0.39 Total: -0.74 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: -0.36 Total: -3.63 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: -6.32 Total: -9.06 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -7.01 -9.59 -16.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_15413834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.705 kcal (2) G-P(sol) polarization free energy of solvation -7.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds