Wall clock time and date at job start Sun Mar 7 2021 09:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86298 * 109.98467 * 2 1 4 4 C 1.87530 * 110.00096 * 238.58895 * 2 1 3 5 5 C 1.53930 * 106.84477 * 284.49483 * 4 2 1 6 6 C 1.52624 * 109.31483 * 302.79523 * 5 4 2 7 7 N 1.46356 * 111.88739 * 76.52675 * 6 5 4 8 8 N 1.36605 * 110.99858 * 156.80524 * 7 6 5 9 9 C 1.34774 * 119.99747 * 244.34702 * 8 7 6 10 10 O 1.21280 * 120.00241 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99840 * 180.02562 * 9 8 7 12 12 C 1.53547 * 109.81847 * 279.13628 * 11 9 8 13 13 C 1.53035 * 108.56013 * 179.57686 * 12 11 9 14 14 C 1.50205 * 110.36674 * 49.47155 * 13 12 11 15 15 C 1.50700 * 118.54772 * 159.96925 * 14 13 12 16 16 O 1.42906 * 109.46952 * 70.02114 * 15 14 13 17 17 Si 1.86301 * 109.46825 * 190.01748 * 15 14 13 18 18 H 1.48504 * 109.47055 * 60.00343 * 17 15 14 19 19 H 1.48504 * 109.46726 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47389 * 299.99837 * 17 15 14 21 21 C 1.31115 * 122.90552 * 339.98366 * 14 13 12 22 22 N 1.38926 * 121.85011 * 0.41653 * 21 14 13 23 23 C 1.47725 * 111.30383 * 280.97501 * 7 6 5 24 24 H 1.09002 * 109.47148 * 298.68464 * 1 2 3 25 25 H 1.09001 * 109.46900 * 178.68616 * 1 2 3 26 26 H 1.09004 * 109.47198 * 58.68594 * 1 2 3 27 27 H 1.08995 * 109.47286 * 60.00140 * 3 2 1 28 28 H 1.08996 * 109.47244 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47364 * 299.99889 * 3 2 1 30 30 H 1.08994 * 109.97850 * 43.82775 * 4 2 1 31 31 H 1.09003 * 109.97080 * 165.16354 * 4 2 1 32 32 H 1.09009 * 109.49488 * 182.84717 * 5 4 2 33 33 H 1.09001 * 109.49998 * 62.75477 * 5 4 2 34 34 H 1.09001 * 108.99653 * 315.90632 * 6 5 4 35 35 H 1.08998 * 108.93323 * 197.10044 * 6 5 4 36 36 H 0.97003 * 120.00134 * 64.35048 * 8 7 6 37 37 H 1.08997 * 109.81510 * 39.99625 * 11 9 8 38 38 H 1.09003 * 109.62043 * 299.23173 * 12 11 9 39 39 H 1.08996 * 109.62230 * 59.78989 * 12 11 9 40 40 H 1.09007 * 109.27058 * 289.21747 * 13 12 11 41 41 H 1.09000 * 109.20427 * 169.67884 * 13 12 11 42 42 H 1.08993 * 109.47043 * 310.02089 * 15 14 13 43 43 H 0.96699 * 113.99863 * 60.00532 * 16 15 14 44 44 H 1.08000 * 119.07508 * 180.38101 * 21 14 13 45 45 H 0.96994 * 120.56533 * 166.65776 * 22 21 14 46 46 H 1.08995 * 109.95193 * 300.94460 * 23 7 6 47 47 H 1.09004 * 110.01722 * 179.71954 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7508 0.0000 4 6 2.5044 -0.9184 -1.5039 5 6 2.3105 -2.4199 -1.2259 6 6 3.0399 -2.7932 0.0617 7 7 2.3059 -2.3572 1.2505 8 7 2.6567 -3.0998 2.3421 9 6 1.7426 -3.8861 2.9442 10 8 0.6085 -3.9340 2.5172 11 6 2.1294 -4.7049 4.1488 12 6 2.8449 -5.9868 3.6990 13 6 3.2335 -6.7898 4.9425 14 6 2.0550 -6.9308 5.8630 15 6 2.0704 -8.0348 6.8887 16 8 3.0441 -7.7391 7.8921 17 14 0.3883 -8.1732 7.6774 18 1 -0.6235 -8.4804 6.6347 19 1 0.4033 -9.2614 8.6877 20 1 0.0440 -6.8885 8.3379 21 6 1.0133 -6.1362 5.8134 22 7 0.9232 -5.1023 4.8898 23 6 2.5044 -0.9156 1.5050 24 1 -0.3633 0.4933 0.9016 25 1 -0.3633 -1.0274 -0.0236 26 1 -0.3634 0.5341 -0.8780 27 1 2.1411 2.2679 0.8899 28 1 3.5896 1.7411 -0.0005 29 1 2.1410 2.2679 -0.8900 30 1 1.9374 -0.6271 -2.3880 31 1 3.5624 -0.7003 -1.6501 32 1 2.7170 -2.9989 -2.0553 33 1 1.2475 -2.6356 -1.1177 34 1 4.0241 -2.3247 0.0606 35 1 3.1625 -3.8757 0.0977 36 1 3.5637 -3.0612 2.6839 37 1 2.7857 -4.1230 4.7958 38 1 2.1757 -6.5801 3.0757 39 1 3.7408 -5.7273 3.1349 40 1 4.0401 -6.2756 5.4652 41 1 3.5741 -7.7795 4.6382 42 1 2.3232 -8.9777 6.4039 43 1 2.8819 -6.9118 8.3658 44 1 0.2022 -6.2900 6.5097 45 1 0.0788 -4.6504 4.7361 46 1 3.5646 -0.7051 1.6445 47 1 1.9456 -0.6127 2.3906 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_15413834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:17:01 Heat of formation + Delta-G solvation = -51.336588 kcal Electronic energy + Delta-G solvation = -24864.387203 eV Core-core repulsion = 21399.824769 eV Total energy + Delta-G solvation = -3464.562434 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.47068 -39.88367 -38.48268 -37.25848 -34.98893 -33.24022 -33.18160 -31.40323 -29.33498 -28.35709 -27.66911 -27.38224 -25.51561 -24.66189 -23.50570 -21.91785 -21.72955 -19.43352 -19.28385 -18.31898 -17.98474 -17.01719 -16.78536 -16.33154 -16.04200 -15.62183 -15.33933 -15.22990 -14.89184 -14.78496 -14.71358 -14.42483 -14.16626 -13.98779 -13.96018 -13.80966 -13.50469 -13.19904 -13.12458 -13.02454 -13.00087 -12.91017 -12.33243 -12.15093 -12.03433 -11.97489 -11.90130 -11.62761 -11.29335 -11.21557 -10.81442 -10.71617 -10.36715 -10.20531 -10.11495 -9.69453 -8.47101 1.27188 1.33594 1.34271 1.43674 1.52539 1.54691 1.81406 1.90199 1.94852 2.10464 2.57487 2.62457 3.29344 3.60301 3.69984 3.79524 3.87248 4.01838 4.02510 4.16346 4.31282 4.42561 4.44194 4.53565 4.62412 4.68047 4.73742 4.77629 4.77808 4.79458 4.80938 4.84267 4.84903 4.91904 5.04366 5.09469 5.25572 5.29725 5.29884 5.46976 5.57332 5.58079 5.65182 5.80893 6.18075 6.21137 6.40153 6.77736 6.88688 7.46258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.095 2.905 3 C -0.455 4.455 4 C -0.415 4.415 5 C -0.104 4.104 6 C 0.026 3.974 7 N -0.301 5.301 8 N -0.572 5.572 9 C 0.527 3.473 10 O -0.555 6.555 11 C 0.144 3.856 12 C -0.122 4.122 13 C -0.050 4.050 14 C -0.282 4.282 15 C -0.052 4.052 16 O -0.559 6.559 17 Si 0.968 3.032 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.252 1.252 21 C 0.125 3.875 22 N -0.739 5.739 23 C -0.269 4.269 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.395 0.605 37 H 0.112 0.888 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.385 0.615 44 H 0.132 0.868 45 H 0.405 0.595 46 H 0.072 0.928 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.104 3.851 -0.982 6.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.283 2.717 3 C -0.564 4.564 4 C -0.501 4.501 5 C -0.142 4.142 6 C -0.102 4.102 7 N -0.118 5.118 8 N -0.317 5.317 9 C 0.313 3.687 10 O -0.430 6.430 11 C 0.034 3.966 12 C -0.161 4.161 13 C -0.087 4.087 14 C -0.293 4.293 15 C -0.164 4.164 16 O -0.366 6.366 17 Si 0.796 3.204 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.176 1.176 21 C 0.004 3.996 22 N -0.371 5.371 23 C -0.441 4.441 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.236 0.764 37 H 0.130 0.870 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.129 0.871 43 H 0.234 0.766 44 H 0.149 0.851 45 H 0.241 0.759 46 H 0.090 0.910 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.358 3.099 -1.191 4.722 hybrid contribution 0.655 0.671 0.266 0.974 sum 4.013 3.770 -0.925 5.583 Atomic orbital electron populations 1.26353 1.23082 1.03668 1.04009 0.78250 0.64886 0.64947 0.63573 1.26162 1.06895 1.18367 1.04927 1.26453 1.07041 1.01776 1.14813 1.21203 1.00853 0.96879 0.95299 1.22588 0.96576 1.01270 0.89737 1.62972 1.53735 1.00585 0.94485 1.45451 1.13388 1.44549 1.28291 1.20845 0.84794 0.78721 0.84319 1.90698 1.21574 1.65288 1.65458 1.21039 0.88717 0.96054 0.90768 1.21862 1.00800 0.94653 0.98764 1.19945 0.95507 1.00432 0.92809 1.21040 1.00383 1.02122 1.05741 1.24616 1.02579 0.99176 0.89998 1.86459 1.52000 1.46358 1.51790 0.85469 0.76025 0.79763 0.79170 1.19190 1.20738 1.17644 1.20548 0.98323 0.88702 0.92032 1.44350 1.11138 1.38629 1.43028 1.28235 1.05768 0.92227 1.17882 0.91936 0.92496 0.91040 0.91110 0.90374 0.90542 0.89876 0.89393 0.90361 0.92086 0.91822 0.90857 0.76401 0.87042 0.92411 0.88280 0.90472 0.90664 0.87115 0.76636 0.85072 0.75854 0.90968 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -0.24 8.65 113.37 0.98 0.74 16 2 Si 1.09 -6.02 11.99 68.60 0.82 -5.19 16 3 C -0.46 2.64 8.65 113.37 0.98 3.62 16 4 C -0.42 2.02 5.04 72.30 0.36 2.38 16 5 C -0.10 0.18 5.74 30.78 0.18 0.36 16 6 C 0.03 -0.05 5.38 86.28 0.46 0.41 16 7 N -0.30 -0.22 4.14 -334.15 -1.38 -1.60 16 8 N -0.57 0.54 4.71 -173.53 -0.82 -0.28 16 9 C 0.53 1.98 7.19 87.66 0.63 2.61 16 10 O -0.55 -7.35 16.40 -3.03 -0.05 -7.40 16 11 C 0.14 -0.13 3.36 44.33 0.15 0.02 16 12 C -0.12 0.25 5.48 30.79 0.17 0.42 16 13 C -0.05 0.08 5.85 29.70 0.17 0.25 16 14 C -0.28 -0.08 5.37 -16.76 -0.09 -0.17 16 15 C -0.05 0.00 2.81 71.24 0.20 0.20 16 16 O -0.56 -0.55 12.88 -148.98 -1.92 -2.47 16 17 Si 0.97 0.46 25.21 68.60 1.73 2.19 16 18 H -0.27 -0.77 7.11 99.48 0.71 -0.06 16 19 H -0.28 -1.27 7.11 99.48 0.71 -0.56 16 20 H -0.25 0.09 6.87 99.48 0.68 0.77 16 21 C 0.12 0.13 9.62 83.41 0.80 0.93 16 22 N -0.74 -1.46 5.47 -328.98 -1.80 -3.26 16 23 C -0.27 0.85 4.86 127.53 0.62 1.47 16 24 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 25 H 0.06 0.27 7.96 -2.39 -0.02 0.25 16 26 H 0.07 -0.05 7.96 -2.38 -0.02 -0.07 16 27 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 28 H 0.08 -0.54 7.96 -2.39 -0.02 -0.56 16 29 H 0.08 -0.43 7.96 -2.38 -0.02 -0.45 16 30 H 0.08 -0.41 7.99 -2.39 -0.02 -0.43 16 31 H 0.09 -0.61 7.99 -2.39 -0.02 -0.63 16 32 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 33 H 0.06 0.12 7.96 -2.39 -0.02 0.10 16 34 H 0.06 -0.37 7.78 -2.39 -0.02 -0.39 16 35 H 0.07 -0.06 8.03 -2.39 -0.02 -0.08 16 36 H 0.40 -2.87 8.83 -215.49 -1.90 -4.77 16 37 H 0.11 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 40 H 0.08 -0.23 8.14 -2.38 -0.02 -0.25 16 41 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 42 H 0.11 -0.06 7.96 -2.39 -0.02 -0.08 16 43 H 0.39 -2.13 8.70 -74.06 -0.64 -2.77 16 44 H 0.13 -0.10 4.33 -2.91 -0.01 -0.11 16 45 H 0.41 1.39 8.10 -92.71 -0.75 0.64 16 46 H 0.07 -0.49 7.92 -2.39 -0.02 -0.51 16 47 H 0.08 -0.10 7.99 -2.38 -0.02 -0.12 16 Total: 0.00 -17.32 370.09 0.61 -16.71 By element: Atomic # 1 Polarization: -10.34 SS G_CDS: -1.60 Total: -11.94 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 5.62 Total: 13.24 kcal Atomic # 7 Polarization: -1.14 SS G_CDS: -4.00 Total: -5.14 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -1.97 Total: -9.87 kcal Atomic # 14 Polarization: -5.56 SS G_CDS: 2.55 Total: -3.00 kcal Total: -17.32 0.61 -16.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_15413834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.624 kcal (2) G-P(sol) polarization free energy of solvation -17.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds