Wall clock time and date at job start Sun Mar 7 2021 09:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86302 * 109.98340 * 2 1 4 4 C 1.87517 * 110.00304 * 238.58342 * 2 1 3 5 5 C 1.53932 * 106.85280 * 284.49850 * 4 2 1 6 6 C 1.52631 * 109.30745 * 302.79846 * 5 4 2 7 7 N 1.46349 * 111.89203 * 76.51865 * 6 5 4 8 8 N 1.36606 * 111.00040 * 156.80169 * 7 6 5 9 9 C 1.34775 * 119.99883 * 249.38197 * 8 7 6 10 10 O 1.21280 * 120.00477 * 4.65422 * 9 8 7 11 11 C 1.50698 * 119.99800 * 184.65355 * 9 8 7 12 12 C 1.53044 * 109.33116 * 216.29812 * 11 9 8 13 13 C 1.53496 * 108.58791 * 189.99774 * 12 11 9 14 14 N 1.47026 * 107.50377 * 61.21097 * 13 12 11 15 15 C 1.38920 * 118.88558 * 316.25253 * 14 13 12 16 16 C 1.31110 * 121.85131 * 13.29767 * 15 14 13 17 17 C 1.50702 * 118.55010 * 179.61637 * 16 15 14 18 18 O 1.42904 * 109.46922 * 111.49379 * 17 16 15 19 19 Si 1.86299 * 109.47110 * 351.49269 * 17 16 15 20 20 H 1.48499 * 109.47085 * 180.02562 * 19 17 16 21 21 H 1.48496 * 109.47277 * 300.00106 * 19 17 16 22 22 H 1.48505 * 109.46953 * 60.00290 * 19 17 16 23 23 C 1.47718 * 111.30976 * 280.97823 * 7 6 5 24 24 H 1.09005 * 109.47656 * 298.69042 * 1 2 3 25 25 H 1.08997 * 109.47141 * 178.68549 * 1 2 3 26 26 H 1.09002 * 109.47194 * 58.68563 * 1 2 3 27 27 H 1.09001 * 109.47143 * 59.99622 * 3 2 1 28 28 H 1.08997 * 109.47016 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.47093 * 299.99520 * 3 2 1 30 30 H 1.09008 * 109.97853 * 43.83440 * 4 2 1 31 31 H 1.09006 * 109.97610 * 165.16093 * 4 2 1 32 32 H 1.08995 * 109.50128 * 182.84941 * 5 4 2 33 33 H 1.08998 * 109.49550 * 62.74338 * 5 4 2 34 34 H 1.09000 * 108.99751 * 315.89546 * 6 5 4 35 35 H 1.09002 * 108.99417 * 197.14113 * 6 5 4 36 36 H 0.96997 * 119.99828 * 69.37433 * 8 7 6 37 37 H 1.09003 * 109.33157 * 335.94947 * 11 9 8 38 38 H 1.09008 * 109.61809 * 309.89104 * 12 11 9 39 39 H 1.09001 * 109.62300 * 70.44526 * 12 11 9 40 40 H 1.09003 * 109.96362 * 301.68131 * 13 12 11 41 41 H 1.08996 * 109.82704 * 180.66376 * 13 12 11 42 42 H 0.97003 * 120.55765 * 136.27608 * 14 13 12 43 43 H 1.08006 * 119.07597 * 193.31418 * 15 14 13 44 44 H 1.09000 * 109.46983 * 231.49373 * 17 16 15 45 45 H 0.96706 * 113.99666 * 179.97438 * 18 17 16 46 46 H 1.08997 * 109.94965 * 300.94254 * 23 7 6 47 47 H 1.09001 * 110.02337 * 179.72217 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7509 0.0000 4 6 2.5044 -0.9185 -1.5037 5 6 2.3105 -2.4200 -1.2258 6 6 3.0398 -2.7932 0.0620 7 7 2.3059 -2.3571 1.2507 8 7 2.6566 -3.0996 2.3424 9 6 1.7731 -3.9619 2.8830 10 8 0.6978 -4.1412 2.3515 11 6 2.1212 -4.7033 4.1479 12 6 1.5373 -6.1165 4.0839 13 6 1.6802 -6.7680 5.4664 14 7 0.9130 -5.9537 6.4204 15 6 1.0153 -4.5698 6.3557 16 6 1.5595 -3.9635 5.3284 17 6 1.6240 -2.4579 5.3319 18 8 2.9849 -2.0397 5.4556 19 14 0.6383 -1.7975 6.7682 20 1 0.7013 -0.3138 6.7713 21 1 -0.7758 -2.2321 6.6397 22 1 1.2033 -2.3200 8.0383 23 6 2.5042 -0.9155 1.5052 24 1 -0.3634 0.4934 0.9015 25 1 -0.3633 -1.0274 -0.0236 26 1 -0.3634 0.5341 -0.8780 27 1 2.1409 2.2679 0.8900 28 1 3.5896 1.7411 0.0005 29 1 2.1410 2.2679 -0.8901 30 1 1.9374 -0.6272 -2.3880 31 1 3.5624 -0.7004 -1.6500 32 1 2.7171 -2.9990 -2.0550 33 1 1.2476 -2.6356 -1.1175 34 1 4.0240 -2.3248 0.0609 35 1 3.1637 -3.8755 0.0987 36 1 3.5416 -3.0064 2.7284 37 1 3.2053 -4.7649 4.2433 38 1 0.4839 -6.0651 3.8080 39 1 2.0833 -6.7051 3.3467 40 1 2.7296 -6.7911 5.7603 41 1 1.2804 -7.7817 5.4405 42 1 0.3453 -6.3758 7.0841 43 1 0.6362 -3.9766 7.1748 44 1 1.2093 -2.0744 4.3997 45 1 3.1021 -1.0798 5.4644 46 1 3.5645 -0.7049 1.6446 47 1 1.9455 -0.6125 2.3907 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_15608500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:17:13 Heat of formation + Delta-G solvation = -51.857046 kcal Electronic energy + Delta-G solvation = -25987.916050 eV Core-core repulsion = 22523.331047 eV Total energy + Delta-G solvation = -3464.585003 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.28976 -39.66408 -38.00532 -37.46973 -34.75473 -33.48388 -32.84792 -31.29421 -29.39677 -28.39696 -27.55973 -27.20436 -26.02415 -24.31108 -23.09055 -21.89864 -21.41467 -19.21207 -18.75533 -18.39594 -18.10441 -17.66979 -16.87657 -16.32094 -15.63301 -15.38358 -15.09351 -15.00872 -14.84945 -14.61629 -14.45242 -14.22860 -14.12253 -14.05220 -13.84012 -13.80584 -13.56273 -13.54197 -13.25407 -13.12964 -12.95412 -12.78282 -12.23317 -12.08030 -12.01078 -11.97271 -11.66266 -11.54642 -11.38153 -11.14580 -10.85436 -10.46012 -10.26708 -10.14189 -9.99548 -9.50778 -8.42896 1.21640 1.26669 1.44138 1.49996 1.54869 1.79443 1.84296 1.92702 2.02401 2.22985 2.56641 2.58299 3.53045 3.56126 3.72650 3.88090 3.99772 4.05058 4.18828 4.23523 4.35559 4.41059 4.45878 4.57219 4.59024 4.61974 4.66736 4.67346 4.68019 4.74782 4.79133 4.82867 4.84640 4.89988 4.94723 5.09649 5.23396 5.28732 5.35638 5.41271 5.43816 5.48456 5.69555 5.88121 6.31889 6.54830 6.65905 6.68971 6.84067 7.83159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 1.028 2.972 3 C -0.450 4.450 4 C -0.410 4.410 5 C -0.100 4.100 6 C 0.026 3.974 7 N -0.277 5.277 8 N -0.584 5.584 9 C 0.543 3.457 10 O -0.516 6.516 11 C -0.031 4.031 12 C -0.128 4.128 13 C 0.123 3.877 14 N -0.748 5.748 15 C 0.146 3.854 16 C -0.226 4.226 17 C -0.062 4.062 18 O -0.547 6.547 19 Si 0.936 3.064 20 H -0.258 1.258 21 H -0.250 1.250 22 H -0.250 1.250 23 C -0.256 4.256 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.381 0.619 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.403 0.597 43 H 0.126 0.874 44 H 0.067 0.933 45 H 0.372 0.628 46 H 0.054 0.946 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.607 0.734 0.981 2.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.552 4.552 2 Si 1.221 2.779 3 C -0.558 4.558 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.102 4.102 7 N -0.093 5.093 8 N -0.329 5.329 9 C 0.329 3.671 10 O -0.389 6.389 11 C -0.053 4.053 12 C -0.166 4.166 13 C -0.002 4.002 14 N -0.378 5.378 15 C 0.024 3.976 16 C -0.237 4.237 17 C -0.173 4.173 18 O -0.352 6.352 19 Si 0.760 3.240 20 H -0.182 1.182 21 H -0.174 1.174 22 H -0.174 1.174 23 C -0.430 4.430 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.220 0.780 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.237 0.763 43 H 0.143 0.857 44 H 0.085 0.915 45 H 0.218 0.782 46 H 0.072 0.928 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.045 0.080 1.181 1.579 hybrid contribution 1.457 0.620 0.267 1.606 sum 2.502 0.701 1.449 2.975 Atomic orbital electron populations 1.26031 1.19900 1.05171 1.04070 0.79248 0.67954 0.65521 0.65132 1.26119 1.06305 1.18615 1.04769 1.26378 1.06014 1.02876 1.14324 1.21178 1.01949 0.95604 0.95147 1.22570 0.95744 1.01373 0.90500 1.62971 1.52320 0.99577 0.94387 1.45748 1.16553 1.42369 1.28206 1.20379 0.83942 0.78311 0.84451 1.90674 1.22878 1.63384 1.61931 1.19581 1.01027 0.94257 0.90470 1.21841 1.03588 0.93953 0.97250 1.21606 0.96131 0.94281 0.88190 1.44492 1.51813 1.03061 1.38463 1.20298 0.96709 0.84961 0.95600 1.19378 1.15046 0.92745 0.96550 1.24527 0.89276 0.95484 1.08023 1.86502 1.24894 1.26879 1.96937 0.85932 0.79597 0.79940 0.78547 1.18240 1.17351 1.17441 1.28001 1.04554 0.93404 1.17005 0.91403 0.90327 0.91405 0.91079 0.91219 0.90767 0.90219 0.90770 0.91053 0.90284 0.93993 0.90409 0.78019 0.89374 0.89409 0.90438 0.91931 0.89846 0.76255 0.85683 0.91514 0.78175 0.92794 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.00 8.65 101.05 0.87 0.87 16 2 Si 1.03 -2.02 11.99 -169.99 -2.04 -4.06 16 3 C -0.45 0.84 8.65 101.05 0.87 1.71 16 4 C -0.41 0.50 5.04 37.64 0.19 0.69 16 5 C -0.10 -0.01 5.74 -26.43 -0.15 -0.16 16 6 C 0.03 0.01 5.38 -4.31 -0.02 -0.01 16 7 N -0.28 -0.42 4.15 -56.97 -0.24 -0.65 16 8 N -0.58 -0.90 4.70 31.22 0.15 -0.76 16 9 C 0.54 1.93 5.40 -10.99 -0.06 1.87 16 10 O -0.52 -3.86 16.42 5.56 0.09 -3.77 16 11 C -0.03 -0.05 2.71 -93.14 -0.25 -0.30 16 12 C -0.13 -0.10 5.30 -26.45 -0.14 -0.24 16 13 C 0.12 -0.12 7.16 -3.50 -0.03 -0.14 16 14 N -0.75 0.23 5.83 -60.71 -0.35 -0.12 16 15 C 0.15 0.17 9.62 -16.08 -0.15 0.02 16 16 C -0.23 -0.43 5.07 -101.33 -0.51 -0.94 16 17 C -0.06 -0.05 2.37 36.01 0.09 0.03 16 18 O -0.55 0.07 12.85 -35.23 -0.45 -0.38 16 19 Si 0.94 0.42 25.16 -169.99 -4.28 -3.86 16 20 H -0.26 -0.16 7.11 56.52 0.40 0.25 16 21 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 22 H -0.25 -0.25 6.91 56.52 0.39 0.14 16 23 C -0.26 0.16 4.85 60.51 0.29 0.45 16 24 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 25 H 0.08 0.13 7.96 -51.93 -0.41 -0.29 16 26 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.08 -0.11 7.99 -51.92 -0.42 -0.53 16 31 H 0.07 -0.12 7.99 -51.93 -0.42 -0.54 16 32 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.08 0.09 7.96 -51.93 -0.41 -0.32 16 34 H 0.04 -0.02 7.78 -51.93 -0.40 -0.43 16 35 H 0.08 0.10 8.03 -51.93 -0.42 -0.32 16 36 H 0.38 -0.05 8.77 -185.15 -1.62 -1.68 16 37 H 0.09 0.05 8.07 -51.93 -0.42 -0.37 16 38 H 0.09 0.27 7.51 -51.92 -0.39 -0.12 16 39 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 40 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 41 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 42 H 0.40 -0.94 8.96 -40.82 -0.37 -1.30 16 43 H 0.13 0.02 4.33 -52.48 -0.23 -0.21 16 44 H 0.07 0.10 6.91 -51.93 -0.36 -0.26 16 45 H 0.37 -1.39 8.74 45.56 0.40 -0.99 16 46 H 0.05 -0.09 7.92 -51.93 -0.41 -0.50 16 47 H 0.09 -0.05 7.99 -51.93 -0.41 -0.46 16 LS Contribution 367.48 15.07 5.54 5.54 Total: 0.00 -7.21 367.48 -9.44 -16.65 By element: Atomic # 1 Polarization: -3.58 SS G_CDS: -8.86 Total: -12.44 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 1.00 Total: 3.84 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -0.44 Total: -1.53 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.36 Total: -4.15 kcal Atomic # 14 Polarization: -1.60 SS G_CDS: -6.31 Total: -7.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -7.21 -9.44 -16.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_15608500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.205 kcal (2) G-P(sol) polarization free energy of solvation -7.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds