Wall clock time and date at job start Sun Mar 7 2021 09:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86302 * 109.98340 * 2 1 4 4 C 1.87517 * 110.00304 * 238.58342 * 2 1 3 5 5 C 1.53932 * 106.85280 * 284.49850 * 4 2 1 6 6 C 1.52631 * 109.30745 * 302.79846 * 5 4 2 7 7 N 1.46349 * 111.89203 * 76.51865 * 6 5 4 8 8 N 1.36606 * 111.00040 * 156.80169 * 7 6 5 9 9 C 1.34775 * 119.99883 * 249.38197 * 8 7 6 10 10 O 1.21280 * 120.00477 * 4.65422 * 9 8 7 11 11 C 1.50698 * 119.99800 * 184.65355 * 9 8 7 12 12 C 1.53044 * 109.33116 * 216.29812 * 11 9 8 13 13 C 1.53496 * 108.58791 * 189.99774 * 12 11 9 14 14 N 1.47026 * 107.50377 * 61.21097 * 13 12 11 15 15 C 1.38920 * 118.88558 * 316.25253 * 14 13 12 16 16 C 1.31110 * 121.85131 * 13.29767 * 15 14 13 17 17 C 1.50702 * 118.55010 * 179.61637 * 16 15 14 18 18 O 1.42904 * 109.46922 * 111.49379 * 17 16 15 19 19 Si 1.86299 * 109.47110 * 351.49269 * 17 16 15 20 20 H 1.48499 * 109.47085 * 180.02562 * 19 17 16 21 21 H 1.48496 * 109.47277 * 300.00106 * 19 17 16 22 22 H 1.48505 * 109.46953 * 60.00290 * 19 17 16 23 23 C 1.47718 * 111.30976 * 280.97823 * 7 6 5 24 24 H 1.09005 * 109.47656 * 298.69042 * 1 2 3 25 25 H 1.08997 * 109.47141 * 178.68549 * 1 2 3 26 26 H 1.09002 * 109.47194 * 58.68563 * 1 2 3 27 27 H 1.09001 * 109.47143 * 59.99622 * 3 2 1 28 28 H 1.08997 * 109.47016 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.47093 * 299.99520 * 3 2 1 30 30 H 1.09008 * 109.97853 * 43.83440 * 4 2 1 31 31 H 1.09006 * 109.97610 * 165.16093 * 4 2 1 32 32 H 1.08995 * 109.50128 * 182.84941 * 5 4 2 33 33 H 1.08998 * 109.49550 * 62.74338 * 5 4 2 34 34 H 1.09000 * 108.99751 * 315.89546 * 6 5 4 35 35 H 1.09002 * 108.99417 * 197.14113 * 6 5 4 36 36 H 0.96997 * 119.99828 * 69.37433 * 8 7 6 37 37 H 1.09003 * 109.33157 * 335.94947 * 11 9 8 38 38 H 1.09008 * 109.61809 * 309.89104 * 12 11 9 39 39 H 1.09001 * 109.62300 * 70.44526 * 12 11 9 40 40 H 1.09003 * 109.96362 * 301.68131 * 13 12 11 41 41 H 1.08996 * 109.82704 * 180.66376 * 13 12 11 42 42 H 0.97003 * 120.55765 * 136.27608 * 14 13 12 43 43 H 1.08006 * 119.07597 * 193.31418 * 15 14 13 44 44 H 1.09000 * 109.46983 * 231.49373 * 17 16 15 45 45 H 0.96706 * 113.99666 * 179.97438 * 18 17 16 46 46 H 1.08997 * 109.94965 * 300.94254 * 23 7 6 47 47 H 1.09001 * 110.02337 * 179.72217 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7509 0.0000 4 6 2.5044 -0.9185 -1.5037 5 6 2.3105 -2.4200 -1.2258 6 6 3.0398 -2.7932 0.0620 7 7 2.3059 -2.3571 1.2507 8 7 2.6566 -3.0996 2.3424 9 6 1.7731 -3.9619 2.8830 10 8 0.6978 -4.1412 2.3515 11 6 2.1212 -4.7033 4.1479 12 6 1.5373 -6.1165 4.0839 13 6 1.6802 -6.7680 5.4664 14 7 0.9130 -5.9537 6.4204 15 6 1.0153 -4.5698 6.3557 16 6 1.5595 -3.9635 5.3284 17 6 1.6240 -2.4579 5.3319 18 8 2.9849 -2.0397 5.4556 19 14 0.6383 -1.7975 6.7682 20 1 0.7013 -0.3138 6.7713 21 1 -0.7758 -2.2321 6.6397 22 1 1.2033 -2.3200 8.0383 23 6 2.5042 -0.9155 1.5052 24 1 -0.3634 0.4934 0.9015 25 1 -0.3633 -1.0274 -0.0236 26 1 -0.3634 0.5341 -0.8780 27 1 2.1409 2.2679 0.8900 28 1 3.5896 1.7411 0.0005 29 1 2.1410 2.2679 -0.8901 30 1 1.9374 -0.6272 -2.3880 31 1 3.5624 -0.7004 -1.6500 32 1 2.7171 -2.9990 -2.0550 33 1 1.2476 -2.6356 -1.1175 34 1 4.0240 -2.3248 0.0609 35 1 3.1637 -3.8755 0.0987 36 1 3.5416 -3.0064 2.7284 37 1 3.2053 -4.7649 4.2433 38 1 0.4839 -6.0651 3.8080 39 1 2.0833 -6.7051 3.3467 40 1 2.7296 -6.7911 5.7603 41 1 1.2804 -7.7817 5.4405 42 1 0.3453 -6.3758 7.0841 43 1 0.6362 -3.9766 7.1748 44 1 1.2093 -2.0744 4.3997 45 1 3.1021 -1.0798 5.4644 46 1 3.5645 -0.7049 1.6446 47 1 1.9455 -0.6125 2.3907 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_15608500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:17:12 Heat of formation + Delta-G solvation = -49.509878 kcal Electronic energy + Delta-G solvation = -25987.814269 eV Core-core repulsion = 22523.331047 eV Total energy + Delta-G solvation = -3464.483222 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44492 -39.71820 -38.19239 -37.45726 -34.85089 -33.55771 -32.87941 -31.36031 -29.30865 -28.33327 -27.52723 -27.23475 -26.07114 -24.32691 -23.12225 -21.93446 -21.59101 -19.29198 -18.78644 -18.41648 -18.17207 -17.81967 -16.95493 -16.35318 -15.73704 -15.49644 -15.09309 -15.02928 -14.84258 -14.63163 -14.53998 -14.25612 -14.17567 -13.95311 -13.87972 -13.78896 -13.63473 -13.46671 -13.17185 -13.09432 -12.94232 -12.82292 -12.28926 -12.17722 -12.00991 -11.95699 -11.72603 -11.60446 -11.42785 -11.16877 -10.78899 -10.55804 -10.31361 -10.18682 -10.10486 -9.55409 -8.45453 1.16475 1.20102 1.38900 1.46140 1.57324 1.77538 1.85673 1.90542 1.93349 2.25320 2.63052 2.64439 3.48414 3.58261 3.67932 3.84932 3.98267 4.05136 4.15887 4.23295 4.30030 4.39805 4.47269 4.55062 4.55984 4.64979 4.70231 4.77017 4.78369 4.81975 4.82922 4.84448 4.86816 4.87506 4.96775 5.10822 5.18516 5.27479 5.30615 5.44287 5.48273 5.60344 5.67474 5.88312 6.29532 6.38857 6.53987 6.85569 6.93420 7.66755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.089 2.911 3 C -0.452 4.452 4 C -0.416 4.416 5 C -0.102 4.102 6 C 0.027 3.973 7 N -0.300 5.300 8 N -0.574 5.574 9 C 0.543 3.457 10 O -0.565 6.565 11 C -0.028 4.028 12 C -0.127 4.127 13 C 0.124 3.876 14 N -0.747 5.747 15 C 0.142 3.858 16 C -0.250 4.250 17 C -0.058 4.058 18 O -0.553 6.553 19 Si 0.966 3.034 20 H -0.258 1.258 21 H -0.270 1.270 22 H -0.254 1.254 23 C -0.268 4.268 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.391 0.609 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.413 0.587 43 H 0.133 0.867 44 H 0.055 0.945 45 H 0.388 0.612 46 H 0.070 0.930 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.125 1.343 1.358 4.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.278 2.722 3 C -0.561 4.561 4 C -0.501 4.501 5 C -0.141 4.141 6 C -0.101 4.101 7 N -0.116 5.116 8 N -0.318 5.318 9 C 0.330 3.670 10 O -0.441 6.441 11 C -0.051 4.051 12 C -0.165 4.165 13 C 0.000 4.000 14 N -0.378 5.378 15 C 0.019 3.981 16 C -0.261 4.261 17 C -0.169 4.169 18 O -0.360 6.360 19 Si 0.791 3.209 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.179 1.179 23 C -0.440 4.440 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.231 0.769 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.249 0.751 43 H 0.150 0.850 44 H 0.073 0.927 45 H 0.236 0.764 46 H 0.088 0.912 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.584 0.691 1.572 3.103 hybrid contribution 0.956 0.432 0.139 1.058 sum 3.540 1.123 1.711 4.089 Atomic orbital electron populations 1.26330 1.22846 1.03690 1.04146 0.78340 0.65113 0.65102 0.63619 1.26124 1.06839 1.18077 1.05026 1.26470 1.06931 1.01741 1.14983 1.21182 1.00808 0.96907 0.95176 1.22560 0.96455 1.00799 0.90267 1.62985 1.53342 1.00683 0.94606 1.45666 1.16565 1.41603 1.27969 1.20768 0.83380 0.78152 0.84667 1.90646 1.24899 1.65132 1.63437 1.19606 1.01657 0.94358 0.89435 1.21816 1.01937 0.94011 0.98774 1.21685 0.96697 0.94829 0.86783 1.44596 1.51835 1.02690 1.38685 1.20476 0.96125 0.85789 0.95674 1.19570 1.16171 0.93447 0.96914 1.24458 0.89800 0.95102 1.07584 1.86462 1.24180 1.28522 1.96851 0.85507 0.77984 0.79546 0.77856 1.18206 1.19492 1.17853 1.28222 1.05707 0.92142 1.17881 0.91659 0.92551 0.91006 0.90853 0.90427 0.90546 0.89886 0.89580 0.90641 0.92079 0.92355 0.91633 0.76916 0.88229 0.92046 0.89592 0.91115 0.87894 0.75143 0.85048 0.92744 0.76369 0.91194 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 -0.66 8.65 113.37 0.98 0.32 16 2 Si 1.09 -4.45 11.99 68.60 0.82 -3.63 16 3 C -0.45 2.31 8.65 113.37 0.98 3.29 16 4 C -0.42 1.20 5.04 72.30 0.36 1.57 16 5 C -0.10 -0.09 5.74 30.79 0.18 0.09 16 6 C 0.03 0.04 5.38 86.29 0.46 0.51 16 7 N -0.30 -1.18 4.15 -334.15 -1.39 -2.57 16 8 N -0.57 -2.31 4.70 -173.54 -0.82 -3.12 16 9 C 0.54 4.76 5.40 87.66 0.47 5.24 16 10 O -0.56 -10.01 16.42 -3.03 -0.05 -10.06 16 11 C -0.03 -0.12 2.71 -12.43 -0.03 -0.15 16 12 C -0.13 -0.33 5.30 30.78 0.16 -0.17 16 13 C 0.12 -0.28 7.16 86.45 0.62 0.34 16 14 N -0.75 0.48 5.83 -345.98 -2.02 -1.53 16 15 C 0.14 0.40 9.62 83.42 0.80 1.20 16 16 C -0.25 -1.14 5.07 -16.75 -0.08 -1.22 16 17 C -0.06 -0.14 2.37 71.24 0.17 0.03 16 18 O -0.55 0.28 12.85 -148.98 -1.91 -1.64 16 19 Si 0.97 1.29 25.16 68.60 1.73 3.01 16 20 H -0.26 -0.27 7.11 99.48 0.71 0.44 16 21 H -0.27 -1.19 7.11 99.48 0.71 -0.49 16 22 H -0.25 -0.47 6.91 99.48 0.69 0.22 16 23 C -0.27 0.35 4.85 127.53 0.62 0.97 16 24 H 0.06 0.10 7.96 -2.38 -0.02 0.08 16 25 H 0.06 0.33 7.96 -2.39 -0.02 0.32 16 26 H 0.07 0.01 7.96 -2.39 -0.02 -0.01 16 27 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 28 H 0.08 -0.47 7.96 -2.39 -0.02 -0.49 16 29 H 0.08 -0.38 7.96 -2.38 -0.02 -0.40 16 30 H 0.08 -0.27 7.99 -2.38 -0.02 -0.29 16 31 H 0.09 -0.42 7.99 -2.38 -0.02 -0.44 16 32 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.06 0.27 7.96 -2.39 -0.02 0.25 16 34 H 0.06 -0.12 7.78 -2.39 -0.02 -0.13 16 35 H 0.07 0.24 8.03 -2.39 -0.02 0.23 16 36 H 0.39 -0.04 8.77 -215.50 -1.89 -1.93 16 37 H 0.10 0.12 8.07 -2.39 -0.02 0.11 16 38 H 0.06 0.51 7.51 -2.38 -0.02 0.49 16 39 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 42 H 0.41 -2.02 8.96 -92.71 -0.83 -2.85 16 43 H 0.13 0.09 4.33 -2.91 -0.01 0.08 16 44 H 0.05 0.25 6.91 -2.39 -0.02 0.23 16 45 H 0.39 -3.12 8.74 -74.05 -0.65 -3.76 16 46 H 0.07 -0.32 7.92 -2.39 -0.02 -0.34 16 47 H 0.09 -0.05 7.99 -2.39 -0.02 -0.07 16 Total: 0.00 -18.05 367.48 0.40 -17.64 By element: Atomic # 1 Polarization: -8.44 SS G_CDS: -1.66 Total: -10.10 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 5.69 Total: 12.00 kcal Atomic # 7 Polarization: -3.00 SS G_CDS: -4.22 Total: -7.22 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.96 Total: -11.70 kcal Atomic # 14 Polarization: -3.17 SS G_CDS: 2.55 Total: -0.62 kcal Total: -18.05 0.40 -17.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_15608500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.867 kcal (2) G-P(sol) polarization free energy of solvation -18.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds