Wall clock time and date at job start Sun Mar 7 2021 09:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86303 * 109.98581 * 2 1 4 4 C 1.87527 * 110.00284 * 121.31339 * 2 1 3 5 5 C 1.53924 * 106.85293 * 163.09716 * 4 2 1 6 6 C 1.52629 * 109.31216 * 302.79740 * 5 4 2 7 7 N 1.46363 * 111.88923 * 76.51580 * 6 5 4 8 8 N 1.36601 * 110.99271 * 156.80736 * 7 6 5 9 9 C 1.34778 * 119.99690 * 235.43347 * 8 7 6 10 10 O 1.21629 * 119.99943 * 354.99138 * 9 8 7 11 11 C 1.47261 * 120.00198 * 174.99592 * 9 8 7 12 12 C 1.36333 * 126.97119 * 179.70950 * 11 9 8 13 13 C 1.51000 * 126.79251 * 0.67212 * 12 11 9 14 14 C 1.53390 * 108.30588 * 163.90619 * 13 12 11 15 15 C 1.53157 * 109.04239 * 48.27332 * 14 13 12 16 16 C 1.53125 * 109.52772 * 290.42412 * 15 14 13 17 17 N 1.35220 * 108.66293 * 179.89368 * 12 11 9 18 18 C 1.36430 * 109.89274 * 0.38003 * 17 12 11 19 19 C 1.50703 * 125.48702 * 179.78667 * 18 17 12 20 20 O 1.42897 * 109.47699 * 330.00292 * 19 18 17 21 21 Si 1.86301 * 109.46864 * 210.00060 * 19 18 17 22 22 H 1.48493 * 109.47314 * 60.00256 * 21 19 18 23 23 H 1.48499 * 109.47184 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47317 * 300.00168 * 21 19 18 25 25 C 1.34493 * 109.01441 * 359.76987 * 18 17 12 26 26 C 1.47724 * 111.30812 * 280.97928 * 7 6 5 27 27 H 1.09009 * 109.46621 * 298.68900 * 1 2 3 28 28 H 1.08997 * 109.47242 * 58.68291 * 1 2 3 29 29 H 1.08998 * 109.47247 * 178.69291 * 1 2 3 30 30 H 1.08999 * 109.46964 * 181.31343 * 3 2 1 31 31 H 1.08995 * 109.46910 * 301.30991 * 3 2 1 32 32 H 1.08998 * 109.47060 * 61.31341 * 3 2 1 33 33 H 1.09001 * 109.97477 * 43.75989 * 4 2 1 34 34 H 1.09002 * 110.05188 * 282.47432 * 4 2 1 35 35 H 1.09000 * 109.50411 * 182.84491 * 5 4 2 36 36 H 1.08997 * 109.50158 * 62.74350 * 5 4 2 37 37 H 1.09002 * 108.99260 * 315.90353 * 6 5 4 38 38 H 1.08991 * 108.93524 * 197.09881 * 6 5 4 39 39 H 0.96999 * 120.00427 * 55.43891 * 8 7 6 40 40 H 1.08999 * 109.85329 * 44.09278 * 13 12 11 41 41 H 1.09005 * 109.49908 * 283.51468 * 13 12 11 42 42 H 1.08996 * 109.54291 * 288.40148 * 14 13 12 43 43 H 1.09004 * 109.53877 * 168.14273 * 14 13 12 44 44 H 1.09001 * 109.46002 * 170.40659 * 15 14 13 45 45 H 1.08996 * 109.46353 * 50.44694 * 15 14 13 46 46 H 1.09004 * 109.56894 * 291.14714 * 16 15 14 47 47 H 1.09005 * 109.65444 * 170.86494 * 16 15 14 48 48 H 1.09007 * 109.46716 * 90.00820 * 19 18 17 49 49 H 0.96697 * 113.99991 * 300.00454 * 20 19 18 50 50 H 1.08007 * 126.81260 * 179.97438 * 25 18 17 51 51 H 1.09001 * 109.94318 * 179.68160 * 26 7 6 52 52 H 1.08994 * 109.94823 * 300.94233 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4998 1.7508 0.0000 4 6 2.5045 -0.9158 1.5055 5 6 3.9816 -1.2491 1.2292 6 6 4.0831 -2.0638 -0.0575 7 7 3.9262 -1.2262 -1.2475 8 7 4.5043 -1.8118 -2.3378 9 6 5.4349 -1.1434 -3.0475 10 8 5.6944 0.0128 -2.7733 11 6 6.1376 -1.8129 -4.1550 12 6 7.0933 -1.2744 -4.9645 13 6 7.6533 0.1262 -4.8947 14 6 8.9556 0.1654 -5.7042 15 6 8.7156 -0.4878 -7.0686 16 6 8.5104 -1.9942 -6.8859 17 7 7.4875 -2.2142 -5.8532 18 6 6.7938 -3.3703 -5.6445 19 6 6.9519 -4.6410 -6.4393 20 8 7.3413 -4.3213 -7.7765 21 14 5.3323 -5.5613 -6.4674 22 1 4.2903 -4.7106 -7.0963 23 1 5.4882 -6.8137 -7.2499 24 1 4.9276 -5.8936 -5.0778 25 6 5.9465 -3.1933 -4.6152 26 6 2.5042 -0.9183 -1.5035 27 1 -0.3633 0.4934 0.9016 28 1 -0.3633 0.5341 -0.8779 29 1 -0.3633 -1.0274 -0.0234 30 1 3.5895 1.7411 -0.0236 31 1 2.1221 2.2748 -0.8780 32 1 2.1604 2.2609 0.9015 33 1 1.9366 -1.8345 1.6524 34 1 2.4245 -0.2835 2.3897 35 1 4.3854 -1.8286 2.0594 36 1 4.5489 -0.3248 1.1202 37 1 3.3054 -2.8275 -0.0561 38 1 5.0578 -2.5503 -0.0921 39 1 4.2450 -2.7085 -2.6014 40 1 7.8570 0.3921 -3.8574 41 1 6.9347 0.8270 -5.3199 42 1 9.7333 -0.3806 -5.1703 43 1 9.2663 1.2006 -5.8451 44 1 9.5787 -0.3141 -7.7112 45 1 7.8278 -0.0533 -7.5281 46 1 9.4479 -2.4553 -6.5751 47 1 8.1806 -2.4360 -7.8263 48 1 7.7167 -5.2655 -5.9775 49 1 6.7060 -3.7663 -8.2491 50 1 5.2613 -3.9222 -4.2083 51 1 2.4136 -0.2901 -2.3896 52 1 1.9429 -1.8422 -1.6423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_16915396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:17:24 Heat of formation + Delta-G solvation = -36.343493 kcal Electronic energy + Delta-G solvation = -30284.452702 eV Core-core repulsion = 26408.550518 eV Total energy + Delta-G solvation = -3875.902185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.73496 -40.41834 -38.25959 -37.92397 -36.88424 -34.71143 -33.41526 -31.62962 -31.12752 -29.37388 -29.21247 -28.34160 -27.50990 -26.58870 -25.05706 -24.66961 -23.26015 -21.85021 -21.70823 -20.93010 -19.62541 -18.95722 -18.01434 -17.39865 -16.79901 -16.62855 -16.45213 -16.18121 -15.62908 -15.41236 -15.27378 -15.16373 -14.86808 -14.77552 -14.68477 -14.57807 -14.43717 -14.14500 -14.03620 -13.91495 -13.77662 -13.49412 -13.28176 -13.20296 -13.07707 -12.92908 -12.78456 -12.42378 -12.19419 -12.09207 -12.01945 -12.00058 -11.95852 -11.79751 -11.76822 -11.13379 -10.79778 -10.75978 -10.46988 -10.28283 -9.87543 -9.57840 -9.50449 -8.97130 0.86494 0.96294 1.30928 1.41530 1.46106 1.50999 1.75810 1.84391 1.88811 1.97856 2.31693 2.61862 2.85198 3.13535 3.45272 3.52429 3.62264 3.68256 3.78959 3.81496 4.03654 4.13690 4.25432 4.29141 4.38513 4.41055 4.44207 4.49375 4.57122 4.58384 4.67725 4.70232 4.71401 4.71577 4.76626 4.79868 4.83756 4.89564 4.91551 4.97029 5.01521 5.07040 5.10485 5.19835 5.23268 5.29422 5.43070 5.47210 5.75711 5.77508 5.91475 6.06477 6.25616 6.30090 6.58708 6.79139 7.91151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.029 2.971 3 C -0.442 4.442 4 C -0.409 4.409 5 C -0.100 4.100 6 C 0.026 3.974 7 N -0.274 5.274 8 N -0.585 5.585 9 C 0.609 3.391 10 O -0.524 6.524 11 C -0.230 4.230 12 C 0.123 3.877 13 C -0.056 4.056 14 C -0.129 4.129 15 C -0.139 4.139 16 C 0.099 3.901 17 N -0.425 5.425 18 C -0.012 4.012 19 C -0.057 4.057 20 O -0.541 6.541 21 Si 0.972 3.028 22 H -0.250 1.250 23 H -0.251 1.251 24 H -0.248 1.248 25 C -0.174 4.174 26 C -0.259 4.259 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.080 0.920 39 H 0.376 0.624 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.106 0.894 48 H 0.121 0.879 49 H 0.377 0.623 50 H 0.145 0.855 51 H 0.089 0.911 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.568 -2.342 -1.717 2.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.222 2.778 3 C -0.550 4.550 4 C -0.495 4.495 5 C -0.138 4.138 6 C -0.102 4.102 7 N -0.089 5.089 8 N -0.330 5.330 9 C 0.399 3.601 10 O -0.399 6.399 11 C -0.241 4.241 12 C 0.005 3.995 13 C -0.093 4.093 14 C -0.167 4.167 15 C -0.177 4.177 16 C -0.021 4.021 17 N -0.102 5.102 18 C -0.120 4.120 19 C -0.167 4.167 20 O -0.347 6.347 21 Si 0.792 3.208 22 H -0.173 1.173 23 H -0.174 1.174 24 H -0.172 1.172 25 C -0.198 4.198 26 C -0.433 4.433 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.214 0.786 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.124 0.876 48 H 0.139 0.861 49 H 0.225 0.775 50 H 0.163 0.837 51 H 0.108 0.892 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.095 -1.915 -1.617 2.508 hybrid contribution -0.631 -0.925 -0.373 1.180 sum -0.726 -2.839 -1.991 3.543 Atomic orbital electron populations 1.26121 1.20480 1.04467 1.04746 0.79236 0.65744 0.67810 0.64984 1.26009 1.07376 1.17666 1.03972 1.26375 1.00790 1.08032 1.14350 1.21180 0.96531 1.01104 0.95028 1.22552 1.02162 0.95194 0.90274 1.62918 1.13567 1.38363 0.94082 1.45369 1.42138 1.17787 1.27659 1.17088 0.77665 0.85290 0.80092 1.90745 1.64404 1.16293 1.68438 1.19770 1.06209 0.95166 1.02971 1.20357 0.96330 0.92167 0.90654 1.20528 0.96161 0.89700 1.02959 1.21726 0.97708 1.02076 0.95178 1.21941 1.03615 0.93440 0.98671 1.22309 0.90780 0.97691 0.91366 1.43851 1.30731 1.09355 1.26246 1.20628 0.99428 0.89652 1.02339 1.24802 1.13128 0.96053 0.82681 1.86495 1.50236 1.73641 1.24295 0.85405 0.74228 0.79433 0.81753 1.17285 1.17428 1.17197 1.21749 1.02928 0.95995 0.99176 1.28059 0.91278 1.06781 1.17154 0.90781 0.91093 0.91290 0.90268 0.91402 0.91487 0.90773 0.90173 0.90939 0.90257 0.93833 0.90118 0.78567 0.88036 0.89350 0.91299 0.90193 0.89327 0.90684 0.89893 0.87602 0.86114 0.77514 0.83709 0.89190 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.52 8.65 101.05 0.87 1.40 16 2 Si 1.03 -1.31 11.99 -169.99 -2.04 -3.35 16 3 C -0.44 -0.29 8.65 101.05 0.87 0.58 16 4 C -0.41 0.43 5.03 37.64 0.19 0.62 16 5 C -0.10 0.00 5.74 -26.44 -0.15 -0.16 16 6 C 0.03 0.02 5.38 -4.31 -0.02 -0.01 16 7 N -0.27 -0.64 4.15 -56.96 -0.24 -0.88 16 8 N -0.59 -1.57 4.70 30.40 0.14 -1.43 16 9 C 0.61 3.00 7.91 -12.59 -0.10 2.90 16 10 O -0.52 -4.16 15.67 5.25 0.08 -4.08 16 11 C -0.23 -0.79 6.28 -103.48 -0.65 -1.44 16 12 C 0.12 0.32 6.57 -81.64 -0.54 -0.21 16 13 C -0.06 -0.09 5.32 -27.53 -0.15 -0.24 16 14 C -0.13 0.10 5.98 -26.45 -0.16 -0.06 16 15 C -0.14 0.27 5.92 -26.59 -0.16 0.11 16 16 C 0.10 -0.12 6.22 -3.70 -0.02 -0.15 16 17 N -0.43 -0.42 3.11 -107.37 -0.33 -0.75 16 18 C -0.01 -0.01 6.15 -81.87 -0.50 -0.51 16 19 C -0.06 0.08 3.00 36.01 0.11 0.18 16 20 O -0.54 0.83 10.28 -35.23 -0.36 0.46 16 21 Si 0.97 -1.48 26.55 -169.99 -4.51 -6.00 16 22 H -0.25 0.15 7.11 56.52 0.40 0.56 16 23 H -0.25 0.08 7.11 56.52 0.40 0.48 16 24 H -0.25 0.33 6.80 56.52 0.38 0.71 16 25 C -0.17 -0.23 9.09 -37.47 -0.34 -0.57 16 26 C -0.26 -0.19 4.86 60.52 0.29 0.11 16 27 H 0.07 -0.09 7.96 -51.92 -0.41 -0.51 16 28 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 30 H 0.08 0.18 7.96 -51.93 -0.41 -0.24 16 31 H 0.07 0.06 7.96 -51.93 -0.41 -0.35 16 32 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 33 H 0.07 -0.11 7.99 -51.93 -0.42 -0.52 16 34 H 0.08 -0.11 8.00 -51.93 -0.42 -0.52 16 35 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 36 H 0.08 0.08 7.96 -51.93 -0.41 -0.33 16 37 H 0.04 -0.02 7.78 -51.93 -0.40 -0.43 16 38 H 0.08 0.08 8.03 -51.93 -0.42 -0.34 16 39 H 0.38 0.18 7.97 -185.15 -1.48 -1.30 16 40 H 0.10 0.31 7.40 -51.93 -0.38 -0.08 16 41 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.07 -0.03 8.12 -51.93 -0.42 -0.45 16 43 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 44 H 0.09 -0.29 8.14 -51.93 -0.42 -0.71 16 45 H 0.07 -0.12 8.11 -51.93 -0.42 -0.54 16 46 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 47 H 0.11 -0.25 5.67 -51.93 -0.29 -0.55 16 48 H 0.12 -0.24 7.96 -51.93 -0.41 -0.65 16 49 H 0.38 -1.58 8.27 45.56 0.38 -1.20 16 50 H 0.15 -0.10 6.33 -52.48 -0.33 -0.43 16 51 H 0.09 0.16 7.99 -51.93 -0.41 -0.25 16 52 H 0.05 -0.02 7.92 -51.93 -0.41 -0.43 16 LS Contribution 402.21 15.07 6.06 6.06 Total: 0.00 -7.40 402.21 -11.31 -18.71 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: -9.66 Total: -11.31 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -0.45 Total: 2.56 kcal Atomic # 7 Polarization: -2.63 SS G_CDS: -0.43 Total: -3.06 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: -0.28 Total: -3.61 kcal Atomic # 14 Polarization: -2.80 SS G_CDS: -6.55 Total: -9.35 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -7.40 -11.31 -18.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_16915396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.629 kcal (2) G-P(sol) polarization free energy of solvation -7.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds