Wall clock time and date at job start Sun Mar 7 2021 09:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86303 * 109.98581 * 2 1 4 4 C 1.87527 * 110.00284 * 121.31339 * 2 1 3 5 5 C 1.53924 * 106.85293 * 163.09716 * 4 2 1 6 6 C 1.52629 * 109.31216 * 302.79740 * 5 4 2 7 7 N 1.46363 * 111.88923 * 76.51580 * 6 5 4 8 8 N 1.36601 * 110.99271 * 156.80736 * 7 6 5 9 9 C 1.34778 * 119.99690 * 235.43347 * 8 7 6 10 10 O 1.21629 * 119.99943 * 354.99138 * 9 8 7 11 11 C 1.47261 * 120.00198 * 174.99592 * 9 8 7 12 12 C 1.36333 * 126.97119 * 179.70950 * 11 9 8 13 13 C 1.51000 * 126.79251 * 0.67212 * 12 11 9 14 14 C 1.53390 * 108.30588 * 163.90619 * 13 12 11 15 15 C 1.53157 * 109.04239 * 48.27332 * 14 13 12 16 16 C 1.53125 * 109.52772 * 290.42412 * 15 14 13 17 17 N 1.35220 * 108.66293 * 179.89368 * 12 11 9 18 18 C 1.36430 * 109.89274 * 0.38003 * 17 12 11 19 19 C 1.50703 * 125.48702 * 179.78667 * 18 17 12 20 20 O 1.42897 * 109.47699 * 330.00292 * 19 18 17 21 21 Si 1.86301 * 109.46864 * 210.00060 * 19 18 17 22 22 H 1.48493 * 109.47314 * 60.00256 * 21 19 18 23 23 H 1.48499 * 109.47184 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47317 * 300.00168 * 21 19 18 25 25 C 1.34493 * 109.01441 * 359.76987 * 18 17 12 26 26 C 1.47724 * 111.30812 * 280.97928 * 7 6 5 27 27 H 1.09009 * 109.46621 * 298.68900 * 1 2 3 28 28 H 1.08997 * 109.47242 * 58.68291 * 1 2 3 29 29 H 1.08998 * 109.47247 * 178.69291 * 1 2 3 30 30 H 1.08999 * 109.46964 * 181.31343 * 3 2 1 31 31 H 1.08995 * 109.46910 * 301.30991 * 3 2 1 32 32 H 1.08998 * 109.47060 * 61.31341 * 3 2 1 33 33 H 1.09001 * 109.97477 * 43.75989 * 4 2 1 34 34 H 1.09002 * 110.05188 * 282.47432 * 4 2 1 35 35 H 1.09000 * 109.50411 * 182.84491 * 5 4 2 36 36 H 1.08997 * 109.50158 * 62.74350 * 5 4 2 37 37 H 1.09002 * 108.99260 * 315.90353 * 6 5 4 38 38 H 1.08991 * 108.93524 * 197.09881 * 6 5 4 39 39 H 0.96999 * 120.00427 * 55.43891 * 8 7 6 40 40 H 1.08999 * 109.85329 * 44.09278 * 13 12 11 41 41 H 1.09005 * 109.49908 * 283.51468 * 13 12 11 42 42 H 1.08996 * 109.54291 * 288.40148 * 14 13 12 43 43 H 1.09004 * 109.53877 * 168.14273 * 14 13 12 44 44 H 1.09001 * 109.46002 * 170.40659 * 15 14 13 45 45 H 1.08996 * 109.46353 * 50.44694 * 15 14 13 46 46 H 1.09004 * 109.56894 * 291.14714 * 16 15 14 47 47 H 1.09005 * 109.65444 * 170.86494 * 16 15 14 48 48 H 1.09007 * 109.46716 * 90.00820 * 19 18 17 49 49 H 0.96697 * 113.99991 * 300.00454 * 20 19 18 50 50 H 1.08007 * 126.81260 * 179.97438 * 25 18 17 51 51 H 1.09001 * 109.94318 * 179.68160 * 26 7 6 52 52 H 1.08994 * 109.94823 * 300.94233 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4998 1.7508 0.0000 4 6 2.5045 -0.9158 1.5055 5 6 3.9816 -1.2491 1.2292 6 6 4.0831 -2.0638 -0.0575 7 7 3.9262 -1.2262 -1.2475 8 7 4.5043 -1.8118 -2.3378 9 6 5.4349 -1.1434 -3.0475 10 8 5.6944 0.0128 -2.7733 11 6 6.1376 -1.8129 -4.1550 12 6 7.0933 -1.2744 -4.9645 13 6 7.6533 0.1262 -4.8947 14 6 8.9556 0.1654 -5.7042 15 6 8.7156 -0.4878 -7.0686 16 6 8.5104 -1.9942 -6.8859 17 7 7.4875 -2.2142 -5.8532 18 6 6.7938 -3.3703 -5.6445 19 6 6.9519 -4.6410 -6.4393 20 8 7.3413 -4.3213 -7.7765 21 14 5.3323 -5.5613 -6.4674 22 1 4.2903 -4.7106 -7.0963 23 1 5.4882 -6.8137 -7.2499 24 1 4.9276 -5.8936 -5.0778 25 6 5.9465 -3.1933 -4.6152 26 6 2.5042 -0.9183 -1.5035 27 1 -0.3633 0.4934 0.9016 28 1 -0.3633 0.5341 -0.8779 29 1 -0.3633 -1.0274 -0.0234 30 1 3.5895 1.7411 -0.0236 31 1 2.1221 2.2748 -0.8780 32 1 2.1604 2.2609 0.9015 33 1 1.9366 -1.8345 1.6524 34 1 2.4245 -0.2835 2.3897 35 1 4.3854 -1.8286 2.0594 36 1 4.5489 -0.3248 1.1202 37 1 3.3054 -2.8275 -0.0561 38 1 5.0578 -2.5503 -0.0921 39 1 4.2450 -2.7085 -2.6014 40 1 7.8570 0.3921 -3.8574 41 1 6.9347 0.8270 -5.3199 42 1 9.7333 -0.3806 -5.1703 43 1 9.2663 1.2006 -5.8451 44 1 9.5787 -0.3141 -7.7112 45 1 7.8278 -0.0533 -7.5281 46 1 9.4479 -2.4553 -6.5751 47 1 8.1806 -2.4360 -7.8263 48 1 7.7167 -5.2655 -5.9775 49 1 6.7060 -3.7663 -8.2491 50 1 5.2613 -3.9222 -4.2083 51 1 2.4136 -0.2901 -2.3896 52 1 1.9429 -1.8422 -1.6423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_16915396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:17:22 Heat of formation + Delta-G solvation = -30.093678 kcal Electronic energy + Delta-G solvation = -30284.181690 eV Core-core repulsion = 26408.550518 eV Total energy + Delta-G solvation = -3875.631172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.81396 -40.64877 -38.40139 -37.91862 -36.87501 -34.83139 -33.50107 -31.74218 -31.15302 -29.36832 -29.23613 -28.34134 -27.52375 -26.59137 -25.13248 -24.66726 -23.35970 -21.91090 -21.70968 -21.11761 -19.68364 -18.97572 -18.13915 -17.47234 -16.85919 -16.69376 -16.53252 -16.10937 -15.64341 -15.42464 -15.32980 -15.20575 -14.92071 -14.84278 -14.73402 -14.58836 -14.48053 -14.25606 -14.00867 -13.94893 -13.79087 -13.47898 -13.27612 -13.17925 -13.10322 -12.97118 -12.76111 -12.41589 -12.14744 -12.02880 -12.01606 -11.96653 -11.94309 -11.78048 -11.71981 -11.26427 -10.78784 -10.72008 -10.66392 -10.29675 -10.11409 -9.67238 -9.59634 -9.08512 0.71128 0.94940 1.31807 1.48075 1.50867 1.56321 1.79427 1.89026 1.93516 2.02952 2.27809 2.55389 2.64464 3.30016 3.46269 3.49580 3.60303 3.69446 3.80894 3.82806 4.03221 4.07996 4.22240 4.33914 4.35689 4.41064 4.44417 4.53627 4.55021 4.60788 4.69335 4.73644 4.77139 4.80015 4.81375 4.82776 4.83228 4.85904 4.86274 4.94029 4.96632 5.02349 5.11542 5.14160 5.22787 5.31584 5.48823 5.58532 5.66330 5.67153 5.86785 5.99319 6.20363 6.34119 6.51981 6.58967 7.65930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.090 2.910 3 C -0.462 4.462 4 C -0.410 4.410 5 C -0.102 4.102 6 C 0.026 3.974 7 N -0.297 5.297 8 N -0.579 5.579 9 C 0.604 3.396 10 O -0.567 6.567 11 C -0.255 4.255 12 C 0.109 3.891 13 C -0.054 4.054 14 C -0.124 4.124 15 C -0.134 4.134 16 C 0.094 3.906 17 N -0.424 5.424 18 C -0.009 4.009 19 C -0.052 4.052 20 O -0.547 6.547 21 Si 1.006 2.994 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.250 1.250 25 C -0.181 4.181 26 C -0.273 4.273 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.387 0.613 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.121 0.879 48 H 0.131 0.869 49 H 0.389 0.611 50 H 0.162 0.838 51 H 0.072 0.928 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 -3.842 -2.062 4.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.279 2.721 3 C -0.568 4.568 4 C -0.496 4.496 5 C -0.141 4.141 6 C -0.102 4.102 7 N -0.114 5.114 8 N -0.322 5.322 9 C 0.394 3.606 10 O -0.446 6.446 11 C -0.266 4.266 12 C -0.010 4.010 13 C -0.092 4.092 14 C -0.162 4.162 15 C -0.171 4.171 16 C -0.025 4.025 17 N -0.100 5.100 18 C -0.119 4.119 19 C -0.161 4.161 20 O -0.354 6.354 21 Si 0.827 3.173 22 H -0.187 1.187 23 H -0.190 1.190 24 H -0.173 1.173 25 C -0.205 4.205 26 C -0.444 4.444 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.227 0.773 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.139 0.861 48 H 0.149 0.851 49 H 0.238 0.762 50 H 0.179 0.821 51 H 0.091 0.909 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.523 -3.428 -1.986 3.996 hybrid contribution -0.479 -0.443 -0.299 0.718 sum -1.002 -3.871 -2.286 4.605 Atomic orbital electron populations 1.26132 1.19932 1.05075 1.04973 0.78343 0.65277 0.65009 0.63498 1.26302 1.06032 1.20473 1.04003 1.26394 0.99888 1.08811 1.14551 1.21201 0.97386 1.00450 0.95016 1.22586 1.02396 0.95438 0.89753 1.62926 1.14584 1.39426 0.94420 1.45289 1.41437 1.18028 1.27451 1.17436 0.77781 0.84959 0.80419 1.90709 1.65937 1.18077 1.69847 1.19876 1.07000 0.96456 1.03223 1.20508 0.96517 0.92786 0.91149 1.20446 0.97323 0.89336 1.02056 1.21703 0.96077 1.02879 0.95549 1.21934 1.04416 0.92798 0.97979 1.22530 0.90364 0.98306 0.91299 1.44059 1.30776 1.09012 1.26113 1.21011 0.98678 0.90146 1.02040 1.24857 1.13732 0.94902 0.82654 1.86473 1.50959 1.73930 1.24052 0.84908 0.73301 0.78018 0.81029 1.18716 1.19017 1.17337 1.21955 1.03660 0.95342 0.99539 1.28331 0.90629 1.07583 1.17868 0.90223 0.91270 0.90454 0.92447 0.92120 0.90743 0.89384 0.89478 0.90020 0.91865 0.92074 0.90841 0.77298 0.90277 0.90106 0.91553 0.89247 0.87260 0.90860 0.89555 0.86097 0.85139 0.76155 0.82072 0.90934 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.51 8.65 113.37 0.98 2.50 16 2 Si 1.09 -2.57 11.99 68.60 0.82 -1.75 16 3 C -0.46 -1.45 8.65 113.37 0.98 -0.47 16 4 C -0.41 1.18 5.03 72.29 0.36 1.55 16 5 C -0.10 -0.04 5.74 30.78 0.18 0.13 16 6 C 0.03 0.05 5.38 86.28 0.46 0.51 16 7 N -0.30 -1.86 4.15 -334.14 -1.39 -3.24 16 8 N -0.58 -4.13 4.70 -175.99 -0.83 -4.96 16 9 C 0.60 7.58 7.91 86.61 0.69 8.26 16 10 O -0.57 -11.15 15.67 -4.12 -0.06 -11.21 16 11 C -0.25 -2.23 6.28 -19.12 -0.12 -2.35 16 12 C 0.11 0.76 6.57 41.69 0.27 1.03 16 13 C -0.05 -0.30 5.32 30.07 0.16 -0.14 16 14 C -0.12 0.10 5.98 30.78 0.18 0.29 16 15 C -0.13 0.58 5.92 30.69 0.18 0.77 16 16 C 0.09 -0.30 6.22 86.32 0.54 0.24 16 17 N -0.42 -0.95 3.11 -493.61 -1.54 -2.48 16 18 C -0.01 -0.01 6.15 40.99 0.25 0.24 16 19 C -0.05 0.18 3.00 71.24 0.21 0.40 16 20 O -0.55 2.38 10.28 -148.98 -1.53 0.85 16 21 Si 1.01 -3.71 26.55 68.60 1.82 -1.89 16 22 H -0.26 0.40 7.11 99.48 0.71 1.11 16 23 H -0.27 0.30 7.11 99.48 0.71 1.00 16 24 H -0.25 0.89 6.80 99.48 0.68 1.56 16 25 C -0.18 -0.57 9.09 23.64 0.21 -0.36 16 26 C -0.27 -0.65 4.86 127.53 0.62 -0.03 16 27 H 0.08 -0.31 7.96 -2.38 -0.02 -0.33 16 28 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 29 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 30 H 0.06 0.43 7.96 -2.39 -0.02 0.41 16 31 H 0.06 0.25 7.96 -2.39 -0.02 0.23 16 32 H 0.07 0.08 7.96 -2.39 -0.02 0.06 16 33 H 0.09 -0.44 7.99 -2.39 -0.02 -0.46 16 34 H 0.09 -0.33 8.00 -2.39 -0.02 -0.34 16 35 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.06 0.23 7.96 -2.39 -0.02 0.22 16 37 H 0.06 -0.12 7.78 -2.39 -0.02 -0.14 16 38 H 0.07 0.22 8.03 -2.39 -0.02 0.20 16 39 H 0.39 0.76 7.97 -215.50 -1.72 -0.95 16 40 H 0.08 0.77 7.40 -2.39 -0.02 0.76 16 41 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.07 -0.01 8.12 -2.39 -0.02 -0.03 16 43 H 0.09 -0.25 8.14 -2.38 -0.02 -0.27 16 44 H 0.11 -0.89 8.14 -2.39 -0.02 -0.91 16 45 H 0.07 -0.26 8.11 -2.39 -0.02 -0.28 16 46 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 47 H 0.12 -0.75 5.67 -2.38 -0.01 -0.76 16 48 H 0.13 -0.69 7.96 -2.38 -0.02 -0.71 16 49 H 0.39 -3.74 8.27 -74.06 -0.61 -4.35 16 50 H 0.16 -0.23 6.33 -2.91 -0.02 -0.25 16 51 H 0.07 0.42 7.99 -2.39 -0.02 0.40 16 52 H 0.06 -0.06 7.92 -2.39 -0.02 -0.08 16 Total: 0.00 -19.34 402.21 2.77 -16.56 By element: Atomic # 1 Polarization: -3.75 SS G_CDS: -0.69 Total: -4.44 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 6.17 Total: 12.57 kcal Atomic # 7 Polarization: -6.93 SS G_CDS: -3.75 Total: -10.68 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -1.60 Total: -10.37 kcal Atomic # 14 Polarization: -6.28 SS G_CDS: 2.64 Total: -3.63 kcal Total: -19.34 2.77 -16.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_16915396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.532 kcal (2) G-P(sol) polarization free energy of solvation -19.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds