Wall clock time and date at job start Sun Mar 7 2021 09:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 110.06356 * 2 1 4 4 C 1.87528 * 110.00262 * 238.63767 * 2 1 3 5 5 C 1.53926 * 106.84964 * 196.90363 * 4 2 1 6 6 C 1.52625 * 109.31315 * 57.20569 * 5 4 2 7 7 N 1.46361 * 111.88927 * 283.47733 * 6 5 4 8 8 N 1.36601 * 110.99934 * 203.19515 * 7 6 5 9 9 C 1.34780 * 119.99800 * 111.06887 * 8 7 6 10 10 O 1.21277 * 120.00006 * 4.73953 * 9 8 7 11 11 C 1.50693 * 119.99760 * 184.73330 * 9 8 7 12 12 O 1.42901 * 109.47147 * 180.02562 * 11 9 8 13 13 C 1.35901 * 117.00173 * 180.02562 * 12 11 9 14 14 C 1.38705 * 120.05778 * 359.97438 * 13 12 11 15 15 C 1.38160 * 119.94893 * 180.02562 * 14 13 12 16 16 C 1.38245 * 120.05373 * 359.97438 * 15 14 13 17 17 C 1.38292 * 120.11004 * 0.02657 * 16 15 14 18 18 C 1.38117 * 120.05638 * 359.67682 * 17 16 15 19 19 C 1.50696 * 120.03203 * 180.31938 * 18 17 16 20 20 O 1.42902 * 109.46883 * 105.27176 * 19 18 17 21 21 Si 1.86306 * 109.46862 * 345.27739 * 19 18 17 22 22 H 1.48499 * 109.47046 * 59.99737 * 21 19 18 23 23 H 1.48504 * 109.47128 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47182 * 299.99668 * 21 19 18 25 25 C 1.47731 * 111.30571 * 79.01729 * 7 6 5 26 26 H 1.08997 * 109.46610 * 298.63762 * 1 2 3 27 27 H 1.09004 * 109.46830 * 58.63433 * 1 2 3 28 28 H 1.08998 * 109.47002 * 178.63400 * 1 2 3 29 29 H 1.08995 * 109.46985 * 181.36077 * 3 2 1 30 30 H 1.09000 * 109.47050 * 301.36433 * 3 2 1 31 31 H 1.09003 * 109.46966 * 61.36568 * 3 2 1 32 32 H 1.09001 * 109.97558 * 316.23745 * 4 2 1 33 33 H 1.08996 * 109.97589 * 77.47573 * 4 2 1 34 34 H 1.09002 * 109.49718 * 177.15169 * 5 4 2 35 35 H 1.08996 * 109.49702 * 297.22205 * 5 4 2 36 36 H 1.08994 * 108.99941 * 162.85667 * 6 5 4 37 37 H 1.09001 * 108.99841 * 44.09716 * 6 5 4 38 38 H 0.97000 * 119.99848 * 290.79206 * 8 7 6 39 39 H 1.09002 * 109.47374 * 300.00093 * 11 9 8 40 40 H 1.08997 * 109.47563 * 60.00194 * 11 9 8 41 41 H 1.08003 * 120.02513 * 359.97438 * 14 13 12 42 42 H 1.08001 * 119.97924 * 179.97438 * 15 14 13 43 43 H 1.08004 * 119.94363 * 180.02562 * 16 15 14 44 44 H 1.08003 * 119.97020 * 179.97438 * 17 16 15 45 45 H 1.08991 * 109.47927 * 225.27473 * 19 18 17 46 46 H 0.96699 * 114.00576 * 300.00191 * 20 19 18 47 47 H 1.09006 * 109.94180 * 59.06418 * 25 7 6 48 48 H 1.08994 * 109.94603 * 180.31887 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5022 1.7499 0.0000 4 6 2.5045 -0.9171 -1.5047 5 6 3.9816 -1.2501 -1.2281 6 6 4.0831 -2.0637 0.0593 7 7 3.9263 -1.2252 1.2485 8 7 4.5043 -1.8098 2.3394 9 6 5.6127 -1.2706 2.8848 10 8 6.0475 -0.2205 2.4617 11 6 6.3116 -1.9727 4.0204 12 8 7.4508 -1.2097 4.4231 13 6 8.1973 -1.7074 5.4438 14 6 7.8406 -2.9051 6.0457 15 6 8.6009 -3.4088 7.0835 16 6 9.7167 -2.7204 7.5219 17 6 10.0745 -1.5260 6.9235 18 6 9.3212 -1.0214 5.8816 19 6 9.7157 0.2764 5.2251 20 8 10.2996 0.0066 3.9491 21 14 10.9526 1.1644 6.2987 22 1 12.1564 0.3129 6.4751 23 1 11.3419 2.4431 5.6516 24 1 10.3460 1.4448 7.6248 25 6 2.5043 -0.9169 1.5042 26 1 -0.3632 0.4925 0.9020 27 1 -0.3633 0.5349 -0.8775 28 1 -0.3633 -1.0274 -0.0245 29 1 3.5918 1.7387 -0.0244 30 1 2.1244 2.2747 -0.8775 31 1 2.1642 2.2602 0.9020 32 1 1.9367 -1.8360 -1.6508 33 1 2.4231 -0.2849 -2.3888 34 1 4.3853 -1.8304 -2.0578 35 1 4.5490 -0.3257 -1.1204 36 1 5.0572 -2.5514 0.0950 37 1 3.3055 -2.8275 0.0586 38 1 4.1148 -2.6106 2.7240 39 1 5.6263 -2.0735 4.8620 40 1 6.6333 -2.9614 3.6933 41 1 6.9687 -3.4431 5.7038 42 1 8.3233 -4.3411 7.5528 43 1 10.3100 -3.1159 8.3330 44 1 10.9464 -0.9899 7.2680 45 1 8.8323 0.9015 5.0956 46 1 11.0922 -0.5459 3.9881 47 1 1.9429 -1.8408 1.6439 48 1 2.4135 -0.2880 2.3897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_2989392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:17:38 Heat of formation + Delta-G solvation = -75.470391 kcal Electronic energy + Delta-G solvation = -27433.860980 eV Core-core repulsion = 23614.081082 eV Total energy + Delta-G solvation = -3819.779897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.56706 -40.73716 -38.92565 -37.93784 -37.33871 -34.93266 -32.76861 -32.12204 -31.09350 -29.44729 -29.03399 -28.41647 -27.60971 -26.58449 -24.89790 -23.44008 -22.57898 -21.91255 -21.55938 -19.47716 -18.81666 -17.91903 -17.81693 -17.45619 -16.96339 -16.66970 -16.46893 -15.81541 -15.77385 -15.29205 -15.13348 -15.04908 -14.81729 -14.64875 -14.49532 -14.40522 -14.10873 -13.85912 -13.73441 -13.60457 -13.45441 -13.27484 -13.15886 -13.02164 -12.98870 -12.53614 -12.18285 -12.09954 -12.04051 -12.01018 -11.81307 -11.52281 -11.27145 -10.89105 -10.64902 -10.42303 -10.23558 -10.20339 -9.99326 -9.69187 -9.19731 0.21197 0.40930 1.13238 1.26109 1.48664 1.59326 1.61137 1.70642 1.77903 1.88270 2.00948 2.44891 2.53449 2.68531 3.31392 3.53610 3.62150 3.78968 3.79680 3.89067 3.91484 3.95886 4.02447 4.10622 4.26717 4.31352 4.33716 4.48090 4.51835 4.59074 4.63162 4.64182 4.68536 4.73094 4.77266 4.86539 4.92816 4.99769 5.01810 5.23756 5.26460 5.31427 5.36211 5.40472 5.47743 5.68068 5.69177 5.73928 6.22835 6.26673 6.44772 6.77468 7.51937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.033 2.967 3 C -0.444 4.444 4 C -0.410 4.410 5 C -0.101 4.101 6 C 0.025 3.975 7 N -0.274 5.274 8 N -0.586 5.586 9 C 0.528 3.472 10 O -0.481 6.481 11 C 0.043 3.957 12 O -0.275 6.275 13 C 0.155 3.845 14 C -0.212 4.212 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.088 4.088 18 C -0.148 4.148 19 C -0.071 4.071 20 O -0.529 6.529 21 Si 0.950 3.050 22 H -0.253 1.253 23 H -0.252 1.252 24 H -0.250 1.250 25 C -0.260 4.260 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.378 0.622 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.118 0.882 46 H 0.370 0.630 47 H 0.054 0.946 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -5.278 1.481 6.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.226 2.774 3 C -0.552 4.552 4 C -0.496 4.496 5 C -0.140 4.140 6 C -0.103 4.103 7 N -0.090 5.090 8 N -0.333 5.333 9 C 0.312 3.688 10 O -0.350 6.350 11 C -0.037 4.037 12 O -0.187 6.187 13 C 0.109 3.891 14 C -0.231 4.231 15 C -0.091 4.091 16 C -0.169 4.169 17 C -0.106 4.106 18 C -0.149 4.149 19 C -0.182 4.182 20 O -0.333 6.333 21 Si 0.773 3.227 22 H -0.177 1.177 23 H -0.176 1.176 24 H -0.173 1.173 25 C -0.432 4.432 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.216 0.784 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.136 0.864 46 H 0.216 0.784 47 H 0.073 0.927 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.363 -3.102 1.338 4.122 hybrid contribution -0.805 -2.297 0.478 2.481 sum -3.168 -5.399 1.816 6.518 Atomic orbital electron populations 1.26120 1.20315 1.04553 1.04852 0.79194 0.65797 0.67703 0.64718 1.26034 1.07381 1.17680 1.04153 1.26382 1.00733 1.08074 1.14450 1.21187 0.96576 1.01223 0.94974 1.22609 1.02150 0.95204 0.90294 1.62961 1.14013 1.38159 0.93834 1.45378 1.28786 1.29870 1.29256 1.19822 0.79976 0.85750 0.83224 1.90783 1.63223 1.20748 1.60232 1.22392 0.88585 0.95483 0.97251 1.86235 1.37336 1.46954 1.48128 1.18760 0.90781 0.92098 0.87483 1.21294 1.03449 0.97199 1.01150 1.21012 0.93975 0.99167 0.94948 1.21049 0.98406 0.95784 1.01671 1.21011 0.98688 0.96266 0.94663 1.19680 0.95982 0.99555 0.99680 1.24860 1.05194 0.97009 0.91095 1.86625 1.45985 1.73675 1.27045 0.85746 0.78360 0.80103 0.78507 1.17697 1.17602 1.17329 1.28069 0.90489 1.07057 1.17631 0.91052 0.90665 0.91226 0.90285 0.91329 0.91347 0.90719 0.90041 0.90818 0.90150 0.90222 0.93729 0.78357 0.88963 0.88852 0.85258 0.85383 0.85368 0.85210 0.86408 0.78401 0.92718 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.94 8.65 101.05 0.87 1.81 16 2 Si 1.03 -2.33 11.99 -169.99 -2.04 -4.36 16 3 C -0.44 0.00 8.65 101.05 0.87 0.87 16 4 C -0.41 0.70 5.04 37.64 0.19 0.89 16 5 C -0.10 0.05 5.74 -26.44 -0.15 -0.11 16 6 C 0.03 -0.01 5.38 -4.31 -0.02 -0.03 16 7 N -0.27 -0.25 4.15 -56.96 -0.24 -0.49 16 8 N -0.59 -0.07 4.71 31.22 0.15 0.08 16 9 C 0.53 1.45 8.01 -10.99 -0.09 1.37 16 10 O -0.48 -3.86 16.83 -14.35 -0.24 -4.10 16 11 C 0.04 0.00 5.22 36.00 0.19 0.18 16 12 O -0.28 -1.00 9.00 -39.34 -0.35 -1.35 16 13 C 0.15 0.37 6.66 -39.22 -0.26 0.11 16 14 C -0.21 -0.03 9.04 -39.44 -0.36 -0.39 16 15 C -0.07 0.03 10.04 -39.61 -0.40 -0.37 16 16 C -0.15 0.01 10.04 -39.56 -0.40 -0.39 16 17 C -0.09 -0.07 8.66 -39.61 -0.34 -0.41 16 18 C -0.15 -0.32 5.27 -104.48 -0.55 -0.87 16 19 C -0.07 -0.17 2.38 36.00 0.09 -0.08 16 20 O -0.53 -1.79 12.88 -35.23 -0.45 -2.24 16 21 Si 0.95 0.80 25.48 -169.99 -4.33 -3.53 16 22 H -0.25 -0.03 6.74 56.52 0.38 0.35 16 23 H -0.25 -0.61 7.11 56.52 0.40 -0.21 16 24 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 25 C -0.26 0.26 4.85 60.52 0.29 0.56 16 26 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 29 H 0.08 0.13 7.96 -51.93 -0.41 -0.28 16 30 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 31 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 32 H 0.07 -0.17 7.99 -51.93 -0.42 -0.58 16 33 H 0.08 -0.15 7.99 -51.93 -0.42 -0.56 16 34 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 35 H 0.08 0.06 7.96 -51.93 -0.41 -0.35 16 36 H 0.08 0.01 8.03 -51.93 -0.42 -0.40 16 37 H 0.04 -0.08 7.78 -51.93 -0.40 -0.48 16 38 H 0.38 -1.21 8.83 -185.15 -1.63 -2.84 16 39 H 0.09 -0.26 7.66 -51.93 -0.40 -0.66 16 40 H 0.09 -0.24 7.66 -51.93 -0.40 -0.64 16 41 H 0.13 -0.31 6.30 -52.48 -0.33 -0.64 16 42 H 0.13 -0.33 8.06 -52.49 -0.42 -0.75 16 43 H 0.13 -0.25 8.06 -52.48 -0.42 -0.68 16 44 H 0.13 -0.08 4.89 -52.48 -0.26 -0.34 16 45 H 0.12 0.38 7.83 -51.93 -0.41 -0.02 16 46 H 0.37 -0.19 8.70 45.56 0.40 0.20 16 47 H 0.05 -0.13 7.92 -51.93 -0.41 -0.54 16 48 H 0.09 -0.04 7.99 -51.93 -0.41 -0.45 16 LS Contribution 389.20 15.07 5.87 5.87 Total: 0.00 -9.64 389.20 -10.19 -19.84 By element: Atomic # 1 Polarization: -4.35 SS G_CDS: -8.48 Total: -12.84 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.06 Total: 3.14 kcal Atomic # 7 Polarization: -0.32 SS G_CDS: -0.09 Total: -0.40 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -1.05 Total: -7.70 kcal Atomic # 14 Polarization: -1.52 SS G_CDS: -6.37 Total: -7.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -9.64 -10.19 -19.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_2989392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.635 kcal (2) G-P(sol) polarization free energy of solvation -9.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds