Wall clock time and date at job start Sun Mar 7 2021 09:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 110.06356 * 2 1 4 4 C 1.87528 * 110.00262 * 238.63767 * 2 1 3 5 5 C 1.53926 * 106.84964 * 196.90363 * 4 2 1 6 6 C 1.52625 * 109.31315 * 57.20569 * 5 4 2 7 7 N 1.46361 * 111.88927 * 283.47733 * 6 5 4 8 8 N 1.36601 * 110.99934 * 203.19515 * 7 6 5 9 9 C 1.34780 * 119.99800 * 111.06887 * 8 7 6 10 10 O 1.21277 * 120.00006 * 4.73953 * 9 8 7 11 11 C 1.50693 * 119.99760 * 184.73330 * 9 8 7 12 12 O 1.42901 * 109.47147 * 180.02562 * 11 9 8 13 13 C 1.35901 * 117.00173 * 180.02562 * 12 11 9 14 14 C 1.38705 * 120.05778 * 359.97438 * 13 12 11 15 15 C 1.38160 * 119.94893 * 180.02562 * 14 13 12 16 16 C 1.38245 * 120.05373 * 359.97438 * 15 14 13 17 17 C 1.38292 * 120.11004 * 0.02657 * 16 15 14 18 18 C 1.38117 * 120.05638 * 359.67682 * 17 16 15 19 19 C 1.50696 * 120.03203 * 180.31938 * 18 17 16 20 20 O 1.42902 * 109.46883 * 105.27176 * 19 18 17 21 21 Si 1.86306 * 109.46862 * 345.27739 * 19 18 17 22 22 H 1.48499 * 109.47046 * 59.99737 * 21 19 18 23 23 H 1.48504 * 109.47128 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47182 * 299.99668 * 21 19 18 25 25 C 1.47731 * 111.30571 * 79.01729 * 7 6 5 26 26 H 1.08997 * 109.46610 * 298.63762 * 1 2 3 27 27 H 1.09004 * 109.46830 * 58.63433 * 1 2 3 28 28 H 1.08998 * 109.47002 * 178.63400 * 1 2 3 29 29 H 1.08995 * 109.46985 * 181.36077 * 3 2 1 30 30 H 1.09000 * 109.47050 * 301.36433 * 3 2 1 31 31 H 1.09003 * 109.46966 * 61.36568 * 3 2 1 32 32 H 1.09001 * 109.97558 * 316.23745 * 4 2 1 33 33 H 1.08996 * 109.97589 * 77.47573 * 4 2 1 34 34 H 1.09002 * 109.49718 * 177.15169 * 5 4 2 35 35 H 1.08996 * 109.49702 * 297.22205 * 5 4 2 36 36 H 1.08994 * 108.99941 * 162.85667 * 6 5 4 37 37 H 1.09001 * 108.99841 * 44.09716 * 6 5 4 38 38 H 0.97000 * 119.99848 * 290.79206 * 8 7 6 39 39 H 1.09002 * 109.47374 * 300.00093 * 11 9 8 40 40 H 1.08997 * 109.47563 * 60.00194 * 11 9 8 41 41 H 1.08003 * 120.02513 * 359.97438 * 14 13 12 42 42 H 1.08001 * 119.97924 * 179.97438 * 15 14 13 43 43 H 1.08004 * 119.94363 * 180.02562 * 16 15 14 44 44 H 1.08003 * 119.97020 * 179.97438 * 17 16 15 45 45 H 1.08991 * 109.47927 * 225.27473 * 19 18 17 46 46 H 0.96699 * 114.00576 * 300.00191 * 20 19 18 47 47 H 1.09006 * 109.94180 * 59.06418 * 25 7 6 48 48 H 1.08994 * 109.94603 * 180.31887 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5022 1.7499 0.0000 4 6 2.5045 -0.9171 -1.5047 5 6 3.9816 -1.2501 -1.2281 6 6 4.0831 -2.0637 0.0593 7 7 3.9263 -1.2252 1.2485 8 7 4.5043 -1.8098 2.3394 9 6 5.6127 -1.2706 2.8848 10 8 6.0475 -0.2205 2.4617 11 6 6.3116 -1.9727 4.0204 12 8 7.4508 -1.2097 4.4231 13 6 8.1973 -1.7074 5.4438 14 6 7.8406 -2.9051 6.0457 15 6 8.6009 -3.4088 7.0835 16 6 9.7167 -2.7204 7.5219 17 6 10.0745 -1.5260 6.9235 18 6 9.3212 -1.0214 5.8816 19 6 9.7157 0.2764 5.2251 20 8 10.2996 0.0066 3.9491 21 14 10.9526 1.1644 6.2987 22 1 12.1564 0.3129 6.4751 23 1 11.3419 2.4431 5.6516 24 1 10.3460 1.4448 7.6248 25 6 2.5043 -0.9169 1.5042 26 1 -0.3632 0.4925 0.9020 27 1 -0.3633 0.5349 -0.8775 28 1 -0.3633 -1.0274 -0.0245 29 1 3.5918 1.7387 -0.0244 30 1 2.1244 2.2747 -0.8775 31 1 2.1642 2.2602 0.9020 32 1 1.9367 -1.8360 -1.6508 33 1 2.4231 -0.2849 -2.3888 34 1 4.3853 -1.8304 -2.0578 35 1 4.5490 -0.3257 -1.1204 36 1 5.0572 -2.5514 0.0950 37 1 3.3055 -2.8275 0.0586 38 1 4.1148 -2.6106 2.7240 39 1 5.6263 -2.0735 4.8620 40 1 6.6333 -2.9614 3.6933 41 1 6.9687 -3.4431 5.7038 42 1 8.3233 -4.3411 7.5528 43 1 10.3100 -3.1159 8.3330 44 1 10.9464 -0.9899 7.2680 45 1 8.8323 0.9015 5.0956 46 1 11.0922 -0.5459 3.9881 47 1 1.9429 -1.8408 1.6439 48 1 2.4135 -0.2880 2.3897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_2989392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:17:37 Heat of formation + Delta-G solvation = -72.864296 kcal Electronic energy + Delta-G solvation = -27433.747971 eV Core-core repulsion = 23614.081082 eV Total energy + Delta-G solvation = -3819.666889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.62830 -40.82277 -38.97761 -38.09937 -37.47303 -34.97629 -32.79607 -32.16610 -31.08006 -29.35583 -29.02599 -28.35732 -27.52621 -26.66708 -24.87007 -23.43339 -22.61306 -21.87285 -21.68040 -19.51891 -18.86112 -18.04568 -17.89113 -17.50049 -16.98291 -16.73467 -16.47695 -15.93615 -15.81721 -15.29829 -15.22630 -15.06381 -14.81770 -14.70892 -14.56376 -14.36885 -13.97690 -13.81345 -13.79704 -13.50710 -13.46030 -13.19542 -13.12069 -13.02025 -12.96926 -12.53336 -12.23023 -12.07353 -12.03916 -11.98134 -11.84719 -11.62592 -11.31945 -10.82574 -10.76492 -10.41916 -10.34141 -10.23339 -9.97749 -9.64812 -9.21895 0.22598 0.40718 1.14783 1.16072 1.40489 1.48730 1.50897 1.76722 1.89123 1.89584 2.02740 2.48628 2.62053 2.69919 3.31255 3.55671 3.60636 3.76878 3.87342 3.95771 4.00583 4.05562 4.11767 4.16690 4.31042 4.37433 4.42046 4.52740 4.53891 4.67073 4.67664 4.73275 4.79338 4.80726 4.84520 4.85955 4.91491 4.97805 5.08773 5.28125 5.29634 5.35741 5.47039 5.51392 5.58547 5.65500 5.73836 5.80511 6.17548 6.24578 6.44870 6.75697 7.47004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.094 2.906 3 C -0.468 4.468 4 C -0.414 4.414 5 C -0.105 4.105 6 C 0.027 3.973 7 N -0.304 5.304 8 N -0.572 5.572 9 C 0.525 3.475 10 O -0.548 6.548 11 C 0.043 3.957 12 O -0.310 6.310 13 C 0.132 3.868 14 C -0.211 4.211 15 C -0.075 4.075 16 C -0.155 4.155 17 C -0.097 4.097 18 C -0.168 4.168 19 C -0.081 4.081 20 O -0.554 6.554 21 Si 0.993 3.007 22 H -0.234 1.234 23 H -0.280 1.280 24 H -0.254 1.254 25 C -0.269 4.269 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.399 0.601 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.141 0.859 45 H 0.094 0.906 46 H 0.384 0.616 47 H 0.076 0.924 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.161 -7.977 2.503 9.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.283 2.717 3 C -0.573 4.573 4 C -0.500 4.500 5 C -0.144 4.144 6 C -0.101 4.101 7 N -0.121 5.121 8 N -0.318 5.318 9 C 0.311 3.689 10 O -0.423 6.423 11 C -0.036 4.036 12 O -0.223 6.223 13 C 0.086 3.914 14 C -0.230 4.230 15 C -0.093 4.093 16 C -0.173 4.173 17 C -0.114 4.114 18 C -0.169 4.169 19 C -0.190 4.190 20 O -0.360 6.360 21 Si 0.816 3.184 22 H -0.157 1.157 23 H -0.206 1.206 24 H -0.177 1.177 25 C -0.440 4.440 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.240 0.760 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.173 0.827 42 H 0.172 0.828 43 H 0.167 0.833 44 H 0.158 0.842 45 H 0.112 0.888 46 H 0.232 0.768 47 H 0.094 0.906 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.417 -5.849 2.372 7.178 hybrid contribution -0.510 -1.455 0.139 1.548 sum -3.927 -7.304 2.512 8.664 Atomic orbital electron populations 1.26126 1.19738 1.05250 1.04970 0.78273 0.65286 0.64583 0.63591 1.26387 1.05899 1.21042 1.04017 1.26444 0.99773 1.08928 1.14823 1.21207 0.97445 1.00368 0.95334 1.22594 1.02409 0.95377 0.89704 1.62914 1.15259 1.39486 0.94438 1.45228 1.27919 1.29978 1.28713 1.20472 0.80071 0.85010 0.83345 1.90753 1.65222 1.23735 1.62559 1.22600 0.88255 0.95575 0.97161 1.86189 1.38588 1.48553 1.48925 1.19031 0.91165 0.93276 0.87893 1.21602 1.04219 0.96307 1.00841 1.21386 0.93490 0.99917 0.94508 1.21393 0.98716 0.95315 1.01886 1.21177 0.98964 0.96912 0.94374 1.19799 0.96864 0.99644 1.00597 1.25029 1.05181 0.97691 0.91096 1.86569 1.47006 1.74249 1.28222 0.85134 0.77937 0.78322 0.77044 1.15715 1.20573 1.17727 1.28233 0.89652 1.08163 1.17988 0.91051 0.90503 0.90201 0.92743 0.90980 0.91956 0.89206 0.89862 0.90322 0.92326 0.91139 0.91567 0.76035 0.85861 0.86003 0.82678 0.82805 0.83298 0.84153 0.88780 0.76760 0.90582 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.43 8.65 113.37 0.98 3.41 16 2 Si 1.09 -4.79 11.99 68.60 0.82 -3.97 16 3 C -0.47 -1.08 8.65 113.37 0.98 -0.10 16 4 C -0.41 1.58 5.04 72.29 0.36 1.94 16 5 C -0.10 0.01 5.74 30.78 0.18 0.18 16 6 C 0.03 -0.01 5.38 86.28 0.46 0.45 16 7 N -0.30 -0.80 4.15 -334.13 -1.39 -2.19 16 8 N -0.57 -0.34 4.71 -173.54 -0.82 -1.16 16 9 C 0.52 3.72 8.01 87.65 0.70 4.43 16 10 O -0.55 -10.79 16.83 16.02 0.27 -10.52 16 11 C 0.04 0.00 5.22 71.23 0.37 0.37 16 12 O -0.31 -2.82 9.00 -73.40 -0.66 -3.48 16 13 C 0.13 0.73 6.66 22.51 0.15 0.88 16 14 C -0.21 0.18 9.04 22.36 0.20 0.38 16 15 C -0.08 0.20 10.04 22.25 0.22 0.42 16 16 C -0.16 0.23 10.04 22.28 0.22 0.45 16 17 C -0.10 -0.13 8.66 22.25 0.19 0.06 16 18 C -0.17 -0.94 5.27 -19.77 -0.10 -1.05 16 19 C -0.08 -0.58 2.38 71.23 0.17 -0.41 16 20 O -0.55 -5.24 12.88 -148.98 -1.92 -7.16 16 21 Si 0.99 2.76 25.48 68.60 1.75 4.50 16 22 H -0.23 0.11 6.74 99.48 0.67 0.78 16 23 H -0.28 -1.96 7.11 99.48 0.71 -1.25 16 24 H -0.25 -0.78 7.11 99.48 0.71 -0.07 16 25 C -0.27 0.57 4.85 127.53 0.62 1.19 16 26 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 27 H 0.08 -0.40 7.96 -2.38 -0.02 -0.41 16 28 H 0.08 -0.54 7.96 -2.39 -0.02 -0.56 16 29 H 0.05 0.39 7.96 -2.39 -0.02 0.37 16 30 H 0.07 0.06 7.96 -2.39 -0.02 0.04 16 31 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 32 H 0.09 -0.57 7.99 -2.39 -0.02 -0.59 16 33 H 0.08 -0.32 7.99 -2.39 -0.02 -0.34 16 34 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.06 0.25 7.96 -2.39 -0.02 0.23 16 36 H 0.07 0.08 8.03 -2.39 -0.02 0.06 16 37 H 0.07 -0.33 7.78 -2.39 -0.02 -0.35 16 38 H 0.40 -2.94 8.83 -215.50 -1.90 -4.85 16 39 H 0.12 -0.84 7.66 -2.39 -0.02 -0.86 16 40 H 0.12 -0.76 7.66 -2.39 -0.02 -0.78 16 41 H 0.16 -1.12 6.30 -2.91 -0.02 -1.14 16 42 H 0.15 -1.26 8.06 -2.91 -0.02 -1.28 16 43 H 0.15 -0.92 8.06 -2.91 -0.02 -0.94 16 44 H 0.14 -0.26 4.89 -2.91 -0.01 -0.27 16 45 H 0.09 1.01 7.83 -2.39 -0.02 0.99 16 46 H 0.38 0.37 8.70 -74.06 -0.64 -0.27 16 47 H 0.08 -0.50 7.92 -2.38 -0.02 -0.52 16 48 H 0.08 -0.01 7.99 -2.39 -0.02 -0.03 16 Total: 0.00 -26.64 389.20 2.91 -23.73 By element: Atomic # 1 Polarization: -11.51 SS G_CDS: -0.86 Total: -12.37 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 5.72 Total: 12.61 kcal Atomic # 7 Polarization: -1.15 SS G_CDS: -2.20 Total: -3.35 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -2.31 Total: -21.15 kcal Atomic # 14 Polarization: -2.04 SS G_CDS: 2.57 Total: 0.53 kcal Total: -26.64 2.91 -23.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_2989392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.135 kcal (2) G-P(sol) polarization free energy of solvation -26.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds