Wall clock time and date at job start Sun Mar 7 2021 09:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86300 * 110.05958 * 2 1 4 4 C 1.87522 * 110.00213 * 238.63794 * 2 1 3 5 5 C 1.53934 * 106.84776 * 284.49838 * 4 2 1 6 6 C 1.52627 * 109.31005 * 302.79521 * 5 4 2 7 7 N 1.46530 * 111.93705 * 76.54573 * 6 5 4 8 8 N 1.36601 * 111.12684 * 156.83797 * 7 6 5 9 9 C 1.34780 * 119.99731 * 244.31145 * 8 7 6 10 10 O 1.21280 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.50694 * 119.99837 * 180.02562 * 9 8 7 12 12 O 1.42897 * 109.47450 * 180.02562 * 11 9 8 13 13 C 1.35899 * 117.00376 * 180.02562 * 12 11 9 14 14 C 1.38729 * 120.05384 * 359.72092 * 13 12 11 15 15 C 1.38150 * 119.94034 * 179.74601 * 14 13 12 16 16 C 1.38262 * 120.05484 * 0.51185 * 15 14 13 17 17 C 1.50702 * 119.94153 * 179.74495 * 16 15 14 18 18 O 1.42904 * 109.46766 * 245.01924 * 17 16 15 19 19 Si 1.86298 * 109.47507 * 5.01772 * 17 16 15 20 20 H 1.48502 * 109.46728 * 60.00097 * 19 17 16 21 21 H 1.48499 * 109.47327 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47105 * 300.00236 * 19 17 16 23 23 C 1.38265 * 120.11754 * 359.76299 * 16 15 14 24 24 C 1.38150 * 120.04791 * 359.97438 * 23 16 15 25 25 C 1.47730 * 111.20480 * 281.03160 * 7 6 5 26 26 H 1.08998 * 109.47222 * 298.63822 * 1 2 3 27 27 H 1.09007 * 109.47203 * 58.63488 * 1 2 3 28 28 H 1.08996 * 109.47410 * 178.63624 * 1 2 3 29 29 H 1.09001 * 109.46718 * 181.35940 * 3 2 1 30 30 H 1.08994 * 109.47747 * 301.36054 * 3 2 1 31 31 H 1.09002 * 109.47179 * 61.36506 * 3 2 1 32 32 H 1.08998 * 109.98002 * 43.82883 * 4 2 1 33 33 H 1.09000 * 109.97611 * 165.07518 * 4 2 1 34 34 H 1.09000 * 109.50033 * 62.74607 * 5 4 2 35 35 H 1.08994 * 109.49732 * 182.81469 * 5 4 2 36 36 H 1.09002 * 108.99733 * 197.14019 * 6 5 4 37 37 H 1.08999 * 109.00124 * 315.90161 * 6 5 4 38 38 H 0.97001 * 120.00235 * 64.31553 * 8 7 6 39 39 H 1.08996 * 109.47235 * 299.99912 * 11 9 8 40 40 H 1.09007 * 109.47495 * 59.99564 * 11 9 8 41 41 H 1.07994 * 120.02972 * 0.02562 * 14 13 12 42 42 H 1.08001 * 119.96993 * 180.23143 * 15 14 13 43 43 H 1.09000 * 109.47211 * 125.02151 * 17 16 15 44 44 H 0.96692 * 114.00098 * 60.00299 * 18 17 16 45 45 H 1.07993 * 119.97538 * 179.97438 * 23 16 15 46 46 H 1.08002 * 120.02584 * 179.97438 * 24 23 16 47 47 H 1.09002 * 109.94931 * 300.84441 * 25 7 6 48 48 H 1.08998 * 109.94981 * 179.67542 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7500 0.0000 4 6 2.5045 -0.9171 -1.5047 5 6 2.3105 -2.4189 -1.2280 6 6 3.0398 -2.7933 0.0594 7 7 2.3057 -2.3587 1.2507 8 7 2.6560 -3.1006 2.3428 9 6 1.7414 -3.8864 2.9452 10 8 0.6074 -3.9343 2.5178 11 6 2.1277 -4.7044 4.1503 12 8 0.9950 -5.4482 4.6042 13 6 1.1744 -6.2433 5.6916 14 6 2.4165 -6.3108 6.3057 15 6 2.5949 -7.1158 7.4141 16 6 1.5394 -7.8619 7.9051 17 6 1.7383 -8.7436 9.1110 18 8 1.5724 -10.1117 8.7332 19 14 3.4549 -8.4904 9.7892 20 1 3.6273 -7.0686 10.1817 21 1 3.6511 -9.3597 10.9771 22 1 4.4549 -8.8415 8.7489 23 6 0.3019 -7.8007 7.2915 24 6 0.1171 -6.9931 6.1860 25 6 2.5043 -0.9169 1.5043 26 1 -0.3633 0.4925 0.9019 27 1 -0.3634 0.5349 -0.8775 28 1 -0.3634 -1.0273 -0.0245 29 1 3.5917 1.7388 -0.0244 30 1 2.1244 2.2748 -0.8774 31 1 2.1640 2.2602 0.9020 32 1 1.9374 -0.6250 -2.3885 33 1 3.5620 -0.6977 -1.6516 34 1 1.2475 -2.6346 -1.1199 35 1 2.7165 -2.9971 -2.0580 36 1 3.1636 -3.8757 0.0951 37 1 4.0240 -2.3249 0.0587 38 1 3.5628 -3.0619 2.6849 39 1 2.9292 -5.3922 3.8809 40 1 2.4697 -4.0415 4.9451 41 1 3.2422 -5.7311 5.9202 42 1 3.5607 -7.1658 7.8948 43 1 1.0043 -8.4859 9.8745 44 1 2.1939 -10.4108 8.0555 45 1 -0.5208 -8.3848 7.6767 46 1 -0.8496 -6.9459 5.7068 47 1 3.5646 -0.7065 1.6440 48 1 1.9456 -0.6147 2.3901 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_2989410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:17:50 Heat of formation + Delta-G solvation = -78.111724 kcal Electronic energy + Delta-G solvation = -26684.402501 eV Core-core repulsion = 22864.508067 eV Total energy + Delta-G solvation = -3819.894434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.55202 -40.76109 -39.27074 -38.23514 -37.09300 -34.98663 -32.58578 -31.99250 -31.67084 -29.49406 -29.24407 -28.44350 -27.64487 -26.26118 -24.90989 -23.88936 -22.42636 -21.94218 -21.64266 -19.54831 -18.91411 -18.22091 -17.86478 -17.51052 -16.99763 -16.60043 -16.52392 -16.07730 -15.65585 -15.42220 -15.20587 -15.06161 -14.87990 -14.77824 -14.44607 -14.43737 -14.14019 -13.88622 -13.76953 -13.63750 -13.57403 -13.46643 -13.29911 -13.18766 -13.04144 -12.31262 -12.21780 -12.14105 -12.11760 -12.07594 -12.06481 -11.60035 -11.32540 -10.91598 -10.71082 -10.45889 -10.41070 -10.23976 -10.04545 -9.79772 -9.22473 0.28207 0.29405 1.07624 1.13654 1.39143 1.48209 1.54409 1.64807 1.74888 1.84891 1.88605 2.39771 2.50005 2.65562 3.25831 3.46501 3.48950 3.66317 3.72682 3.85539 3.86097 3.87190 3.89973 4.05813 4.24618 4.28325 4.43329 4.44113 4.53950 4.55247 4.60277 4.61981 4.65117 4.66166 4.74213 4.83707 4.89717 4.94205 4.97613 5.14313 5.19825 5.24279 5.32399 5.38296 5.50069 5.66028 5.67355 5.69144 6.16381 6.21082 6.38299 6.55184 7.45039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.444 4.444 2 Si 1.034 2.966 3 C -0.450 4.450 4 C -0.410 4.410 5 C -0.101 4.101 6 C 0.026 3.974 7 N -0.274 5.274 8 N -0.584 5.584 9 C 0.529 3.471 10 O -0.486 6.486 11 C 0.044 3.956 12 O -0.287 6.287 13 C 0.135 3.865 14 C -0.206 4.206 15 C -0.084 4.084 16 C -0.158 4.158 17 C -0.076 4.076 18 O -0.539 6.539 19 Si 0.949 3.051 20 H -0.251 1.251 21 H -0.254 1.254 22 H -0.253 1.253 23 C -0.048 4.048 24 C -0.145 4.145 25 C -0.260 4.260 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.379 0.621 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.376 0.624 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.054 0.946 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.756 2.404 -0.503 6.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.226 2.774 3 C -0.559 4.559 4 C -0.497 4.497 5 C -0.139 4.139 6 C -0.102 4.102 7 N -0.090 5.090 8 N -0.331 5.331 9 C 0.313 3.687 10 O -0.355 6.355 11 C -0.036 4.036 12 O -0.199 6.199 13 C 0.090 3.910 14 C -0.225 4.225 15 C -0.102 4.102 16 C -0.158 4.158 17 C -0.186 4.186 18 O -0.344 6.344 19 Si 0.772 3.228 20 H -0.175 1.175 21 H -0.178 1.178 22 H -0.177 1.177 23 C -0.066 4.066 24 C -0.163 4.163 25 C -0.433 4.433 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.217 0.783 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.223 0.777 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.073 0.927 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.610 2.414 -0.175 5.206 hybrid contribution 1.790 0.263 -0.188 1.819 sum 6.399 2.677 -0.362 6.946 Atomic orbital electron populations 1.26038 1.19825 1.05224 1.04175 0.79188 0.67982 0.65523 0.64683 1.26119 1.06303 1.18560 1.04868 1.26385 1.06122 1.02685 1.14475 1.21188 1.02012 0.95812 0.94934 1.22622 0.95889 1.01513 0.90193 1.63006 1.52549 0.99704 0.93785 1.45368 1.12751 1.46046 1.28938 1.19834 0.85557 0.79559 0.83715 1.90770 1.19101 1.62425 1.63222 1.22386 0.89357 0.95686 0.96166 1.86168 1.35038 1.55723 1.42936 1.19072 0.94047 0.91191 0.86732 1.21146 0.96683 1.04896 0.99775 1.20826 0.98198 0.95646 0.95555 1.20219 0.94547 1.01238 0.99820 1.24901 1.13268 0.82919 0.97556 1.86520 1.61740 1.24070 1.62075 0.85707 0.75384 0.81140 0.80574 1.17486 1.17795 1.17703 1.20867 0.96794 0.95602 0.93323 1.20559 0.98646 0.98705 0.98425 1.28091 1.04633 0.92970 1.17615 0.91339 0.91315 0.90323 0.91219 0.90653 0.91046 0.90024 0.90683 0.90165 0.90770 0.90179 0.93626 0.78325 0.88769 0.88741 0.85182 0.85933 0.86480 0.77694 0.84548 0.84514 0.92713 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.11 8.65 101.05 0.87 0.99 16 2 Si 1.03 -2.62 11.99 -169.99 -2.04 -4.66 16 3 C -0.45 1.03 8.65 101.05 0.87 1.90 16 4 C -0.41 0.84 5.04 37.64 0.19 1.03 16 5 C -0.10 0.09 5.74 -26.44 -0.15 -0.06 16 6 C 0.03 -0.02 5.39 -4.22 -0.02 -0.04 16 7 N -0.27 -0.13 4.15 -56.85 -0.24 -0.37 16 8 N -0.58 0.21 4.72 31.22 0.15 0.36 16 9 C 0.53 1.15 8.01 -10.99 -0.09 1.06 16 10 O -0.49 -3.57 16.82 -14.35 -0.24 -3.81 16 11 C 0.04 -0.03 5.22 36.00 0.19 0.16 16 12 O -0.29 -0.85 9.67 -39.33 -0.38 -1.23 16 13 C 0.14 0.25 6.69 -39.22 -0.26 -0.01 16 14 C -0.21 -0.01 9.04 -39.43 -0.36 -0.36 16 15 C -0.08 0.00 8.66 -39.60 -0.34 -0.34 16 16 C -0.16 -0.05 5.35 -104.60 -0.56 -0.61 16 17 C -0.08 0.04 2.80 36.01 0.10 0.14 16 18 O -0.54 -0.13 12.83 -35.23 -0.45 -0.58 16 19 Si 0.95 -0.82 25.13 -169.99 -4.27 -5.09 16 20 H -0.25 0.08 7.11 56.52 0.40 0.48 16 21 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 22 H -0.25 0.22 7.04 56.52 0.40 0.62 16 23 C -0.05 -0.04 9.68 -39.60 -0.38 -0.42 16 24 C -0.14 -0.25 9.99 -39.43 -0.39 -0.64 16 25 C -0.26 0.34 4.85 60.52 0.29 0.63 16 26 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 27 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 28 H 0.08 0.11 7.96 -51.93 -0.41 -0.31 16 29 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 30 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 31 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 32 H 0.08 -0.18 7.99 -51.93 -0.42 -0.59 16 33 H 0.07 -0.19 7.99 -51.93 -0.42 -0.61 16 34 H 0.08 0.02 7.96 -51.93 -0.41 -0.39 16 35 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 36 H 0.08 -0.04 8.04 -51.93 -0.42 -0.46 16 37 H 0.05 -0.10 7.78 -51.93 -0.40 -0.50 16 38 H 0.38 -1.39 8.83 -185.15 -1.63 -3.02 16 39 H 0.09 -0.32 7.65 -51.93 -0.40 -0.71 16 40 H 0.09 -0.31 7.67 -51.93 -0.40 -0.70 16 41 H 0.13 -0.35 6.30 -52.49 -0.33 -0.68 16 42 H 0.12 -0.18 4.86 -52.49 -0.25 -0.43 16 43 H 0.12 -0.15 7.96 -51.93 -0.41 -0.57 16 44 H 0.38 -1.09 8.70 45.56 0.40 -0.69 16 45 H 0.14 -0.04 8.06 -52.49 -0.42 -0.47 16 46 H 0.14 0.17 8.06 -52.49 -0.42 -0.25 16 47 H 0.05 -0.14 7.92 -51.93 -0.41 -0.55 16 48 H 0.09 -0.06 7.99 -51.93 -0.41 -0.47 16 LS Contribution 390.01 15.07 5.88 5.88 Total: 0.00 -9.23 390.01 -10.11 -19.34 By element: Atomic # 1 Polarization: -4.77 SS G_CDS: -8.47 Total: -13.24 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.04 Total: 3.41 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -0.09 Total: -0.01 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -1.07 Total: -5.63 kcal Atomic # 14 Polarization: -3.44 SS G_CDS: -6.31 Total: -9.75 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -9.23 -10.11 -19.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_2989410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.773 kcal (2) G-P(sol) polarization free energy of solvation -9.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds