Wall clock time and date at job start Sun Mar 7 2021 09:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86300 * 110.05958 * 2 1 4 4 C 1.87522 * 110.00213 * 238.63794 * 2 1 3 5 5 C 1.53934 * 106.84776 * 284.49838 * 4 2 1 6 6 C 1.52627 * 109.31005 * 302.79521 * 5 4 2 7 7 N 1.46530 * 111.93705 * 76.54573 * 6 5 4 8 8 N 1.36601 * 111.12684 * 156.83797 * 7 6 5 9 9 C 1.34780 * 119.99731 * 244.31145 * 8 7 6 10 10 O 1.21280 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.50694 * 119.99837 * 180.02562 * 9 8 7 12 12 O 1.42897 * 109.47450 * 180.02562 * 11 9 8 13 13 C 1.35899 * 117.00376 * 180.02562 * 12 11 9 14 14 C 1.38729 * 120.05384 * 359.72092 * 13 12 11 15 15 C 1.38150 * 119.94034 * 179.74601 * 14 13 12 16 16 C 1.38262 * 120.05484 * 0.51185 * 15 14 13 17 17 C 1.50702 * 119.94153 * 179.74495 * 16 15 14 18 18 O 1.42904 * 109.46766 * 245.01924 * 17 16 15 19 19 Si 1.86298 * 109.47507 * 5.01772 * 17 16 15 20 20 H 1.48502 * 109.46728 * 60.00097 * 19 17 16 21 21 H 1.48499 * 109.47327 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47105 * 300.00236 * 19 17 16 23 23 C 1.38265 * 120.11754 * 359.76299 * 16 15 14 24 24 C 1.38150 * 120.04791 * 359.97438 * 23 16 15 25 25 C 1.47730 * 111.20480 * 281.03160 * 7 6 5 26 26 H 1.08998 * 109.47222 * 298.63822 * 1 2 3 27 27 H 1.09007 * 109.47203 * 58.63488 * 1 2 3 28 28 H 1.08996 * 109.47410 * 178.63624 * 1 2 3 29 29 H 1.09001 * 109.46718 * 181.35940 * 3 2 1 30 30 H 1.08994 * 109.47747 * 301.36054 * 3 2 1 31 31 H 1.09002 * 109.47179 * 61.36506 * 3 2 1 32 32 H 1.08998 * 109.98002 * 43.82883 * 4 2 1 33 33 H 1.09000 * 109.97611 * 165.07518 * 4 2 1 34 34 H 1.09000 * 109.50033 * 62.74607 * 5 4 2 35 35 H 1.08994 * 109.49732 * 182.81469 * 5 4 2 36 36 H 1.09002 * 108.99733 * 197.14019 * 6 5 4 37 37 H 1.08999 * 109.00124 * 315.90161 * 6 5 4 38 38 H 0.97001 * 120.00235 * 64.31553 * 8 7 6 39 39 H 1.08996 * 109.47235 * 299.99912 * 11 9 8 40 40 H 1.09007 * 109.47495 * 59.99564 * 11 9 8 41 41 H 1.07994 * 120.02972 * 0.02562 * 14 13 12 42 42 H 1.08001 * 119.96993 * 180.23143 * 15 14 13 43 43 H 1.09000 * 109.47211 * 125.02151 * 17 16 15 44 44 H 0.96692 * 114.00098 * 60.00299 * 18 17 16 45 45 H 1.07993 * 119.97538 * 179.97438 * 23 16 15 46 46 H 1.08002 * 120.02584 * 179.97438 * 24 23 16 47 47 H 1.09002 * 109.94931 * 300.84441 * 25 7 6 48 48 H 1.08998 * 109.94981 * 179.67542 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7500 0.0000 4 6 2.5045 -0.9171 -1.5047 5 6 2.3105 -2.4189 -1.2280 6 6 3.0398 -2.7933 0.0594 7 7 2.3057 -2.3587 1.2507 8 7 2.6560 -3.1006 2.3428 9 6 1.7414 -3.8864 2.9452 10 8 0.6074 -3.9343 2.5178 11 6 2.1277 -4.7044 4.1503 12 8 0.9950 -5.4482 4.6042 13 6 1.1744 -6.2433 5.6916 14 6 2.4165 -6.3108 6.3057 15 6 2.5949 -7.1158 7.4141 16 6 1.5394 -7.8619 7.9051 17 6 1.7383 -8.7436 9.1110 18 8 1.5724 -10.1117 8.7332 19 14 3.4549 -8.4904 9.7892 20 1 3.6273 -7.0686 10.1817 21 1 3.6511 -9.3597 10.9771 22 1 4.4549 -8.8415 8.7489 23 6 0.3019 -7.8007 7.2915 24 6 0.1171 -6.9931 6.1860 25 6 2.5043 -0.9169 1.5043 26 1 -0.3633 0.4925 0.9019 27 1 -0.3634 0.5349 -0.8775 28 1 -0.3634 -1.0273 -0.0245 29 1 3.5917 1.7388 -0.0244 30 1 2.1244 2.2748 -0.8774 31 1 2.1640 2.2602 0.9020 32 1 1.9374 -0.6250 -2.3885 33 1 3.5620 -0.6977 -1.6516 34 1 1.2475 -2.6346 -1.1199 35 1 2.7165 -2.9971 -2.0580 36 1 3.1636 -3.8757 0.0951 37 1 4.0240 -2.3249 0.0587 38 1 3.5628 -3.0619 2.6849 39 1 2.9292 -5.3922 3.8809 40 1 2.4697 -4.0415 4.9451 41 1 3.2422 -5.7311 5.9202 42 1 3.5607 -7.1658 7.8948 43 1 1.0043 -8.4859 9.8745 44 1 2.1939 -10.4108 8.0555 45 1 -0.5208 -8.3848 7.6767 46 1 -0.8496 -6.9459 5.7068 47 1 3.5646 -0.7065 1.6440 48 1 1.9456 -0.6147 2.3901 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_2989410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:17:49 Heat of formation + Delta-G solvation = -74.964055 kcal Electronic energy + Delta-G solvation = -26684.266008 eV Core-core repulsion = 22864.508067 eV Total energy + Delta-G solvation = -3819.757941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.59471 -40.80298 -39.26864 -38.32372 -37.09202 -34.98012 -32.59098 -31.99219 -31.65946 -29.38716 -29.17980 -28.35734 -27.52181 -26.23522 -24.84768 -23.87918 -22.42638 -21.86418 -21.70787 -19.54990 -18.91115 -18.19383 -17.90460 -17.50665 -17.00447 -16.56794 -16.51529 -16.03949 -15.63823 -15.40427 -15.24950 -15.03172 -14.84357 -14.74349 -14.44405 -14.37196 -13.97628 -13.81033 -13.78029 -13.58567 -13.50270 -13.44308 -13.19673 -13.11936 -12.97471 -12.26591 -12.17416 -12.08963 -12.04005 -12.03095 -11.97282 -11.57046 -11.33138 -10.81984 -10.78067 -10.38889 -10.36156 -10.21897 -10.05484 -9.69670 -9.24891 0.25618 0.29127 1.14023 1.21210 1.47555 1.47696 1.54563 1.76406 1.89491 1.94412 2.01845 2.46179 2.62057 2.64167 3.30018 3.56538 3.59556 3.71868 3.82504 3.93253 3.98545 4.01348 4.05109 4.16378 4.27388 4.41457 4.42999 4.53448 4.57854 4.67801 4.71460 4.73571 4.79355 4.80931 4.84430 4.85603 4.91848 4.95223 5.09245 5.14449 5.23023 5.30077 5.47195 5.48785 5.58421 5.65487 5.68330 5.80240 6.16160 6.20904 6.41676 6.74093 7.45798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.095 2.905 3 C -0.454 4.454 4 C -0.414 4.414 5 C -0.105 4.105 6 C 0.027 3.973 7 N -0.304 5.304 8 N -0.571 5.571 9 C 0.526 3.474 10 O -0.551 6.551 11 C 0.043 3.957 12 O -0.318 6.318 13 C 0.121 3.879 14 C -0.202 4.202 15 C -0.089 4.089 16 C -0.160 4.160 17 C -0.078 4.078 18 O -0.555 6.555 19 Si 0.984 3.016 20 H -0.255 1.255 21 H -0.279 1.279 22 H -0.247 1.247 23 C -0.055 4.055 24 C -0.165 4.165 25 C -0.269 4.269 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.399 0.601 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.161 0.839 42 H 0.141 0.859 43 H 0.121 0.879 44 H 0.388 0.612 45 H 0.141 0.859 46 H 0.129 0.871 47 H 0.075 0.925 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.575 3.116 -0.290 9.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.574 4.574 2 Si 1.283 2.717 3 C -0.562 4.562 4 C -0.500 4.500 5 C -0.143 4.143 6 C -0.101 4.101 7 N -0.121 5.121 8 N -0.317 5.317 9 C 0.312 3.688 10 O -0.426 6.426 11 C -0.036 4.036 12 O -0.231 6.231 13 C 0.076 3.924 14 C -0.220 4.220 15 C -0.107 4.107 16 C -0.161 4.161 17 C -0.188 4.188 18 O -0.362 6.362 19 Si 0.808 3.192 20 H -0.179 1.179 21 H -0.205 1.205 22 H -0.171 1.171 23 C -0.073 4.073 24 C -0.183 4.183 25 C -0.441 4.441 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.240 0.760 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.178 0.822 42 H 0.158 0.842 43 H 0.139 0.861 44 H 0.237 0.763 45 H 0.158 0.842 46 H 0.147 0.853 47 H 0.093 0.907 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.453 3.133 0.030 8.085 hybrid contribution 0.883 0.031 -0.253 0.919 sum 8.336 3.164 -0.224 8.919 Atomic orbital electron populations 1.26390 1.23384 1.03600 1.03987 0.78255 0.64701 0.65074 0.63633 1.26143 1.06959 1.18177 1.04926 1.26444 1.07114 1.01669 1.14778 1.21210 1.00844 0.96954 0.95339 1.22615 0.96609 1.01301 0.89551 1.62957 1.54071 1.00663 0.94428 1.45223 1.13261 1.44889 1.28337 1.20470 0.84918 0.79335 0.84075 1.90742 1.21779 1.64785 1.65313 1.22630 0.88964 0.96312 0.95677 1.86124 1.37125 1.56387 1.43511 1.19208 0.94848 0.91467 0.86913 1.21450 0.96664 1.04631 0.99268 1.21086 0.98755 0.95288 0.95566 1.20378 0.94444 1.01313 0.99956 1.25018 1.14072 0.82456 0.97282 1.86488 1.62581 1.24463 1.62702 0.85204 0.74669 0.80005 0.79272 1.17930 1.20509 1.17074 1.20955 0.97454 0.95664 0.93239 1.20674 0.98827 0.99684 0.99159 1.28238 1.05918 0.92006 1.17889 0.92006 0.91014 0.92634 0.90242 0.90545 0.91110 0.89895 0.89241 0.92210 0.90252 0.90865 0.91545 0.75991 0.85572 0.85680 0.82155 0.84186 0.86150 0.76269 0.84165 0.85337 0.90655 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -0.69 8.65 113.37 0.98 0.29 16 2 Si 1.09 -5.66 11.99 68.60 0.82 -4.84 16 3 C -0.45 2.63 8.65 113.37 0.98 3.62 16 4 C -0.41 1.96 5.04 72.30 0.36 2.32 16 5 C -0.10 0.15 5.74 30.79 0.18 0.32 16 6 C 0.03 -0.05 5.39 86.25 0.46 0.41 16 7 N -0.30 -0.39 4.15 -333.76 -1.39 -1.77 16 8 N -0.57 0.56 4.72 -173.53 -0.82 -0.26 16 9 C 0.53 2.68 8.01 87.65 0.70 3.39 16 10 O -0.55 -9.59 16.82 16.01 0.27 -9.32 16 11 C 0.04 -0.09 5.22 71.23 0.37 0.28 16 12 O -0.32 -2.18 9.67 -73.38 -0.71 -2.89 16 13 C 0.12 0.50 6.69 22.51 0.15 0.65 16 14 C -0.20 0.27 9.04 22.37 0.20 0.47 16 15 C -0.09 0.12 8.66 22.25 0.19 0.31 16 16 C -0.16 -0.07 5.35 -19.85 -0.11 -0.18 16 17 C -0.08 0.11 2.80 71.24 0.20 0.31 16 18 O -0.56 -0.23 12.83 -148.98 -1.91 -2.14 16 19 Si 0.98 -2.56 25.13 68.60 1.72 -0.83 16 20 H -0.26 0.49 7.11 99.48 0.71 1.20 16 21 H -0.28 -0.45 7.11 99.48 0.71 0.26 16 22 H -0.25 0.89 7.04 99.48 0.70 1.59 16 23 C -0.06 -0.14 9.68 22.26 0.22 0.07 16 24 C -0.16 -0.84 9.99 22.37 0.22 -0.61 16 25 C -0.27 0.81 4.85 127.53 0.62 1.43 16 26 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 27 H 0.07 0.01 7.96 -2.38 -0.02 -0.01 16 28 H 0.05 0.34 7.96 -2.39 -0.02 0.32 16 29 H 0.08 -0.57 7.96 -2.39 -0.02 -0.59 16 30 H 0.08 -0.42 7.96 -2.39 -0.02 -0.44 16 31 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 32 H 0.08 -0.39 7.99 -2.39 -0.02 -0.41 16 33 H 0.09 -0.64 7.99 -2.39 -0.02 -0.66 16 34 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 35 H 0.08 -0.22 8.14 -2.39 -0.02 -0.23 16 36 H 0.07 -0.06 8.04 -2.39 -0.02 -0.08 16 37 H 0.07 -0.42 7.78 -2.39 -0.02 -0.43 16 38 H 0.40 -3.57 8.83 -215.49 -1.90 -5.47 16 39 H 0.13 -1.11 7.65 -2.39 -0.02 -1.13 16 40 H 0.13 -1.07 7.67 -2.38 -0.02 -1.09 16 41 H 0.16 -1.34 6.30 -2.91 -0.02 -1.36 16 42 H 0.14 -0.72 4.86 -2.91 -0.01 -0.74 16 43 H 0.12 -0.31 7.96 -2.39 -0.02 -0.33 16 44 H 0.39 -2.35 8.70 -74.06 -0.64 -2.99 16 45 H 0.14 0.10 8.06 -2.91 -0.02 0.08 16 46 H 0.13 0.70 8.06 -2.91 -0.02 0.67 16 47 H 0.08 -0.55 7.92 -2.39 -0.02 -0.57 16 48 H 0.08 -0.08 7.99 -2.39 -0.02 -0.09 16 Total: 0.00 -24.50 390.01 2.89 -21.60 By element: Atomic # 1 Polarization: -11.80 SS G_CDS: -0.83 Total: -12.64 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 5.74 Total: 13.08 kcal Atomic # 7 Polarization: 0.18 SS G_CDS: -2.20 Total: -2.03 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -2.35 Total: -14.35 kcal Atomic # 14 Polarization: -8.22 SS G_CDS: 2.55 Total: -5.67 kcal Total: -24.50 2.89 -21.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_2989410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.360 kcal (2) G-P(sol) polarization free energy of solvation -24.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds