Wall clock time and date at job start Sun Mar 7 2021 09:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86296 * 110.06123 * 2 1 4 4 C 1.87519 * 110.00190 * 238.63626 * 2 1 3 5 5 C 1.53935 * 106.84928 * 196.90070 * 4 2 1 6 6 C 1.52619 * 109.31099 * 57.20524 * 5 4 2 7 7 N 1.46352 * 111.89313 * 283.47848 * 6 5 4 8 8 N 1.36599 * 111.00244 * 203.19693 * 7 6 5 9 9 C 1.34776 * 120.00125 * 111.10288 * 8 7 6 10 10 O 1.21283 * 119.99926 * 354.98967 * 9 8 7 11 11 C 1.50702 * 119.99747 * 174.99762 * 9 8 7 12 12 C 1.53004 * 109.46764 * 179.97438 * 11 9 8 13 13 O 1.42904 * 109.46985 * 179.97438 * 12 11 9 14 14 C 1.35894 * 116.99869 * 180.02562 * 13 12 11 15 15 C 1.38732 * 120.05709 * 359.72433 * 14 13 12 16 16 C 1.38147 * 119.94597 * 179.74634 * 15 14 13 17 17 C 1.38269 * 120.05090 * 0.50807 * 16 15 14 18 18 C 1.50699 * 119.94148 * 179.74787 * 17 16 15 19 19 O 1.42908 * 109.47037 * 245.01890 * 18 17 16 20 20 Si 1.86296 * 109.47374 * 5.02105 * 18 17 16 21 21 H 1.48500 * 109.47445 * 60.00072 * 20 18 17 22 22 H 1.48503 * 109.47310 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47033 * 299.99895 * 20 18 17 24 24 C 1.38263 * 120.11422 * 359.76557 * 17 16 15 25 25 C 1.38147 * 120.05675 * 359.97438 * 24 17 16 26 26 C 1.47726 * 111.30730 * 79.02089 * 7 6 5 27 27 H 1.09001 * 109.47116 * 298.63020 * 1 2 3 28 28 H 1.08995 * 109.47685 * 58.63592 * 1 2 3 29 29 H 1.09001 * 109.47131 * 178.63662 * 1 2 3 30 30 H 1.09000 * 109.47201 * 181.36206 * 3 2 1 31 31 H 1.08995 * 109.47595 * 301.36314 * 3 2 1 32 32 H 1.09007 * 109.46719 * 61.36579 * 3 2 1 33 33 H 1.08998 * 109.98084 * 316.23409 * 4 2 1 34 34 H 1.09003 * 109.97684 * 77.47761 * 4 2 1 35 35 H 1.09002 * 109.49755 * 177.16017 * 5 4 2 36 36 H 1.08995 * 109.49654 * 297.22252 * 5 4 2 37 37 H 1.08999 * 108.99964 * 162.85444 * 6 5 4 38 38 H 1.08999 * 108.99650 * 44.10159 * 6 5 4 39 39 H 0.97001 * 119.99658 * 291.10063 * 8 7 6 40 40 H 1.08994 * 109.47618 * 59.99636 * 11 9 8 41 41 H 1.09006 * 109.47115 * 299.98982 * 11 9 8 42 42 H 1.09001 * 109.47039 * 59.99842 * 12 11 9 43 43 H 1.08999 * 109.47223 * 299.99659 * 12 11 9 44 44 H 1.07994 * 120.02852 * 359.97438 * 15 14 13 45 45 H 1.07998 * 119.97591 * 180.23284 * 16 15 14 46 46 H 1.08999 * 109.47403 * 125.01973 * 18 17 16 47 47 H 0.96699 * 113.99394 * 60.00372 * 19 18 17 48 48 H 1.08006 * 119.97276 * 179.97438 * 24 17 16 49 49 H 1.07999 * 120.02933 * 179.97438 * 25 24 17 50 50 H 1.08999 * 109.94893 * 59.06072 * 26 7 6 51 51 H 1.08994 * 109.95131 * 180.23154 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7499 0.0000 4 6 2.5044 -0.9171 -1.5046 5 6 3.9816 -1.2501 -1.2280 6 6 4.0831 -2.0636 0.0593 7 7 3.9262 -1.2251 1.2485 8 7 4.5043 -1.8096 2.3394 9 6 5.6122 -1.2700 2.8853 10 8 6.1482 -0.3198 2.3554 11 6 6.1851 -1.8476 4.1539 12 6 7.4320 -1.0575 4.5563 13 8 7.9749 -1.6047 5.7596 14 6 9.0930 -1.0135 6.2567 15 6 9.6593 0.0675 5.5968 16 6 10.7928 0.6701 6.1070 17 6 11.3690 0.1901 7.2687 18 6 12.6088 0.8458 7.8200 19 8 13.6989 -0.0769 7.7679 20 14 13.0202 2.3510 6.8023 21 1 11.8875 3.3099 6.8564 22 1 14.2423 2.9968 7.3452 23 1 13.2591 1.9461 5.3937 24 6 10.8098 -0.8907 7.9251 25 6 9.6732 -1.4934 7.4219 26 6 2.5043 -0.9170 1.5043 27 1 -0.3633 0.4924 0.9020 28 1 -0.3634 0.5348 -0.8774 29 1 -0.3633 -1.0274 -0.0245 30 1 3.5917 1.7388 -0.0244 31 1 2.1243 2.2747 -0.8774 32 1 2.1640 2.2601 0.9021 33 1 1.9366 -1.8360 -1.6507 34 1 2.4231 -0.2848 -2.3888 35 1 4.3854 -1.8302 -2.0578 36 1 4.5489 -0.3257 -1.1204 37 1 5.0573 -2.5513 0.0951 38 1 3.3055 -2.8274 0.0586 39 1 4.1174 -2.6130 2.7213 40 1 6.4540 -2.8909 3.9891 41 1 5.4425 -1.7850 4.9494 42 1 7.1634 -0.0140 4.7210 43 1 8.1745 -1.1204 3.7608 44 1 9.2122 0.4399 4.6870 45 1 11.2319 1.5140 5.5958 46 1 12.4336 1.1431 8.8539 47 1 13.9114 -0.3846 6.8762 48 1 11.2620 -1.2640 8.8322 49 1 9.2370 -2.3378 7.9348 50 1 1.9429 -1.8408 1.6439 51 1 2.4133 -0.2893 2.3907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_4549602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:18:03 Heat of formation + Delta-G solvation = -88.684262 kcal Electronic energy + Delta-G solvation = -28361.350266 eV Core-core repulsion = 24385.459753 eV Total energy + Delta-G solvation = -3975.890513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.36480 -40.90330 -39.23136 -38.49224 -37.11972 -34.97461 -33.46313 -32.12166 -31.66725 -31.04007 -29.46733 -28.46799 -27.67121 -26.67071 -25.80020 -24.50277 -23.34224 -22.17512 -21.88974 -21.45575 -19.51955 -18.54804 -18.36136 -17.68737 -17.49080 -17.03389 -16.68782 -16.42848 -16.02258 -15.74363 -15.55181 -15.31858 -15.06950 -14.97126 -14.76601 -14.48006 -14.38530 -14.32605 -14.14231 -13.91321 -13.86309 -13.64468 -13.53239 -13.32638 -13.21044 -13.07246 -12.86691 -12.83814 -12.21409 -12.13426 -12.08069 -12.06658 -12.00129 -11.76203 -11.48652 -11.36705 -10.93745 -10.74310 -10.48568 -10.35943 -10.26823 -9.96588 -9.73691 -9.13533 0.35563 0.38442 1.20140 1.23321 1.46379 1.55205 1.60318 1.67062 1.74410 1.87625 1.95015 2.33740 2.48089 2.73412 3.33073 3.50442 3.53327 3.73319 3.82289 3.85096 3.88083 3.90600 4.00438 4.08209 4.26708 4.29272 4.33039 4.42136 4.44959 4.55541 4.59365 4.59482 4.60226 4.61172 4.64518 4.66488 4.73153 4.79376 4.80817 4.86444 4.98434 5.01602 5.19579 5.24572 5.32238 5.35419 5.37571 5.55969 5.62345 5.70047 5.77812 6.24188 6.29874 6.40650 6.59431 7.47151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.034 2.966 3 C -0.444 4.444 4 C -0.411 4.411 5 C -0.101 4.101 6 C 0.025 3.975 7 N -0.277 5.277 8 N -0.586 5.586 9 C 0.535 3.465 10 O -0.513 6.513 11 C -0.138 4.138 12 C 0.074 3.926 13 O -0.316 6.316 14 C 0.138 3.862 15 C -0.202 4.202 16 C -0.084 4.084 17 C -0.159 4.159 18 C -0.075 4.075 19 O -0.540 6.540 20 Si 0.947 3.053 21 H -0.251 1.251 22 H -0.254 1.254 23 H -0.252 1.252 24 C -0.051 4.051 25 C -0.151 4.151 26 C -0.260 4.260 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.380 0.620 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.134 0.866 45 H 0.123 0.877 46 H 0.117 0.883 47 H 0.376 0.624 48 H 0.135 0.865 49 H 0.134 0.866 50 H 0.054 0.946 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 -2.501 -1.241 4.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.227 2.773 3 C -0.552 4.552 4 C -0.497 4.497 5 C -0.139 4.139 6 C -0.102 4.102 7 N -0.092 5.092 8 N -0.331 5.331 9 C 0.321 3.679 10 O -0.386 6.386 11 C -0.179 4.179 12 C -0.001 4.001 13 O -0.230 6.230 14 C 0.092 3.908 15 C -0.220 4.220 16 C -0.102 4.102 17 C -0.160 4.160 18 C -0.185 4.185 19 O -0.345 6.345 20 Si 0.770 3.230 21 H -0.174 1.174 22 H -0.178 1.178 23 H -0.176 1.176 24 C -0.069 4.069 25 C -0.169 4.169 26 C -0.433 4.433 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.218 0.782 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.152 0.848 45 H 0.140 0.860 46 H 0.135 0.865 47 H 0.223 0.777 48 H 0.153 0.847 49 H 0.152 0.848 50 H 0.073 0.927 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.280 -0.724 -1.429 3.651 hybrid contribution -0.963 -1.659 -0.149 1.924 sum -4.244 -2.383 -1.578 5.117 Atomic orbital electron populations 1.26122 1.20311 1.04591 1.04854 0.79175 0.65821 0.67603 0.64732 1.26035 1.07268 1.17749 1.04175 1.26391 1.00750 1.08104 1.14459 1.21181 0.96548 1.01160 0.95028 1.22589 1.02107 0.95196 0.90355 1.63015 1.13934 1.38187 0.94110 1.45588 1.29163 1.29465 1.28858 1.20152 0.79371 0.83483 0.84920 1.90734 1.58611 1.26957 1.62299 1.21434 0.98170 1.02131 0.96182 1.22417 0.94702 0.97650 0.85357 1.85968 1.39753 1.56117 1.41156 1.18987 0.86369 0.92052 0.93350 1.21256 0.99390 0.98763 1.02638 1.20855 0.95378 0.98850 0.95118 1.20199 0.99297 0.99388 0.97082 1.24881 0.85301 1.00476 1.07882 1.86512 1.50068 1.64042 1.33863 0.85729 0.81183 0.77088 0.79001 1.17421 1.17837 1.17628 1.20830 0.93329 0.93734 0.98967 1.20514 0.97741 1.02880 0.95795 1.28073 0.90576 1.07115 1.17506 0.91049 0.90666 0.91200 0.90381 0.91299 0.91362 0.90704 0.90066 0.90881 0.90227 0.90275 0.93779 0.78155 0.87542 0.87416 0.90756 0.90794 0.84833 0.85978 0.86536 0.77694 0.84732 0.84835 0.92705 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.07 8.65 101.05 0.87 1.94 16 2 Si 1.03 -2.79 11.99 -169.99 -2.04 -4.83 16 3 C -0.44 0.28 8.65 101.05 0.87 1.16 16 4 C -0.41 0.83 5.04 37.64 0.19 1.02 16 5 C -0.10 0.08 5.74 -26.44 -0.15 -0.07 16 6 C 0.03 -0.02 5.38 -4.32 -0.02 -0.04 16 7 N -0.28 -0.09 4.15 -56.97 -0.24 -0.32 16 8 N -0.59 0.28 4.71 31.22 0.15 0.43 16 9 C 0.53 0.59 7.93 -10.98 -0.09 0.50 16 10 O -0.51 -2.69 16.31 5.56 0.09 -2.60 16 11 C -0.14 0.22 6.07 -27.88 -0.17 0.05 16 12 C 0.07 0.03 4.03 37.16 0.15 0.18 16 13 O -0.32 -0.55 10.14 -19.41 -0.20 -0.75 16 14 C 0.14 0.30 6.69 -39.22 -0.26 0.04 16 15 C -0.20 -0.36 9.04 -39.43 -0.36 -0.72 16 16 C -0.08 -0.12 8.66 -39.60 -0.34 -0.46 16 17 C -0.16 -0.17 5.35 -104.60 -0.56 -0.73 16 18 C -0.07 -0.01 2.80 36.01 0.10 0.09 16 19 O -0.54 -0.41 12.83 -35.23 -0.45 -0.86 16 20 Si 0.95 0.06 25.13 -169.99 -4.27 -4.21 16 21 H -0.25 -0.20 7.11 56.52 0.40 0.21 16 22 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 23 H -0.25 -0.07 7.04 56.52 0.40 0.33 16 24 C -0.05 -0.05 9.68 -39.61 -0.38 -0.44 16 25 C -0.15 -0.23 9.99 -39.43 -0.39 -0.62 16 26 C -0.26 0.38 4.85 60.52 0.29 0.68 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 30 H 0.08 0.07 7.96 -51.93 -0.41 -0.35 16 31 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 32 H 0.07 -0.03 7.96 -51.92 -0.41 -0.45 16 33 H 0.07 -0.18 7.99 -51.93 -0.42 -0.60 16 34 H 0.08 -0.17 7.99 -51.93 -0.42 -0.59 16 35 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 36 H 0.08 0.02 7.96 -51.93 -0.41 -0.39 16 37 H 0.08 0.00 8.03 -51.93 -0.42 -0.42 16 38 H 0.04 -0.08 7.78 -51.93 -0.40 -0.48 16 39 H 0.38 -1.22 8.83 -185.15 -1.63 -2.86 16 40 H 0.11 -0.34 8.14 -51.93 -0.42 -0.76 16 41 H 0.11 -0.32 8.14 -51.93 -0.42 -0.74 16 42 H 0.07 0.06 7.63 -51.93 -0.40 -0.33 16 43 H 0.07 0.05 7.61 -51.93 -0.40 -0.34 16 44 H 0.13 0.11 6.30 -52.49 -0.33 -0.22 16 45 H 0.12 0.03 4.86 -52.49 -0.25 -0.23 16 46 H 0.12 -0.09 7.96 -51.93 -0.41 -0.50 16 47 H 0.38 -0.86 8.70 45.56 0.40 -0.46 16 48 H 0.13 -0.02 8.06 -52.48 -0.42 -0.45 16 49 H 0.13 0.03 8.06 -52.49 -0.42 -0.40 16 50 H 0.05 -0.14 7.92 -51.93 -0.41 -0.55 16 51 H 0.09 -0.10 7.99 -51.93 -0.42 -0.51 16 LS Contribution 410.94 15.07 6.19 6.19 Total: 0.00 -7.86 410.94 -10.33 -18.19 By element: Atomic # 1 Polarization: -4.50 SS G_CDS: -9.31 Total: -13.82 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.25 Total: 2.58 kcal Atomic # 7 Polarization: 0.20 SS G_CDS: -0.09 Total: 0.11 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.56 Total: -4.21 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: -6.31 Total: -9.04 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -7.86 -10.33 -18.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_4549602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.498 kcal (2) G-P(sol) polarization free energy of solvation -7.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds