Wall clock time and date at job start Sun Mar 7 2021 09:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86296 * 110.06123 * 2 1 4 4 C 1.87519 * 110.00190 * 238.63626 * 2 1 3 5 5 C 1.53935 * 106.84928 * 196.90070 * 4 2 1 6 6 C 1.52619 * 109.31099 * 57.20524 * 5 4 2 7 7 N 1.46352 * 111.89313 * 283.47848 * 6 5 4 8 8 N 1.36599 * 111.00244 * 203.19693 * 7 6 5 9 9 C 1.34776 * 120.00125 * 111.10288 * 8 7 6 10 10 O 1.21283 * 119.99926 * 354.98967 * 9 8 7 11 11 C 1.50702 * 119.99747 * 174.99762 * 9 8 7 12 12 C 1.53004 * 109.46764 * 179.97438 * 11 9 8 13 13 O 1.42904 * 109.46985 * 179.97438 * 12 11 9 14 14 C 1.35894 * 116.99869 * 180.02562 * 13 12 11 15 15 C 1.38732 * 120.05709 * 359.72433 * 14 13 12 16 16 C 1.38147 * 119.94597 * 179.74634 * 15 14 13 17 17 C 1.38269 * 120.05090 * 0.50807 * 16 15 14 18 18 C 1.50699 * 119.94148 * 179.74787 * 17 16 15 19 19 O 1.42908 * 109.47037 * 245.01890 * 18 17 16 20 20 Si 1.86296 * 109.47374 * 5.02105 * 18 17 16 21 21 H 1.48500 * 109.47445 * 60.00072 * 20 18 17 22 22 H 1.48503 * 109.47310 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47033 * 299.99895 * 20 18 17 24 24 C 1.38263 * 120.11422 * 359.76557 * 17 16 15 25 25 C 1.38147 * 120.05675 * 359.97438 * 24 17 16 26 26 C 1.47726 * 111.30730 * 79.02089 * 7 6 5 27 27 H 1.09001 * 109.47116 * 298.63020 * 1 2 3 28 28 H 1.08995 * 109.47685 * 58.63592 * 1 2 3 29 29 H 1.09001 * 109.47131 * 178.63662 * 1 2 3 30 30 H 1.09000 * 109.47201 * 181.36206 * 3 2 1 31 31 H 1.08995 * 109.47595 * 301.36314 * 3 2 1 32 32 H 1.09007 * 109.46719 * 61.36579 * 3 2 1 33 33 H 1.08998 * 109.98084 * 316.23409 * 4 2 1 34 34 H 1.09003 * 109.97684 * 77.47761 * 4 2 1 35 35 H 1.09002 * 109.49755 * 177.16017 * 5 4 2 36 36 H 1.08995 * 109.49654 * 297.22252 * 5 4 2 37 37 H 1.08999 * 108.99964 * 162.85444 * 6 5 4 38 38 H 1.08999 * 108.99650 * 44.10159 * 6 5 4 39 39 H 0.97001 * 119.99658 * 291.10063 * 8 7 6 40 40 H 1.08994 * 109.47618 * 59.99636 * 11 9 8 41 41 H 1.09006 * 109.47115 * 299.98982 * 11 9 8 42 42 H 1.09001 * 109.47039 * 59.99842 * 12 11 9 43 43 H 1.08999 * 109.47223 * 299.99659 * 12 11 9 44 44 H 1.07994 * 120.02852 * 359.97438 * 15 14 13 45 45 H 1.07998 * 119.97591 * 180.23284 * 16 15 14 46 46 H 1.08999 * 109.47403 * 125.01973 * 18 17 16 47 47 H 0.96699 * 113.99394 * 60.00372 * 19 18 17 48 48 H 1.08006 * 119.97276 * 179.97438 * 24 17 16 49 49 H 1.07999 * 120.02933 * 179.97438 * 25 24 17 50 50 H 1.08999 * 109.94893 * 59.06072 * 26 7 6 51 51 H 1.08994 * 109.95131 * 180.23154 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7499 0.0000 4 6 2.5044 -0.9171 -1.5046 5 6 3.9816 -1.2501 -1.2280 6 6 4.0831 -2.0636 0.0593 7 7 3.9262 -1.2251 1.2485 8 7 4.5043 -1.8096 2.3394 9 6 5.6122 -1.2700 2.8853 10 8 6.1482 -0.3198 2.3554 11 6 6.1851 -1.8476 4.1539 12 6 7.4320 -1.0575 4.5563 13 8 7.9749 -1.6047 5.7596 14 6 9.0930 -1.0135 6.2567 15 6 9.6593 0.0675 5.5968 16 6 10.7928 0.6701 6.1070 17 6 11.3690 0.1901 7.2687 18 6 12.6088 0.8458 7.8200 19 8 13.6989 -0.0769 7.7679 20 14 13.0202 2.3510 6.8023 21 1 11.8875 3.3099 6.8564 22 1 14.2423 2.9968 7.3452 23 1 13.2591 1.9461 5.3937 24 6 10.8098 -0.8907 7.9251 25 6 9.6732 -1.4934 7.4219 26 6 2.5043 -0.9170 1.5043 27 1 -0.3633 0.4924 0.9020 28 1 -0.3634 0.5348 -0.8774 29 1 -0.3633 -1.0274 -0.0245 30 1 3.5917 1.7388 -0.0244 31 1 2.1243 2.2747 -0.8774 32 1 2.1640 2.2601 0.9021 33 1 1.9366 -1.8360 -1.6507 34 1 2.4231 -0.2848 -2.3888 35 1 4.3854 -1.8302 -2.0578 36 1 4.5489 -0.3257 -1.1204 37 1 5.0573 -2.5513 0.0951 38 1 3.3055 -2.8274 0.0586 39 1 4.1174 -2.6130 2.7213 40 1 6.4540 -2.8909 3.9891 41 1 5.4425 -1.7850 4.9494 42 1 7.1634 -0.0140 4.7210 43 1 8.1745 -1.1204 3.7608 44 1 9.2122 0.4399 4.6870 45 1 11.2319 1.5140 5.5958 46 1 12.4336 1.1431 8.8539 47 1 13.9114 -0.3846 6.8762 48 1 11.2620 -1.2640 8.8322 49 1 9.2370 -2.3378 7.9348 50 1 1.9429 -1.8408 1.6439 51 1 2.4133 -0.2893 2.3907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_4549602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:18:02 Heat of formation + Delta-G solvation = -84.021793 kcal Electronic energy + Delta-G solvation = -28361.148086 eV Core-core repulsion = 24385.459753 eV Total energy + Delta-G solvation = -3975.688333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.178 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.43162 -40.95372 -39.27517 -38.53609 -37.16132 -34.95182 -33.48107 -32.17709 -31.70845 -31.02871 -29.32697 -28.35515 -27.55107 -26.69367 -25.81849 -24.47223 -23.37803 -22.22988 -21.82549 -21.48839 -19.58488 -18.51563 -18.39260 -17.73885 -17.51885 -17.10384 -16.67220 -16.46910 -16.04162 -15.79374 -15.57989 -15.30157 -15.11371 -14.92196 -14.73060 -14.44570 -14.41226 -14.34845 -13.97982 -13.92603 -13.80670 -13.57996 -13.50331 -13.19518 -13.12339 -12.98814 -12.86893 -12.83892 -12.26706 -12.15165 -12.04188 -12.03693 -11.98143 -11.80226 -11.54900 -11.37025 -10.81724 -10.75705 -10.40794 -10.38652 -10.21498 -10.05438 -9.65242 -9.23097 0.26067 0.29175 1.18723 1.32247 1.43299 1.51018 1.57567 1.79029 1.89883 1.90063 2.01633 2.37286 2.61679 2.64514 3.41613 3.52814 3.57530 3.69157 3.82325 3.87242 3.88443 3.97616 4.01695 4.17282 4.23206 4.32205 4.42550 4.43733 4.52465 4.59214 4.65333 4.66999 4.67887 4.74108 4.78058 4.80071 4.81263 4.84724 4.85296 4.92168 4.95645 5.08510 5.16864 5.26496 5.28982 5.46562 5.48328 5.58439 5.65665 5.71463 5.80325 6.24641 6.28926 6.37588 6.71365 7.49949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.096 2.904 3 C -0.465 4.465 4 C -0.417 4.417 5 C -0.104 4.104 6 C 0.026 3.974 7 N -0.302 5.302 8 N -0.577 5.577 9 C 0.533 3.467 10 O -0.564 6.564 11 C -0.127 4.127 12 C 0.074 3.926 13 O -0.319 6.319 14 C 0.123 3.877 15 C -0.212 4.212 16 C -0.094 4.094 17 C -0.161 4.161 18 C -0.070 4.070 19 O -0.552 6.552 20 Si 0.976 3.024 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.256 1.256 24 C -0.054 4.054 25 C -0.156 4.156 26 C -0.269 4.269 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.396 0.604 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.135 0.865 45 H 0.130 0.870 46 H 0.127 0.873 47 H 0.388 0.612 48 H 0.148 0.852 49 H 0.145 0.855 50 H 0.072 0.928 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.107 -3.901 -0.846 6.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.285 2.715 3 C -0.571 4.571 4 C -0.502 4.502 5 C -0.142 4.142 6 C -0.101 4.101 7 N -0.119 5.119 8 N -0.322 5.322 9 C 0.321 3.679 10 O -0.440 6.440 11 C -0.167 4.167 12 C -0.001 4.001 13 O -0.233 6.233 14 C 0.077 3.923 15 C -0.230 4.230 16 C -0.112 4.112 17 C -0.162 4.162 18 C -0.181 4.181 19 O -0.359 6.359 20 Si 0.801 3.199 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.180 1.180 24 C -0.072 4.072 25 C -0.175 4.175 26 C -0.441 4.441 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.237 0.763 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.153 0.847 45 H 0.147 0.853 46 H 0.144 0.856 47 H 0.237 0.763 48 H 0.166 0.834 49 H 0.163 0.837 50 H 0.090 0.910 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.372 -2.143 -1.035 4.978 hybrid contribution -0.606 -1.191 -0.287 1.367 sum -4.978 -3.334 -1.321 6.136 Atomic orbital electron populations 1.26160 1.20093 1.05124 1.04951 0.78223 0.65071 0.64761 0.63454 1.26344 1.06022 1.20649 1.04095 1.26478 0.99880 1.08855 1.15012 1.21194 0.97361 1.00422 0.95258 1.22571 1.02167 0.95369 0.90008 1.62986 1.15085 1.39183 0.94606 1.45503 1.28578 1.29675 1.28461 1.20613 0.79272 0.82771 0.85283 1.90715 1.60172 1.29279 1.63864 1.21384 0.97530 1.02567 0.95255 1.22417 0.95332 0.97622 0.84768 1.85948 1.39688 1.56216 1.41479 1.19188 0.86774 0.92437 0.93876 1.21374 0.99733 0.99012 1.02913 1.21017 0.95443 0.99212 0.95492 1.20342 0.99526 0.99407 0.96879 1.24872 0.84744 1.00056 1.08398 1.86481 1.50122 1.64133 1.35175 0.85317 0.79581 0.76456 0.78523 1.18576 1.19850 1.17983 1.21029 0.93188 0.93602 0.99360 1.20723 0.97881 1.03229 0.95632 1.28239 0.89779 1.08066 1.17997 0.91020 0.90566 0.90424 0.92453 0.91036 0.91788 0.89535 0.89893 0.90570 0.92003 0.91250 0.92080 0.76291 0.85350 0.85446 0.91741 0.91622 0.84700 0.85262 0.85566 0.76304 0.83426 0.83697 0.91002 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.69 8.65 113.37 0.98 3.67 16 2 Si 1.10 -6.11 11.99 68.60 0.82 -5.29 16 3 C -0.47 -0.09 8.65 113.37 0.98 0.89 16 4 C -0.42 1.86 5.04 72.30 0.36 2.23 16 5 C -0.10 0.11 5.74 30.78 0.18 0.29 16 6 C 0.03 -0.03 5.38 86.28 0.46 0.43 16 7 N -0.30 -0.29 4.15 -334.17 -1.39 -1.68 16 8 N -0.58 0.57 4.71 -173.53 -0.82 -0.25 16 9 C 0.53 1.56 7.93 87.66 0.70 2.25 16 10 O -0.56 -7.08 16.31 -3.04 -0.05 -7.13 16 11 C -0.13 0.42 6.07 29.85 0.18 0.60 16 12 C 0.07 0.14 4.03 71.98 0.29 0.43 16 13 O -0.32 -1.25 10.14 -92.36 -0.94 -2.19 16 14 C 0.12 0.62 6.69 22.51 0.15 0.77 16 15 C -0.21 -1.01 9.04 22.37 0.20 -0.81 16 16 C -0.09 -0.33 8.66 22.26 0.19 -0.13 16 17 C -0.16 -0.36 5.35 -19.85 -0.11 -0.47 16 18 C -0.07 0.00 2.80 71.24 0.20 0.20 16 19 O -0.55 -0.61 12.83 -148.98 -1.91 -2.52 16 20 Si 0.98 0.50 25.13 68.60 1.72 2.22 16 21 H -0.26 -0.57 7.11 99.48 0.71 0.14 16 22 H -0.27 -0.98 7.11 99.48 0.71 -0.28 16 23 H -0.26 -0.22 7.04 99.48 0.70 0.48 16 24 C -0.05 -0.10 9.68 22.25 0.22 0.11 16 25 C -0.16 -0.47 9.99 22.37 0.22 -0.25 16 26 C -0.27 0.91 4.85 127.53 0.62 1.52 16 27 H 0.07 -0.40 7.96 -2.39 -0.02 -0.41 16 28 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 29 H 0.08 -0.54 7.96 -2.39 -0.02 -0.56 16 30 H 0.06 0.25 7.96 -2.39 -0.02 0.23 16 31 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 32 H 0.06 0.04 7.96 -2.38 -0.02 0.02 16 33 H 0.09 -0.55 7.99 -2.39 -0.02 -0.57 16 34 H 0.08 -0.38 7.99 -2.39 -0.02 -0.40 16 35 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 37 H 0.07 0.04 8.03 -2.39 -0.02 0.02 16 38 H 0.06 -0.29 7.78 -2.39 -0.02 -0.31 16 39 H 0.40 -2.94 8.83 -215.50 -1.90 -4.84 16 40 H 0.13 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H 0.13 -0.90 8.14 -2.38 -0.02 -0.92 16 42 H 0.06 0.23 7.63 -2.39 -0.02 0.21 16 43 H 0.07 0.21 7.61 -2.39 -0.02 0.20 16 44 H 0.14 0.49 6.30 -2.91 -0.02 0.47 16 45 H 0.13 0.15 4.86 -2.91 -0.01 0.14 16 46 H 0.13 -0.26 7.96 -2.39 -0.02 -0.28 16 47 H 0.39 -1.88 8.70 -74.06 -0.64 -2.53 16 48 H 0.15 -0.17 8.06 -2.91 -0.02 -0.19 16 49 H 0.15 0.00 8.06 -2.91 -0.02 -0.02 16 50 H 0.07 -0.49 7.92 -2.39 -0.02 -0.51 16 51 H 0.09 -0.18 7.99 -2.39 -0.02 -0.20 16 Total: 0.00 -19.17 410.94 2.40 -16.77 By element: Atomic # 1 Polarization: -10.81 SS G_CDS: -0.87 Total: -11.69 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 5.83 Total: 11.75 kcal Atomic # 7 Polarization: 0.28 SS G_CDS: -2.20 Total: -1.93 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -2.90 Total: -11.84 kcal Atomic # 14 Polarization: -5.61 SS G_CDS: 2.55 Total: -3.07 kcal Total: -19.17 2.40 -16.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_4549602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.255 kcal (2) G-P(sol) polarization free energy of solvation -19.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds