Wall clock time and date at job start Sun Mar 7 2021 09:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86302 * 110.05882 * 2 1 4 4 C 1.87772 * 110.10326 * 238.56976 * 2 1 3 5 5 C 1.53930 * 106.88145 * 196.93423 * 4 2 1 6 6 C 1.52620 * 109.31054 * 57.20377 * 5 4 2 7 7 N 1.46354 * 111.89365 * 283.47909 * 6 5 4 8 8 N 1.36597 * 111.00439 * 203.19512 * 7 6 5 9 9 C 1.34777 * 120.00136 * 115.64904 * 8 7 6 10 10 O 1.21279 * 120.00092 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00055 * 180.02562 * 9 8 7 12 12 C 1.53000 * 109.47133 * 179.97438 * 11 9 8 13 13 O 1.42898 * 109.47494 * 179.97438 * 12 11 9 14 14 C 1.35898 * 117.00581 * 180.02562 * 13 12 11 15 15 C 1.38716 * 120.05374 * 359.72796 * 14 13 12 16 16 C 1.38165 * 119.94483 * 179.71957 * 15 14 13 17 17 C 1.38245 * 120.05112 * 0.58077 * 16 15 14 18 18 C 1.38281 * 120.11444 * 359.66836 * 17 16 15 19 19 C 1.50706 * 119.97363 * 180.02562 * 18 17 16 20 20 O 1.42896 * 109.47257 * 245.02724 * 19 18 17 21 21 Si 1.86302 * 109.46841 * 5.03063 * 19 18 17 22 22 H 1.48496 * 109.47403 * 59.99776 * 21 19 18 23 23 H 1.48503 * 109.46673 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46795 * 299.99512 * 21 19 18 25 25 C 1.38124 * 120.05761 * 0.05801 * 18 17 16 26 26 C 1.47726 * 111.30712 * 79.01876 * 7 6 5 27 27 H 1.08997 * 109.46901 * 298.63756 * 1 2 3 28 28 H 1.09005 * 109.46732 * 58.63878 * 1 2 3 29 29 H 1.08995 * 109.46671 * 178.63368 * 1 2 3 30 30 H 1.09000 * 109.47456 * 181.36346 * 3 2 1 31 31 H 1.09002 * 109.47079 * 301.36550 * 3 2 1 32 32 H 1.08997 * 109.47362 * 61.36560 * 3 2 1 33 33 H 1.09006 * 109.96179 * 77.59600 * 4 2 1 34 34 H 1.08997 * 109.96261 * 316.28202 * 4 2 1 35 35 H 1.09001 * 109.49861 * 297.25449 * 5 4 2 36 36 H 1.09001 * 109.50212 * 177.15933 * 5 4 2 37 37 H 1.09003 * 109.00076 * 162.86056 * 6 5 4 38 38 H 1.08996 * 109.00031 * 44.09897 * 6 5 4 39 39 H 0.97004 * 120.00144 * 295.65439 * 8 7 6 40 40 H 1.08997 * 109.47072 * 299.99587 * 11 9 8 41 41 H 1.09001 * 109.47026 * 60.00084 * 11 9 8 42 42 H 1.09002 * 109.47343 * 300.00126 * 12 11 9 43 43 H 1.09007 * 109.47292 * 59.99975 * 12 11 9 44 44 H 1.08005 * 120.02273 * 0.02562 * 15 14 13 45 45 H 1.07992 * 119.97463 * 180.27530 * 16 15 14 46 46 H 1.08008 * 119.94098 * 179.70185 * 17 16 15 47 47 H 1.09004 * 109.46708 * 125.02861 * 19 18 17 48 48 H 0.96701 * 113.99991 * 60.00306 * 20 19 18 49 49 H 1.07999 * 120.03047 * 179.97438 * 25 18 17 50 50 H 1.09002 * 109.94693 * 59.06572 * 26 7 6 51 51 H 1.08998 * 109.94856 * 180.23237 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5021 1.7500 0.0000 4 6 2.5085 -0.9195 -1.5046 5 6 3.9854 -1.2519 -1.2258 6 6 4.0853 -2.0643 0.0623 7 7 3.9267 -1.2249 1.2507 8 7 4.5034 -1.8083 2.3428 9 6 5.5552 -1.2188 2.9452 10 8 5.9892 -0.1701 2.5179 11 6 6.1918 -1.8628 4.1498 12 6 7.3556 -0.9967 4.6358 13 8 7.9590 -1.6070 5.7784 14 6 9.0153 -0.9603 6.3378 15 6 9.4655 0.2341 5.7946 16 6 10.5360 0.8926 6.3686 17 6 11.1658 0.3559 7.4760 18 6 10.7222 -0.8372 8.0162 19 6 11.4109 -1.4191 9.2239 20 8 12.0302 -2.6570 8.8688 21 14 12.7076 -0.2282 9.8331 22 1 12.0640 1.0582 10.2022 23 1 13.3866 -0.8019 11.0228 24 1 13.7062 0.0078 8.7597 25 6 9.6489 -1.4966 7.4496 26 6 2.5043 -0.9168 1.5043 27 1 -0.3633 0.4925 0.9019 28 1 -0.3633 0.5349 -0.8776 29 1 -0.3632 -1.0274 -0.0245 30 1 3.5917 1.7390 -0.0245 31 1 2.1242 2.2748 -0.8775 32 1 2.1641 2.2602 0.9019 33 1 2.4297 -0.2873 -2.3891 34 1 1.9410 -1.8386 -1.6507 35 1 4.5523 -0.3272 -1.1176 36 1 4.3904 -1.8326 -2.0546 37 1 5.0596 -2.5517 0.0998 38 1 3.3079 -2.8283 0.0613 39 1 4.1561 -2.6470 2.6849 40 1 5.4521 -1.9573 4.9448 41 1 6.5632 -2.8514 3.8796 42 1 8.0953 -0.9025 3.8407 43 1 6.9846 -0.0079 4.9060 44 1 8.9764 0.6514 4.9268 45 1 10.8840 1.8247 5.9488 46 1 12.0055 0.8697 7.9204 47 1 10.6778 -1.5924 10.0117 48 1 12.6954 -2.5781 8.1714 49 1 9.3031 -2.4286 7.8716 50 1 1.9430 -1.8407 1.6440 51 1 2.4122 -0.2884 2.3901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_4549614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:18:17 Heat of formation + Delta-G solvation = -88.387440 kcal Electronic energy + Delta-G solvation = -28361.452496 eV Core-core repulsion = 24385.574855 eV Total energy + Delta-G solvation = -3975.877642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.178 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.35263 -40.89296 -39.20257 -38.47574 -37.21369 -34.96055 -33.41440 -32.41112 -31.62727 -30.57594 -29.45343 -28.45471 -27.66557 -27.01137 -25.85383 -24.19761 -23.63245 -22.11614 -21.85812 -21.38735 -19.32173 -18.58474 -18.13361 -17.66298 -17.47997 -17.13356 -16.78615 -16.67489 -16.13710 -15.70421 -15.55220 -15.30981 -14.96911 -14.94760 -14.77084 -14.58935 -14.43323 -14.26030 -14.13446 -13.90145 -13.84255 -13.63034 -13.31499 -13.21902 -13.19513 -13.07194 -12.90612 -12.83114 -12.35407 -12.14928 -12.13439 -12.07811 -11.87373 -11.77159 -11.48039 -11.35314 -10.92347 -10.74590 -10.46006 -10.43702 -10.20616 -9.86195 -9.77350 -9.18237 0.27603 0.46730 1.15144 1.25913 1.45691 1.54633 1.60477 1.69447 1.75320 1.87839 1.94135 2.35563 2.49211 2.73859 3.33768 3.48849 3.53295 3.69277 3.83832 3.85396 3.90423 3.93550 4.07503 4.09879 4.24656 4.29635 4.33080 4.37924 4.44590 4.55908 4.57846 4.60863 4.61135 4.62101 4.63677 4.66308 4.74731 4.76351 4.82511 4.87989 4.98141 5.03701 5.19442 5.32285 5.32561 5.38376 5.43623 5.49880 5.63862 5.71420 5.74328 6.24799 6.31169 6.43484 6.56075 7.48845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.031 2.969 3 C -0.443 4.443 4 C -0.409 4.409 5 C -0.101 4.101 6 C 0.026 3.974 7 N -0.277 5.277 8 N -0.586 5.586 9 C 0.535 3.465 10 O -0.513 6.513 11 C -0.138 4.138 12 C 0.075 3.925 13 O -0.316 6.316 14 C 0.133 3.867 15 C -0.202 4.202 16 C -0.072 4.072 17 C -0.164 4.164 18 C -0.083 4.083 19 C -0.081 4.081 20 O -0.537 6.537 21 Si 0.954 3.046 22 H -0.250 1.250 23 H -0.255 1.255 24 H -0.252 1.252 25 C -0.122 4.122 26 C -0.260 4.260 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.380 0.620 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.133 0.867 45 H 0.130 0.870 46 H 0.122 0.878 47 H 0.119 0.881 48 H 0.377 0.623 49 H 0.135 0.865 50 H 0.054 0.946 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.788 -1.561 -1.541 3.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.224 2.776 3 C -0.552 4.552 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.102 4.102 7 N -0.093 5.093 8 N -0.330 5.330 9 C 0.321 3.679 10 O -0.386 6.386 11 C -0.179 4.179 12 C 0.000 4.000 13 O -0.230 6.230 14 C 0.087 3.913 15 C -0.221 4.221 16 C -0.091 4.091 17 C -0.182 4.182 18 C -0.084 4.084 19 C -0.192 4.192 20 O -0.342 6.342 21 Si 0.777 3.223 22 H -0.174 1.174 23 H -0.179 1.179 24 H -0.176 1.176 25 C -0.141 4.141 26 C -0.433 4.433 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.218 0.782 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.224 0.776 49 H 0.153 0.847 50 H 0.072 0.928 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.058 -0.223 -1.068 2.329 hybrid contribution -0.791 -1.198 -0.446 1.504 sum -2.849 -1.422 -1.515 3.526 Atomic orbital electron populations 1.26116 1.20290 1.04586 1.04852 0.79237 0.65873 0.67679 0.64804 1.26029 1.07281 1.17719 1.04153 1.26400 1.00720 1.08074 1.14373 1.21187 0.96606 1.01142 0.94988 1.22582 1.02155 0.95191 0.90297 1.62981 1.13951 1.38284 0.94037 1.45584 1.33497 1.25303 1.28648 1.20153 0.79080 0.85019 0.83667 1.90732 1.61349 1.22026 1.64482 1.21432 0.98472 1.01239 0.96786 1.22403 0.94516 0.96276 0.86844 1.85967 1.43640 1.49071 1.44319 1.18962 0.87670 0.91470 0.93158 1.21402 1.00855 0.96614 1.03184 1.20907 0.94304 0.99154 0.94688 1.20973 1.01826 0.96829 0.98575 1.20085 0.96024 0.94924 0.97321 1.25028 1.03102 0.93623 0.97437 1.86524 1.58048 1.29361 1.60283 0.85615 0.78247 0.77806 0.80611 1.17358 1.17870 1.17554 1.20236 0.96630 1.01559 0.95691 1.28066 0.90705 1.07042 1.17464 0.91042 0.90671 0.91200 0.90365 0.91329 0.91359 0.90077 0.90700 0.90243 0.90836 0.90216 0.93709 0.78199 0.87478 0.87482 0.90810 0.90814 0.84907 0.85254 0.86048 0.86278 0.77599 0.84669 0.92767 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.00 8.65 101.05 0.87 1.87 16 2 Si 1.03 -2.61 12.01 -169.99 -2.04 -4.65 16 3 C -0.44 0.20 8.65 101.05 0.87 1.07 16 4 C -0.41 0.82 5.04 37.64 0.19 1.01 16 5 C -0.10 0.09 5.74 -26.44 -0.15 -0.06 16 6 C 0.03 -0.02 5.38 -4.32 -0.02 -0.04 16 7 N -0.28 -0.11 4.15 -56.97 -0.24 -0.35 16 8 N -0.59 0.22 4.71 31.22 0.15 0.36 16 9 C 0.53 0.66 7.93 -10.98 -0.09 0.57 16 10 O -0.51 -2.75 16.31 5.56 0.09 -2.66 16 11 C -0.14 0.19 6.07 -27.88 -0.17 0.02 16 12 C 0.08 0.04 4.03 37.16 0.15 0.19 16 13 O -0.32 -0.65 10.14 -19.42 -0.20 -0.85 16 14 C 0.13 0.33 6.69 -39.22 -0.26 0.07 16 15 C -0.20 -0.35 9.04 -39.43 -0.36 -0.70 16 16 C -0.07 -0.08 10.04 -39.61 -0.40 -0.47 16 17 C -0.16 -0.17 8.67 -39.56 -0.34 -0.52 16 18 C -0.08 -0.10 5.35 -104.64 -0.56 -0.66 16 19 C -0.08 0.00 2.80 36.01 0.10 0.10 16 20 O -0.54 -0.40 12.83 -35.23 -0.45 -0.85 16 21 Si 0.95 -0.28 25.14 -169.99 -4.27 -4.55 16 22 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 23 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 24 H -0.25 0.04 7.04 56.52 0.40 0.44 16 25 C -0.12 -0.26 9.62 -39.43 -0.38 -0.64 16 26 C -0.26 0.31 4.85 60.52 0.29 0.61 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 30 H 0.08 0.08 7.96 -51.93 -0.41 -0.33 16 31 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 32 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 33 H 0.08 -0.17 7.99 -51.93 -0.42 -0.59 16 34 H 0.07 -0.18 7.99 -51.93 -0.42 -0.59 16 35 H 0.08 0.01 7.97 -51.93 -0.41 -0.40 16 36 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 37 H 0.08 -0.03 8.03 -51.93 -0.42 -0.45 16 38 H 0.04 -0.08 7.78 -51.93 -0.40 -0.49 16 39 H 0.38 -1.17 8.83 -185.15 -1.63 -2.81 16 40 H 0.11 -0.30 8.14 -51.93 -0.42 -0.73 16 41 H 0.11 -0.31 8.14 -51.93 -0.42 -0.73 16 42 H 0.07 0.07 7.61 -51.93 -0.40 -0.33 16 43 H 0.07 0.07 7.63 -51.93 -0.40 -0.32 16 44 H 0.13 0.10 6.30 -52.48 -0.33 -0.23 16 45 H 0.13 -0.12 8.06 -52.49 -0.42 -0.54 16 46 H 0.12 -0.04 4.86 -52.48 -0.25 -0.29 16 47 H 0.12 -0.09 7.96 -51.93 -0.41 -0.51 16 48 H 0.38 -0.91 8.70 45.56 0.40 -0.51 16 49 H 0.14 0.23 8.06 -52.49 -0.42 -0.19 16 50 H 0.05 -0.12 7.92 -51.93 -0.41 -0.54 16 51 H 0.09 -0.05 7.99 -51.93 -0.41 -0.47 16 LS Contribution 410.97 15.07 6.19 6.19 Total: 0.00 -7.94 410.97 -10.33 -18.28 By element: Atomic # 1 Polarization: -4.00 SS G_CDS: -9.31 Total: -13.32 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -0.25 Total: 2.40 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: -0.09 Total: 0.01 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.56 Total: -4.36 kcal Atomic # 14 Polarization: -2.89 SS G_CDS: -6.32 Total: -9.20 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -7.94 -10.33 -18.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_4549614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.111 kcal (2) G-P(sol) polarization free energy of solvation -7.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds