Wall clock time and date at job start Sun Mar 7 2021 09:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86302 * 110.05882 * 2 1 4 4 C 1.87772 * 110.10326 * 238.56976 * 2 1 3 5 5 C 1.53930 * 106.88145 * 196.93423 * 4 2 1 6 6 C 1.52620 * 109.31054 * 57.20377 * 5 4 2 7 7 N 1.46354 * 111.89365 * 283.47909 * 6 5 4 8 8 N 1.36597 * 111.00439 * 203.19512 * 7 6 5 9 9 C 1.34777 * 120.00136 * 115.64904 * 8 7 6 10 10 O 1.21279 * 120.00092 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00055 * 180.02562 * 9 8 7 12 12 C 1.53000 * 109.47133 * 179.97438 * 11 9 8 13 13 O 1.42898 * 109.47494 * 179.97438 * 12 11 9 14 14 C 1.35898 * 117.00581 * 180.02562 * 13 12 11 15 15 C 1.38716 * 120.05374 * 359.72796 * 14 13 12 16 16 C 1.38165 * 119.94483 * 179.71957 * 15 14 13 17 17 C 1.38245 * 120.05112 * 0.58077 * 16 15 14 18 18 C 1.38281 * 120.11444 * 359.66836 * 17 16 15 19 19 C 1.50706 * 119.97363 * 180.02562 * 18 17 16 20 20 O 1.42896 * 109.47257 * 245.02724 * 19 18 17 21 21 Si 1.86302 * 109.46841 * 5.03063 * 19 18 17 22 22 H 1.48496 * 109.47403 * 59.99776 * 21 19 18 23 23 H 1.48503 * 109.46673 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46795 * 299.99512 * 21 19 18 25 25 C 1.38124 * 120.05761 * 0.05801 * 18 17 16 26 26 C 1.47726 * 111.30712 * 79.01876 * 7 6 5 27 27 H 1.08997 * 109.46901 * 298.63756 * 1 2 3 28 28 H 1.09005 * 109.46732 * 58.63878 * 1 2 3 29 29 H 1.08995 * 109.46671 * 178.63368 * 1 2 3 30 30 H 1.09000 * 109.47456 * 181.36346 * 3 2 1 31 31 H 1.09002 * 109.47079 * 301.36550 * 3 2 1 32 32 H 1.08997 * 109.47362 * 61.36560 * 3 2 1 33 33 H 1.09006 * 109.96179 * 77.59600 * 4 2 1 34 34 H 1.08997 * 109.96261 * 316.28202 * 4 2 1 35 35 H 1.09001 * 109.49861 * 297.25449 * 5 4 2 36 36 H 1.09001 * 109.50212 * 177.15933 * 5 4 2 37 37 H 1.09003 * 109.00076 * 162.86056 * 6 5 4 38 38 H 1.08996 * 109.00031 * 44.09897 * 6 5 4 39 39 H 0.97004 * 120.00144 * 295.65439 * 8 7 6 40 40 H 1.08997 * 109.47072 * 299.99587 * 11 9 8 41 41 H 1.09001 * 109.47026 * 60.00084 * 11 9 8 42 42 H 1.09002 * 109.47343 * 300.00126 * 12 11 9 43 43 H 1.09007 * 109.47292 * 59.99975 * 12 11 9 44 44 H 1.08005 * 120.02273 * 0.02562 * 15 14 13 45 45 H 1.07992 * 119.97463 * 180.27530 * 16 15 14 46 46 H 1.08008 * 119.94098 * 179.70185 * 17 16 15 47 47 H 1.09004 * 109.46708 * 125.02861 * 19 18 17 48 48 H 0.96701 * 113.99991 * 60.00306 * 20 19 18 49 49 H 1.07999 * 120.03047 * 179.97438 * 25 18 17 50 50 H 1.09002 * 109.94693 * 59.06572 * 26 7 6 51 51 H 1.08998 * 109.94856 * 180.23237 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5021 1.7500 0.0000 4 6 2.5085 -0.9195 -1.5046 5 6 3.9854 -1.2519 -1.2258 6 6 4.0853 -2.0643 0.0623 7 7 3.9267 -1.2249 1.2507 8 7 4.5034 -1.8083 2.3428 9 6 5.5552 -1.2188 2.9452 10 8 5.9892 -0.1701 2.5179 11 6 6.1918 -1.8628 4.1498 12 6 7.3556 -0.9967 4.6358 13 8 7.9590 -1.6070 5.7784 14 6 9.0153 -0.9603 6.3378 15 6 9.4655 0.2341 5.7946 16 6 10.5360 0.8926 6.3686 17 6 11.1658 0.3559 7.4760 18 6 10.7222 -0.8372 8.0162 19 6 11.4109 -1.4191 9.2239 20 8 12.0302 -2.6570 8.8688 21 14 12.7076 -0.2282 9.8331 22 1 12.0640 1.0582 10.2022 23 1 13.3866 -0.8019 11.0228 24 1 13.7062 0.0078 8.7597 25 6 9.6489 -1.4966 7.4496 26 6 2.5043 -0.9168 1.5043 27 1 -0.3633 0.4925 0.9019 28 1 -0.3633 0.5349 -0.8776 29 1 -0.3632 -1.0274 -0.0245 30 1 3.5917 1.7390 -0.0245 31 1 2.1242 2.2748 -0.8775 32 1 2.1641 2.2602 0.9019 33 1 2.4297 -0.2873 -2.3891 34 1 1.9410 -1.8386 -1.6507 35 1 4.5523 -0.3272 -1.1176 36 1 4.3904 -1.8326 -2.0546 37 1 5.0596 -2.5517 0.0998 38 1 3.3079 -2.8283 0.0613 39 1 4.1561 -2.6470 2.6849 40 1 5.4521 -1.9573 4.9448 41 1 6.5632 -2.8514 3.8796 42 1 8.0953 -0.9025 3.8407 43 1 6.9846 -0.0079 4.9060 44 1 8.9764 0.6514 4.9268 45 1 10.8840 1.8247 5.9488 46 1 12.0055 0.8697 7.9204 47 1 10.6778 -1.5924 10.0117 48 1 12.6954 -2.5781 8.1714 49 1 9.3031 -2.4286 7.8716 50 1 1.9430 -1.8407 1.6440 51 1 2.4122 -0.2884 2.3901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_4549614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:18:16 Heat of formation + Delta-G solvation = -83.818597 kcal Electronic energy + Delta-G solvation = -28361.254376 eV Core-core repulsion = 24385.574855 eV Total energy + Delta-G solvation = -3975.679522 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.178 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.43358 -40.95348 -39.25372 -38.52819 -37.25553 -34.93870 -33.44226 -32.48280 -31.63058 -30.61693 -29.32674 -28.35755 -27.55242 -27.04877 -25.85408 -24.15314 -23.71766 -22.14579 -21.81893 -21.42804 -19.38761 -18.56565 -18.16532 -17.72255 -17.52419 -17.20174 -16.85895 -16.66547 -16.14730 -15.73863 -15.58449 -15.30630 -14.97792 -14.89942 -14.77898 -14.57756 -14.39180 -14.31871 -13.97780 -13.91748 -13.80773 -13.50169 -13.24318 -13.19817 -13.12570 -13.00205 -12.93668 -12.85926 -12.38887 -12.15035 -12.03322 -11.97562 -11.92209 -11.82132 -11.52062 -11.36714 -10.81715 -10.77994 -10.45860 -10.36000 -10.18895 -9.95202 -9.68898 -9.29524 0.18034 0.36083 1.16522 1.33811 1.47806 1.55149 1.56844 1.78938 1.89662 1.91944 2.02371 2.37453 2.61463 2.64192 3.41302 3.50878 3.56626 3.68129 3.82973 3.87600 3.93171 4.01778 4.05189 4.17141 4.19389 4.27838 4.39279 4.42804 4.53409 4.55202 4.63953 4.65333 4.68429 4.73970 4.76799 4.79801 4.81184 4.84523 4.84912 4.92134 4.96551 5.09353 5.23380 5.29724 5.34746 5.40957 5.46832 5.58023 5.65449 5.67506 5.81401 6.24134 6.29961 6.37604 6.69450 7.50330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.092 2.908 3 C -0.465 4.465 4 C -0.414 4.414 5 C -0.104 4.104 6 C 0.026 3.974 7 N -0.302 5.302 8 N -0.577 5.577 9 C 0.534 3.466 10 O -0.563 6.563 11 C -0.127 4.127 12 C 0.076 3.924 13 O -0.322 6.322 14 C 0.118 3.882 15 C -0.211 4.211 16 C -0.077 4.077 17 C -0.170 4.170 18 C -0.084 4.084 19 C -0.082 4.082 20 O -0.551 6.551 21 Si 0.989 3.011 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.250 1.250 25 C -0.135 4.135 26 C -0.270 4.270 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.396 0.604 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.136 0.864 45 H 0.148 0.852 46 H 0.136 0.864 47 H 0.125 0.875 48 H 0.389 0.611 49 H 0.135 0.865 50 H 0.070 0.930 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.529 -2.528 -1.580 4.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.281 2.719 3 C -0.571 4.571 4 C -0.500 4.500 5 C -0.142 4.142 6 C -0.101 4.101 7 N -0.119 5.119 8 N -0.322 5.322 9 C 0.321 3.679 10 O -0.440 6.440 11 C -0.168 4.168 12 C 0.000 4.000 13 O -0.236 6.236 14 C 0.073 3.927 15 C -0.230 4.230 16 C -0.095 4.095 17 C -0.188 4.188 18 C -0.084 4.084 19 C -0.192 4.192 20 O -0.359 6.359 21 Si 0.813 3.187 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.174 1.174 25 C -0.154 4.154 26 C -0.441 4.441 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.236 0.764 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.154 0.846 45 H 0.166 0.834 46 H 0.153 0.847 47 H 0.143 0.857 48 H 0.238 0.762 49 H 0.153 0.847 50 H 0.089 0.911 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.806 -1.206 -1.113 3.250 hybrid contribution -0.545 -0.878 -0.436 1.121 sum -3.351 -2.084 -1.549 4.239 Atomic orbital electron populations 1.26155 1.20085 1.05129 1.04936 0.78308 0.65142 0.64848 0.63599 1.26340 1.06054 1.20639 1.04039 1.26466 0.99947 1.08800 1.14768 1.21205 0.97332 1.00463 0.95249 1.22579 1.02390 0.95340 0.89827 1.62951 1.14975 1.39370 0.94571 1.45497 1.32856 1.25604 1.28224 1.20589 0.78980 0.84395 0.83922 1.90712 1.62929 1.24262 1.66060 1.21383 0.98030 1.01272 0.96111 1.22407 0.94913 0.96448 0.86231 1.85945 1.43664 1.49305 1.44669 1.19159 0.88047 0.91941 0.93575 1.21536 1.01307 0.96658 1.03500 1.21193 0.93908 0.99771 0.94619 1.21196 1.02196 0.96846 0.98588 1.20250 0.95702 0.94947 0.97528 1.25125 1.03433 0.93576 0.97069 1.86490 1.58605 1.29818 1.60945 0.85116 0.77387 0.76734 0.79432 1.18144 1.19974 1.17405 1.20351 0.97205 1.01856 0.95960 1.28238 0.90058 1.07937 1.17897 0.91098 0.90508 0.90406 0.92411 0.90987 0.91923 0.89844 0.89493 0.91962 0.90359 0.90886 0.92024 0.76354 0.85519 0.85440 0.91602 0.91670 0.84615 0.83393 0.84695 0.85687 0.76168 0.84714 0.91129 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.51 8.65 113.37 0.98 3.49 16 2 Si 1.09 -5.64 12.01 68.60 0.82 -4.82 16 3 C -0.47 -0.31 8.65 113.37 0.98 0.67 16 4 C -0.41 1.89 5.04 72.30 0.36 2.26 16 5 C -0.10 0.15 5.74 30.78 0.18 0.33 16 6 C 0.03 -0.04 5.38 86.28 0.46 0.42 16 7 N -0.30 -0.36 4.15 -334.16 -1.39 -1.74 16 8 N -0.58 0.39 4.71 -173.53 -0.82 -0.43 16 9 C 0.53 1.74 7.93 87.66 0.70 2.43 16 10 O -0.56 -7.19 16.31 -3.03 -0.05 -7.24 16 11 C -0.13 0.35 6.07 29.85 0.18 0.53 16 12 C 0.08 0.17 4.03 71.98 0.29 0.46 16 13 O -0.32 -1.60 10.14 -92.40 -0.94 -2.53 16 14 C 0.12 0.70 6.69 22.51 0.15 0.85 16 15 C -0.21 -0.93 9.04 22.37 0.20 -0.73 16 16 C -0.08 -0.18 10.04 22.25 0.22 0.05 16 17 C -0.17 -0.34 8.67 22.28 0.19 -0.14 16 18 C -0.08 -0.23 5.35 -19.88 -0.11 -0.34 16 19 C -0.08 -0.01 2.80 71.24 0.20 0.19 16 20 O -0.55 -0.81 12.83 -148.98 -1.91 -2.72 16 21 Si 0.99 -0.86 25.14 68.60 1.72 0.87 16 22 H -0.26 -0.08 7.11 99.48 0.71 0.63 16 23 H -0.27 -0.66 7.11 99.48 0.71 0.05 16 24 H -0.25 0.30 7.04 99.48 0.70 1.00 16 25 C -0.14 -0.68 9.62 22.37 0.22 -0.46 16 26 C -0.27 0.71 4.85 127.53 0.62 1.33 16 27 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 28 H 0.08 -0.41 7.96 -2.38 -0.02 -0.43 16 29 H 0.08 -0.51 7.96 -2.39 -0.02 -0.53 16 30 H 0.06 0.28 7.96 -2.39 -0.02 0.26 16 31 H 0.07 -0.05 7.96 -2.39 -0.02 -0.06 16 32 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 33 H 0.08 -0.40 7.99 -2.38 -0.02 -0.41 16 34 H 0.09 -0.57 7.99 -2.39 -0.02 -0.59 16 35 H 0.06 0.12 7.97 -2.39 -0.02 0.10 16 36 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.07 -0.03 8.03 -2.39 -0.02 -0.05 16 38 H 0.06 -0.31 7.78 -2.39 -0.02 -0.33 16 39 H 0.40 -2.78 8.83 -215.49 -1.90 -4.69 16 40 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 42 H 0.07 0.24 7.61 -2.39 -0.02 0.22 16 43 H 0.06 0.25 7.63 -2.38 -0.02 0.23 16 44 H 0.14 0.42 6.30 -2.91 -0.02 0.40 16 45 H 0.15 -0.33 8.06 -2.91 -0.02 -0.35 16 46 H 0.14 -0.18 4.86 -2.91 -0.01 -0.19 16 47 H 0.13 -0.19 7.96 -2.39 -0.02 -0.21 16 48 H 0.39 -1.91 8.70 -74.06 -0.64 -2.56 16 49 H 0.13 0.59 8.06 -2.91 -0.02 0.56 16 50 H 0.07 -0.43 7.92 -2.39 -0.02 -0.45 16 51 H 0.08 -0.06 7.99 -2.39 -0.02 -0.08 16 Total: 0.00 -19.41 410.97 2.41 -17.01 By element: Atomic # 1 Polarization: -8.86 SS G_CDS: -0.87 Total: -9.74 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 5.83 Total: 11.35 kcal Atomic # 7 Polarization: 0.03 SS G_CDS: -2.20 Total: -2.18 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -2.90 Total: -12.49 kcal Atomic # 14 Polarization: -6.50 SS G_CDS: 2.55 Total: -3.95 kcal Total: -19.41 2.41 -17.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_4549614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.813 kcal (2) G-P(sol) polarization free energy of solvation -19.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds