Wall clock time and date at job start Sun Mar 7 2021 09:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86301 * 110.06130 * 2 1 4 4 C 1.87532 * 110.00097 * 238.63767 * 2 1 3 5 5 C 1.53928 * 106.84742 * 196.90264 * 4 2 1 6 6 C 1.52623 * 109.31019 * 57.20569 * 5 4 2 7 7 N 1.46355 * 111.89109 * 283.47497 * 6 5 4 8 8 N 1.36604 * 111.00175 * 203.19879 * 7 6 5 9 9 C 1.34781 * 119.99902 * 111.06602 * 8 7 6 10 10 O 1.21280 * 119.99697 * 5.01244 * 9 8 7 11 11 C 1.50698 * 119.99519 * 185.01050 * 9 8 7 12 12 C 1.53003 * 109.46659 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.46870 * 180.02562 * 12 11 9 14 14 O 1.42901 * 109.46677 * 180.02562 * 13 12 11 15 15 C 1.35903 * 116.99610 * 179.97438 * 14 13 12 16 16 C 1.38713 * 120.05423 * 359.73458 * 15 14 13 17 17 C 1.38171 * 119.94134 * 179.71754 * 16 15 14 18 18 C 1.38244 * 120.05156 * 0.57195 * 17 16 15 19 19 C 1.38288 * 120.11517 * 359.67846 * 18 17 16 20 20 C 1.50703 * 119.97148 * 180.02562 * 19 18 17 21 21 O 1.42898 * 109.46782 * 245.02146 * 20 19 18 22 22 Si 1.86301 * 109.47205 * 5.01937 * 20 19 18 23 23 H 1.48502 * 109.47064 * 60.00279 * 22 20 19 24 24 H 1.48497 * 109.47126 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47334 * 300.00038 * 22 20 19 26 26 C 1.38117 * 120.05440 * 0.04384 * 19 18 17 27 27 C 1.47723 * 111.30613 * 79.02216 * 7 6 5 28 28 H 1.08998 * 109.47386 * 298.63813 * 1 2 3 29 29 H 1.09003 * 109.46988 * 58.63223 * 1 2 3 30 30 H 1.09002 * 109.47156 * 178.63173 * 1 2 3 31 31 H 1.09006 * 109.46735 * 181.36397 * 3 2 1 32 32 H 1.08997 * 109.47088 * 301.36414 * 3 2 1 33 33 H 1.08992 * 109.47057 * 61.36655 * 3 2 1 34 34 H 1.09000 * 109.97596 * 316.23489 * 4 2 1 35 35 H 1.08999 * 109.97625 * 77.47491 * 4 2 1 36 36 H 1.09005 * 109.49626 * 177.15669 * 5 4 2 37 37 H 1.08998 * 109.49407 * 297.22215 * 5 4 2 38 38 H 1.09006 * 108.99662 * 162.86071 * 6 5 4 39 39 H 1.09000 * 109.00217 * 44.09708 * 6 5 4 40 40 H 0.96998 * 119.99808 * 291.06447 * 8 7 6 41 41 H 1.08999 * 109.47121 * 299.99734 * 11 9 8 42 42 H 1.09000 * 109.47313 * 60.00529 * 11 9 8 43 43 H 1.08999 * 109.47147 * 299.99731 * 12 11 9 44 44 H 1.09000 * 109.47281 * 59.99980 * 12 11 9 45 45 H 1.08999 * 109.46861 * 299.99716 * 13 12 11 46 46 H 1.08997 * 109.46855 * 60.00400 * 13 12 11 47 47 H 1.07994 * 120.02906 * 359.97438 * 16 15 14 48 48 H 1.07989 * 119.97417 * 180.27020 * 17 16 15 49 49 H 1.08005 * 119.94180 * 179.70172 * 18 17 16 50 50 H 1.09001 * 109.47170 * 125.02199 * 20 19 18 51 51 H 0.96691 * 114.00544 * 59.99922 * 21 20 19 52 52 H 1.08001 * 120.03002 * 180.02562 * 26 19 18 53 53 H 1.09003 * 109.94569 * 59.06434 * 27 7 6 54 54 H 1.09000 * 109.94791 * 180.23262 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5021 1.7500 0.0000 4 6 2.5045 -0.9171 -1.5047 5 6 3.9816 -1.2501 -1.2281 6 6 4.0830 -2.0637 0.0592 7 7 3.9262 -1.2252 1.2485 8 7 4.5043 -1.8097 2.3394 9 6 5.6127 -1.2706 2.8847 10 8 6.0446 -0.2180 2.4648 11 6 6.3151 -1.9758 4.0162 12 6 7.5348 -1.1588 4.4473 13 6 8.2484 -1.8751 5.5957 14 8 9.3872 -1.1118 5.9988 15 6 10.1364 -1.6119 7.0164 16 6 9.7797 -2.8097 7.6182 17 6 10.5464 -3.3189 8.6486 18 6 11.6615 -2.6298 9.0878 19 6 12.0163 -1.4329 8.4930 20 6 13.2328 -0.6846 8.9739 21 8 12.8304 0.5623 9.5441 22 14 14.1173 -1.6996 10.2616 23 1 14.5355 -2.9955 9.6691 24 1 15.3157 -0.9621 10.7360 25 1 13.2056 -1.9502 11.4067 26 6 11.2564 -0.9225 7.4587 27 6 2.5043 -0.9170 1.5042 28 1 -0.3634 0.4925 0.9019 29 1 -0.3633 0.5349 -0.8775 30 1 -0.3633 -1.0274 -0.0245 31 1 3.5918 1.7388 -0.0245 32 1 2.1243 2.2747 -0.8775 33 1 2.1642 2.2601 0.9019 34 1 1.9366 -1.8360 -1.6508 35 1 2.4231 -0.2849 -2.3889 36 1 4.3853 -1.8303 -2.0579 37 1 4.5489 -0.3257 -1.1205 38 1 5.0573 -2.5513 0.0950 39 1 3.3054 -2.8275 0.0586 40 1 4.1171 -2.6128 2.7216 41 1 5.6317 -2.0812 4.8587 42 1 6.6381 -2.9626 3.6846 43 1 8.2181 -1.0538 3.6047 44 1 7.2123 -0.1718 4.7788 45 1 7.5653 -1.9805 6.4385 46 1 8.5710 -2.8620 5.2638 47 1 8.9058 -3.3458 7.2788 48 1 10.2716 -4.2536 9.1146 49 1 12.2568 -3.0271 9.8967 50 1 13.9020 -0.5007 8.1335 51 1 12.2323 0.4750 10.2988 52 1 11.5341 0.0121 6.9941 53 1 1.9429 -1.8408 1.6439 54 1 2.4134 -0.2893 2.3906 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_4549616.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:18:30 Heat of formation + Delta-G solvation = -90.787168 kcal Electronic energy + Delta-G solvation = -29860.986817 eV Core-core repulsion = 25729.467496 eV Total energy + Delta-G solvation = -4131.519321 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.193 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.30800 -40.97939 -39.23856 -38.59069 -37.28535 -34.93152 -34.82559 -32.46066 -31.86846 -31.08256 -29.33602 -28.36276 -28.26235 -27.51220 -26.80552 -24.86151 -23.72438 -23.24884 -21.91309 -21.76272 -21.39101 -19.22790 -18.52866 -18.05673 -17.92482 -17.47576 -17.21605 -16.86050 -16.73953 -16.17850 -15.83639 -15.63207 -15.45783 -15.02540 -14.94058 -14.81459 -14.55947 -14.45105 -14.28067 -14.19383 -13.97671 -13.81520 -13.50501 -13.31399 -13.27737 -13.19893 -13.11952 -13.07550 -12.95758 -12.74859 -12.32762 -12.26399 -12.11686 -12.03428 -11.97891 -11.87493 -11.60188 -11.50002 -11.31065 -10.81975 -10.71530 -10.45986 -10.36321 -10.19027 -9.92565 -9.60712 -9.24973 0.21282 0.39401 1.16293 1.45221 1.47499 1.54633 1.66182 1.84778 1.89574 1.91436 2.08683 2.32594 2.61709 2.67480 3.40792 3.52760 3.66376 3.69803 3.84478 3.88889 3.96768 4.01808 4.08009 4.13379 4.21659 4.25005 4.35974 4.40522 4.42879 4.47304 4.53017 4.56297 4.62876 4.67763 4.70998 4.75219 4.79208 4.80672 4.84056 4.85150 4.91810 4.98982 5.01335 5.08552 5.17531 5.28465 5.29136 5.36881 5.43847 5.46399 5.57989 5.64853 5.73480 5.83134 6.32386 6.43395 6.46765 6.68590 7.59595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.092 2.908 3 C -0.466 4.466 4 C -0.414 4.414 5 C -0.105 4.105 6 C 0.027 3.973 7 N -0.306 5.306 8 N -0.581 5.581 9 C 0.522 3.478 10 O -0.569 6.569 11 C -0.122 4.122 12 C -0.101 4.101 13 C 0.059 3.941 14 O -0.337 6.337 15 C 0.117 3.883 16 C -0.206 4.206 17 C -0.074 4.074 18 C -0.174 4.174 19 C -0.084 4.084 20 C -0.089 4.089 21 O -0.554 6.554 22 Si 0.995 3.005 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.247 1.247 26 C -0.147 4.147 27 C -0.268 4.268 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.396 0.604 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.154 0.846 48 H 0.155 0.845 49 H 0.135 0.865 50 H 0.120 0.880 51 H 0.389 0.611 52 H 0.122 0.878 53 H 0.071 0.929 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 -8.512 1.382 10.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.280 2.720 3 C -0.572 4.572 4 C -0.500 4.500 5 C -0.143 4.143 6 C -0.101 4.101 7 N -0.122 5.122 8 N -0.326 5.326 9 C 0.310 3.690 10 O -0.445 6.445 11 C -0.163 4.163 12 C -0.139 4.139 13 C -0.016 4.016 14 O -0.251 6.251 15 C 0.072 3.928 16 C -0.224 4.224 17 C -0.092 4.092 18 C -0.192 4.192 19 C -0.085 4.085 20 C -0.198 4.198 21 O -0.361 6.361 22 Si 0.818 3.182 23 H -0.179 1.179 24 H -0.202 1.202 25 H -0.170 1.170 26 C -0.165 4.165 27 C -0.440 4.440 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.236 0.764 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.171 0.829 48 H 0.173 0.827 49 H 0.153 0.847 50 H 0.137 0.863 51 H 0.238 0.762 52 H 0.140 0.860 53 H 0.090 0.910 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.421 -7.438 1.079 8.719 hybrid contribution -1.039 -0.714 0.189 1.275 sum -5.460 -8.151 1.268 9.893 Atomic orbital electron populations 1.26138 1.19892 1.05183 1.04954 0.78296 0.65243 0.64725 0.63692 1.26362 1.05939 1.20866 1.04020 1.26446 0.99892 1.08856 1.14831 1.21205 0.97347 1.00388 0.95398 1.22574 1.02258 0.95317 0.89906 1.62940 1.15057 1.39382 0.94835 1.45608 1.28661 1.29774 1.28552 1.21203 0.79393 0.84864 0.83557 1.90713 1.65957 1.24253 1.63625 1.21505 0.97016 1.00643 0.97104 1.21138 0.96161 0.99375 0.97214 1.22981 0.85690 0.95096 0.97825 1.86060 1.40051 1.50132 1.48881 1.19220 0.91697 0.93364 0.88526 1.21585 1.03769 0.96605 1.00488 1.21257 0.93187 0.99877 0.94868 1.21208 0.99723 0.95947 1.02285 1.20217 0.97153 0.95550 0.95571 1.25216 0.97572 0.91036 1.05977 1.86493 1.69622 1.28290 1.51711 0.85042 0.78394 0.77352 0.77385 1.17863 1.20238 1.17022 1.20351 0.95345 1.01370 0.99480 1.28194 0.90073 1.07961 1.17772 0.91059 0.90522 0.90302 0.92628 0.91002 0.91933 0.89379 0.89892 0.90411 0.92222 0.91084 0.92015 0.76383 0.85396 0.85364 0.92088 0.92114 0.89820 0.89798 0.82871 0.82705 0.84710 0.86259 0.76192 0.86019 0.91012 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.41 8.65 113.37 0.98 3.39 16 2 Si 1.09 -4.96 11.99 68.60 0.82 -4.13 16 3 C -0.47 -0.81 8.65 113.37 0.98 0.17 16 4 C -0.41 1.63 5.04 72.30 0.36 1.99 16 5 C -0.10 0.06 5.74 30.78 0.18 0.23 16 6 C 0.03 -0.02 5.38 86.28 0.46 0.44 16 7 N -0.31 -0.59 4.15 -334.14 -1.39 -1.98 16 8 N -0.58 0.30 4.71 -173.53 -0.82 -0.51 16 9 C 0.52 1.93 7.93 87.66 0.70 2.63 16 10 O -0.57 -8.66 16.31 -3.03 -0.05 -8.71 16 11 C -0.12 0.67 5.70 29.85 0.17 0.84 16 12 C -0.10 -0.07 4.87 30.60 0.15 0.07 16 13 C 0.06 -0.12 4.74 71.98 0.34 0.22 16 14 O -0.34 -2.12 10.14 -92.46 -0.94 -3.06 16 15 C 0.12 0.62 6.69 22.51 0.15 0.77 16 16 C -0.21 -0.02 9.04 22.37 0.20 0.18 16 17 C -0.07 0.09 10.04 22.26 0.22 0.31 16 18 C -0.17 -0.11 8.67 22.28 0.19 0.08 16 19 C -0.08 -0.27 5.35 -19.88 -0.11 -0.37 16 20 C -0.09 -0.11 2.80 71.24 0.20 0.09 16 21 O -0.55 -1.70 12.83 -148.98 -1.91 -3.61 16 22 Si 0.99 -0.84 25.14 68.60 1.72 0.89 16 23 H -0.25 0.05 7.11 99.48 0.71 0.76 16 24 H -0.28 -0.77 7.11 99.48 0.71 -0.06 16 25 H -0.25 0.45 7.04 99.48 0.70 1.15 16 26 C -0.15 -0.95 9.62 22.36 0.22 -0.73 16 27 C -0.27 0.60 4.85 127.53 0.62 1.21 16 28 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16 29 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 30 H 0.08 -0.52 7.96 -2.39 -0.02 -0.54 16 31 H 0.05 0.35 7.96 -2.38 -0.02 0.33 16 32 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 33 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 34 H 0.09 -0.54 7.99 -2.39 -0.02 -0.56 16 35 H 0.08 -0.33 7.99 -2.39 -0.02 -0.35 16 36 H 0.08 -0.14 8.14 -2.38 -0.02 -0.16 16 37 H 0.06 0.20 7.96 -2.39 -0.02 0.18 16 38 H 0.07 0.02 8.03 -2.38 -0.02 0.00 16 39 H 0.06 -0.29 7.78 -2.39 -0.02 -0.31 16 40 H 0.40 -3.01 8.83 -215.50 -1.90 -4.91 16 41 H 0.13 -1.44 8.14 -2.39 -0.02 -1.46 16 42 H 0.13 -1.44 8.14 -2.39 -0.02 -1.46 16 43 H 0.06 0.33 8.10 -2.39 -0.02 0.31 16 44 H 0.06 0.33 8.10 -2.39 -0.02 0.31 16 45 H 0.08 -0.50 7.65 -2.39 -0.02 -0.52 16 46 H 0.08 -0.50 7.68 -2.39 -0.02 -0.52 16 47 H 0.15 -0.85 6.30 -2.91 -0.02 -0.87 16 48 H 0.16 -1.06 8.06 -2.92 -0.02 -1.08 16 49 H 0.14 -0.36 4.86 -2.91 -0.01 -0.37 16 50 H 0.12 0.05 7.96 -2.39 -0.02 0.03 16 51 H 0.39 -1.46 8.70 -74.06 -0.64 -2.10 16 52 H 0.12 0.98 8.06 -2.91 -0.02 0.96 16 53 H 0.07 -0.44 7.92 -2.39 -0.02 -0.46 16 54 H 0.08 -0.02 7.99 -2.39 -0.02 -0.04 16 Total: 0.00 -24.56 432.44 2.55 -22.00 By element: Atomic # 1 Polarization: -11.50 SS G_CDS: -0.91 Total: -12.41 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 6.02 Total: 11.53 kcal Atomic # 7 Polarization: -0.29 SS G_CDS: -2.20 Total: -2.49 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -2.90 Total: -15.38 kcal Atomic # 14 Polarization: -5.79 SS G_CDS: 2.55 Total: -3.25 kcal Total: -24.56 2.55 -22.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_4549616.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.785 kcal (2) G-P(sol) polarization free energy of solvation -24.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds