Wall clock time and date at job start Sun Mar 7 2021 09:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86291 * 109.98714 * 2 1 4 4 C 1.87529 * 110.00219 * 121.31566 * 2 1 3 5 5 C 1.53928 * 106.84979 * 163.09379 * 4 2 1 6 6 C 1.52625 * 109.31283 * 302.79454 * 5 4 2 7 7 N 1.46359 * 111.88752 * 76.52615 * 6 5 4 8 8 N 1.36596 * 110.99640 * 156.80603 * 7 6 5 9 9 C 1.34780 * 119.99580 * 235.58041 * 8 7 6 10 10 O 1.21612 * 119.99913 * 354.78000 * 9 8 7 11 11 C 1.47376 * 119.99946 * 174.77842 * 9 8 7 12 12 C 1.36422 * 127.19181 * 180.02562 * 11 9 8 13 13 C 1.50700 * 125.80290 * 359.97438 * 12 11 9 14 14 O 1.42901 * 109.46692 * 89.99972 * 13 12 11 15 15 C 1.35906 * 117.00023 * 180.02562 * 14 13 12 16 16 C 1.38731 * 120.05088 * 359.72562 * 15 14 13 17 17 C 1.38148 * 119.94187 * 179.74338 * 16 15 14 18 18 C 1.38266 * 120.05242 * 0.51184 * 17 16 15 19 19 C 1.50702 * 119.94290 * 179.74327 * 18 17 16 20 20 O 1.42896 * 109.47100 * 245.02349 * 19 18 17 21 21 Si 1.86306 * 109.47166 * 5.01900 * 19 18 17 22 22 H 1.48501 * 109.47020 * 59.99746 * 21 19 18 23 23 H 1.48497 * 109.47184 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47121 * 300.00343 * 21 19 18 25 25 C 1.38260 * 120.11419 * 359.76530 * 18 17 16 26 26 C 1.38150 * 120.05666 * 359.97438 * 25 18 17 27 27 O 1.33657 * 108.39740 * 180.02562 * 12 11 9 28 28 C 1.34213 * 110.90747 * 359.97438 * 27 12 11 29 29 C 1.34182 * 109.12611 * 359.70813 * 28 27 12 30 30 C 1.47732 * 111.30232 * 280.97368 * 7 6 5 31 31 H 1.09001 * 109.47210 * 298.68629 * 1 2 3 32 32 H 1.09003 * 109.46976 * 58.68698 * 1 2 3 33 33 H 1.09000 * 109.47604 * 178.68368 * 1 2 3 34 34 H 1.09010 * 109.47385 * 181.31308 * 3 2 1 35 35 H 1.08994 * 109.47389 * 301.31177 * 3 2 1 36 36 H 1.08996 * 109.47127 * 61.31541 * 3 2 1 37 37 H 1.09008 * 109.97387 * 43.76027 * 4 2 1 38 38 H 1.09004 * 110.05062 * 282.47593 * 4 2 1 39 39 H 1.09005 * 109.49581 * 182.84402 * 5 4 2 40 40 H 1.08999 * 109.49341 * 62.74860 * 5 4 2 41 41 H 1.08996 * 108.99497 * 315.90328 * 6 5 4 42 42 H 1.08996 * 108.92976 * 197.09960 * 6 5 4 43 43 H 0.96992 * 120.00596 * 55.31034 * 8 7 6 44 44 H 1.08996 * 109.47365 * 209.99815 * 13 12 11 45 45 H 1.09004 * 109.47083 * 330.00427 * 13 12 11 46 46 H 1.07997 * 120.03217 * 359.97438 * 16 15 14 47 47 H 1.08001 * 119.97013 * 180.22998 * 17 16 15 48 48 H 1.08998 * 109.47180 * 125.01796 * 19 18 17 49 49 H 0.96701 * 114.00490 * 60.00304 * 20 19 18 50 50 H 1.08005 * 119.97138 * 179.97438 * 25 18 17 51 51 H 1.07996 * 120.02944 * 179.97438 * 26 25 18 52 52 H 1.08001 * 125.43799 * 180.02562 * 28 27 12 53 53 H 1.08001 * 127.02407 * 180.26748 * 29 28 27 54 54 H 1.08993 * 109.94599 * 179.68204 * 30 7 6 55 55 H 1.08996 * 109.94594 * 300.94313 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4997 1.7507 0.0000 4 6 2.5044 -0.9159 1.5055 5 6 3.9815 -1.2492 1.2291 6 6 4.0830 -2.0639 -0.0576 7 7 3.9262 -1.2262 -1.2475 8 7 4.5042 -1.8118 -2.3379 9 6 5.4371 -1.1446 -3.0457 10 8 5.6960 0.0118 -2.7724 11 6 6.1435 -1.8165 -4.1510 12 6 7.1070 -1.2853 -4.9577 13 6 7.6488 0.1186 -4.8771 14 8 8.7697 0.1464 -3.9912 15 6 9.3794 1.3466 -3.8049 16 6 8.9119 2.4733 -4.4658 17 6 9.5300 3.6932 -4.2707 18 6 10.6203 3.7898 -3.4259 19 6 11.2963 5.1208 -3.2194 20 8 12.6277 5.0639 -3.7352 21 14 10.3407 6.4478 -4.1121 22 1 8.9570 6.5069 -3.5762 23 1 11.0072 7.7592 -3.9091 24 1 10.2965 6.1349 -5.5631 25 6 11.0916 2.6674 -2.7706 26 6 10.4737 1.4461 -2.9581 27 8 7.4879 -2.2214 -5.8324 28 6 6.8105 -3.3634 -5.6371 29 6 5.9620 -3.2012 -4.6104 30 6 2.5042 -0.9183 -1.5035 31 1 -0.3634 0.4933 0.9015 32 1 -0.3633 0.5341 -0.8780 33 1 -0.3634 -1.0274 -0.0236 34 1 3.5895 1.7410 -0.0236 35 1 2.1221 2.2747 -0.8779 36 1 2.1604 2.2607 0.9015 37 1 1.9365 -1.8347 1.6523 38 1 2.4244 -0.2836 2.3898 39 1 4.3852 -1.8287 2.0594 40 1 4.5488 -0.3249 1.1202 41 1 3.3053 -2.8275 -0.0562 42 1 5.0577 -2.5504 -0.0921 43 1 4.2462 -2.7092 -2.6004 44 1 7.9614 0.4449 -5.8690 45 1 6.8730 0.7865 -4.5025 46 1 8.0631 2.3975 -5.1293 47 1 9.1641 4.5713 -4.7821 48 1 11.3287 5.3505 -2.1544 49 1 12.6753 4.8633 -4.6800 50 1 11.9437 2.7454 -2.1115 51 1 10.8425 0.5695 -2.4463 52 1 6.9329 -4.2701 -6.2111 53 1 5.2820 -3.9366 -4.2062 54 1 2.4135 -0.2901 -2.3895 55 1 1.9428 -1.8422 -1.6423 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_4549634.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:19:29 Heat of formation + Delta-G solvation = -54.748657 kcal Electronic energy + Delta-G solvation = -36174.272141 eV Core-core repulsion = 31496.492573 eV Total energy + Delta-G solvation = -4677.779568 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 404.177 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.75322 -41.32116 -40.89234 -39.26197 -38.52004 -37.17644 -35.02207 -34.13148 -32.90830 -32.01279 -31.53956 -31.39231 -29.34081 -28.35943 -27.96869 -27.54491 -26.21209 -25.51195 -23.99675 -23.75399 -22.45253 -22.21083 -21.80271 -21.00382 -19.55306 -19.29582 -18.34855 -18.27446 -17.46311 -17.28491 -17.03141 -16.85742 -16.71175 -16.47077 -16.09654 -15.83237 -15.62358 -15.38614 -15.12937 -14.99485 -14.84210 -14.65013 -14.48115 -14.38585 -14.21602 -13.98392 -13.89975 -13.81023 -13.72978 -13.50911 -13.49723 -13.19966 -13.13403 -13.12577 -13.00339 -12.29997 -12.21684 -12.08261 -12.06890 -12.04986 -11.97768 -11.57685 -11.40286 -10.99285 -10.89904 -10.80818 -10.38204 -10.34196 -10.20517 -10.07568 -9.87816 -9.72503 -9.26367 -0.05986 0.24066 0.27282 1.00788 1.19182 1.33301 1.44808 1.53038 1.56454 1.82279 1.90471 1.91429 2.10159 2.14782 2.45574 2.61313 2.62456 3.30795 3.34844 3.57160 3.58656 3.64047 3.68345 3.79508 3.87927 3.91417 3.99678 4.08066 4.14313 4.25202 4.40251 4.41170 4.41945 4.51710 4.56805 4.57032 4.67079 4.69856 4.73462 4.76565 4.79450 4.80640 4.83944 4.84392 4.91331 4.92751 5.08946 5.12253 5.21979 5.22931 5.29349 5.45436 5.46742 5.57240 5.65172 5.67278 5.80035 5.84313 6.15841 6.23022 6.35827 6.72977 7.45106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.092 2.908 3 C -0.464 4.464 4 C -0.412 4.412 5 C -0.103 4.103 6 C 0.026 3.974 7 N -0.299 5.299 8 N -0.569 5.569 9 C 0.598 3.402 10 O -0.551 6.551 11 C -0.220 4.220 12 C 0.044 3.956 13 C 0.135 3.865 14 O -0.321 6.321 15 C 0.124 3.876 16 C -0.207 4.207 17 C -0.090 4.090 18 C -0.160 4.160 19 C -0.072 4.072 20 O -0.552 6.552 21 Si 0.979 3.021 22 H -0.262 1.262 23 H -0.273 1.273 24 H -0.249 1.249 25 C -0.052 4.052 26 C -0.161 4.161 27 O -0.175 6.175 28 C -0.008 4.008 29 C -0.199 4.199 30 C -0.271 4.271 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.393 0.607 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.144 0.856 47 H 0.137 0.863 48 H 0.124 0.876 49 H 0.388 0.612 50 H 0.147 0.853 51 H 0.136 0.864 52 H 0.254 0.746 53 H 0.189 0.811 54 H 0.075 0.925 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 -5.534 -1.127 7.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.280 2.720 3 C -0.570 4.570 4 C -0.498 4.498 5 C -0.142 4.142 6 C -0.101 4.101 7 N -0.116 5.116 8 N -0.312 5.312 9 C 0.387 3.613 10 O -0.428 6.428 11 C -0.226 4.226 12 C -0.009 4.009 13 C 0.061 3.939 14 O -0.236 6.236 15 C 0.079 3.921 16 C -0.226 4.226 17 C -0.108 4.108 18 C -0.161 4.161 19 C -0.183 4.183 20 O -0.359 6.359 21 Si 0.804 3.196 22 H -0.186 1.186 23 H -0.198 1.198 24 H -0.173 1.173 25 C -0.070 4.070 26 C -0.180 4.180 27 O -0.071 6.071 28 C -0.074 4.074 29 C -0.218 4.218 30 C -0.442 4.442 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.233 0.767 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.161 0.839 47 H 0.154 0.846 48 H 0.142 0.858 49 H 0.237 0.763 50 H 0.165 0.835 51 H 0.154 0.846 52 H 0.270 0.730 53 H 0.206 0.794 54 H 0.094 0.906 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.391 -3.687 -0.866 5.799 hybrid contribution -0.657 -1.669 -0.705 1.928 sum -5.049 -5.356 -1.572 7.526 Atomic orbital electron populations 1.26140 1.19935 1.05138 1.04966 0.78314 0.65257 0.64865 0.63540 1.26333 1.05970 1.20680 1.04006 1.26418 0.99856 1.08881 1.14632 1.21206 0.97413 1.00432 0.95108 1.22586 1.02569 0.95436 0.89529 1.62948 1.14870 1.39502 0.94239 1.45193 1.40672 1.18072 1.27298 1.17271 0.78249 0.85229 0.80584 1.90752 1.65464 1.17814 1.68793 1.21298 1.03651 0.96930 1.00713 1.21982 0.96303 0.91233 0.91420 1.21130 0.88742 0.88923 0.95150 1.86048 1.44124 1.29788 1.63619 1.19182 0.93036 0.84179 0.95678 1.21367 1.03833 0.92645 1.04743 1.21039 0.95089 0.97409 0.97222 1.20368 0.98170 0.97116 1.00398 1.24928 0.88478 0.98979 1.05918 1.86479 1.25036 1.93981 1.30420 0.85278 0.77930 0.76772 0.79670 1.18612 1.19839 1.17299 1.20992 0.98423 0.90327 0.97291 1.20677 0.96389 0.99688 1.01205 1.83801 1.54290 1.20472 1.48518 1.24917 0.93784 0.88678 1.00018 1.23227 1.04570 0.94442 0.99516 1.28295 0.90258 1.07799 1.17853 0.90341 0.91221 0.90356 0.92544 0.92059 0.90871 0.89274 0.89625 0.90041 0.92006 0.91657 0.90778 0.76698 0.88123 0.87688 0.83882 0.84593 0.85850 0.76251 0.83508 0.84638 0.73027 0.79378 0.90593 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.14 8.65 113.37 0.98 3.12 16 2 Si 1.09 -4.33 11.99 68.60 0.82 -3.51 16 3 C -0.46 -0.94 8.65 113.37 0.98 0.04 16 4 C -0.41 1.70 5.03 72.30 0.36 2.06 16 5 C -0.10 0.09 5.74 30.78 0.18 0.27 16 6 C 0.03 -0.01 5.38 86.28 0.46 0.45 16 7 N -0.30 -1.04 4.15 -334.15 -1.39 -2.43 16 8 N -0.57 -1.92 4.71 -175.92 -0.83 -2.75 16 9 C 0.60 5.52 7.91 86.65 0.69 6.21 16 10 O -0.55 -9.25 15.18 -4.07 -0.06 -9.32 16 11 C -0.22 -1.19 6.31 -18.99 -0.12 -1.31 16 12 C 0.04 0.28 7.00 25.26 0.18 0.46 16 13 C 0.13 0.90 4.74 71.24 0.34 1.24 16 14 O -0.32 -3.50 10.12 -92.50 -0.94 -4.44 16 15 C 0.12 1.14 6.69 22.50 0.15 1.29 16 16 C -0.21 -1.27 9.04 22.37 0.20 -1.07 16 17 C -0.09 -0.39 8.66 22.25 0.19 -0.19 16 18 C -0.16 -0.62 5.35 -19.85 -0.11 -0.73 16 19 C -0.07 -0.08 2.80 71.24 0.20 0.12 16 20 O -0.55 -1.05 12.83 -148.98 -1.91 -2.96 16 21 Si 0.98 0.65 25.14 68.60 1.72 2.37 16 22 H -0.26 -0.67 7.11 99.48 0.71 0.04 16 23 H -0.27 -1.02 7.11 99.48 0.71 -0.31 16 24 H -0.25 0.00 7.04 99.48 0.70 0.70 16 25 C -0.05 -0.25 9.68 22.25 0.22 -0.04 16 26 C -0.16 -1.21 9.99 22.37 0.22 -0.99 16 27 O -0.18 -0.58 10.52 4.45 0.05 -0.54 16 28 C -0.01 0.03 12.03 66.89 0.80 0.84 16 29 C -0.20 0.50 10.60 23.65 0.25 0.75 16 30 C -0.27 0.11 4.86 127.53 0.62 0.73 16 31 H 0.08 -0.39 7.96 -2.39 -0.02 -0.40 16 32 H 0.07 -0.28 7.96 -2.39 -0.02 -0.29 16 33 H 0.08 -0.47 7.96 -2.39 -0.02 -0.49 16 34 H 0.06 0.37 7.96 -2.38 -0.02 0.35 16 35 H 0.06 0.17 7.96 -2.39 -0.02 0.15 16 36 H 0.07 0.02 7.96 -2.39 -0.02 0.01 16 37 H 0.09 -0.57 7.99 -2.38 -0.02 -0.59 16 38 H 0.08 -0.39 8.00 -2.39 -0.02 -0.41 16 39 H 0.08 -0.20 8.14 -2.38 -0.02 -0.22 16 40 H 0.06 0.17 7.96 -2.39 -0.02 0.15 16 41 H 0.07 -0.30 7.78 -2.39 -0.02 -0.31 16 42 H 0.07 0.06 8.03 -2.39 -0.02 0.04 16 43 H 0.39 -1.12 8.01 -215.51 -1.73 -2.85 16 44 H 0.10 0.17 7.65 -2.39 -0.02 0.15 16 45 H 0.11 0.88 6.02 -2.38 -0.01 0.86 16 46 H 0.14 0.36 6.30 -2.91 -0.02 0.34 16 47 H 0.14 0.11 4.86 -2.91 -0.01 0.10 16 48 H 0.12 -0.06 7.96 -2.39 -0.02 -0.08 16 49 H 0.39 -1.72 8.70 -74.06 -0.64 -2.36 16 50 H 0.15 0.26 8.06 -2.91 -0.02 0.23 16 51 H 0.14 0.80 8.06 -2.91 -0.02 0.78 16 52 H 0.25 -3.31 8.06 -2.91 -0.02 -3.34 16 53 H 0.19 -1.77 7.75 -2.91 -0.02 -1.79 16 54 H 0.08 0.20 7.99 -2.39 -0.02 0.18 16 55 H 0.07 -0.28 7.92 -2.39 -0.02 -0.30 16 Total: 0.00 -23.58 448.01 3.57 -20.01 By element: Atomic # 1 Polarization: -8.98 SS G_CDS: -0.70 Total: -9.68 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 6.80 Total: 13.23 kcal Atomic # 7 Polarization: -2.96 SS G_CDS: -2.21 Total: -5.18 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -2.86 Total: -17.25 kcal Atomic # 14 Polarization: -3.68 SS G_CDS: 2.55 Total: -1.14 kcal Total: -23.58 3.57 -20.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_4549634.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.735 kcal (2) G-P(sol) polarization free energy of solvation -23.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds