Wall clock time and date at job start Sun Mar 7 2021 09:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36000 * 117.00049 * 2 1 4 4 C 1.38517 * 120.07332 * 0.32389 * 3 2 1 5 5 C 1.38289 * 119.99989 * 180.30044 * 4 3 2 6 6 C 1.50698 * 119.92915 * 179.69997 * 5 4 3 7 7 O 1.42901 * 109.47091 * 104.97491 * 6 5 4 8 8 Si 1.86304 * 109.47024 * 344.97565 * 6 5 4 9 9 H 1.48500 * 109.46891 * 60.00209 * 8 6 5 10 10 H 1.48501 * 109.46950 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47140 * 299.99767 * 8 6 5 12 12 C 1.38209 * 120.14485 * 359.67350 * 5 4 3 13 13 N 1.48000 * 119.92719 * 180.02562 * 12 5 4 14 14 O 1.21799 * 120.00097 * 179.97438 * 13 12 5 15 15 O 1.21796 * 120.00130 * 359.97438 * 13 12 5 16 16 C 1.38285 * 120.14411 * 0.02562 * 12 5 4 17 17 C 1.38521 * 120.00365 * 0.02562 * 16 12 5 18 18 O 1.35993 * 120.07469 * 179.97438 * 17 16 12 19 19 C 1.42898 * 116.99996 * 0.02562 * 18 17 16 20 20 C 1.50705 * 109.47002 * 180.02562 * 19 18 17 21 21 O 1.21288 * 119.99936 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99921 * 180.02562 * 20 19 18 23 23 N 1.36598 * 119.99859 * 174.99425 * 22 20 19 24 24 C 1.46357 * 111.00406 * 111.10114 * 23 22 20 25 25 C 1.52623 * 111.89355 * 203.19860 * 24 23 22 26 26 C 1.53932 * 109.30848 * 283.47396 * 25 24 23 27 27 Si 1.87527 * 106.84843 * 57.20109 * 26 25 24 28 28 C 1.86306 * 110.00241 * 196.89984 * 27 26 25 29 29 C 1.86300 * 109.99991 * 75.50517 * 27 26 25 30 30 C 1.47726 * 110.99921 * 235.44973 * 23 22 20 31 31 H 1.08998 * 109.46904 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46453 * 300.00017 * 1 2 3 33 33 H 1.08993 * 109.46912 * 59.99695 * 1 2 3 34 34 H 1.08009 * 120.00250 * 359.97438 * 4 3 2 35 35 H 1.08994 * 109.46954 * 224.97220 * 6 5 4 36 36 H 0.96698 * 114.00090 * 180.02562 * 7 6 5 37 37 H 1.07998 * 119.99918 * 180.02562 * 16 12 5 38 38 H 1.08994 * 109.46988 * 299.99834 * 19 18 17 39 39 H 1.08995 * 109.47061 * 60.00073 * 19 18 17 40 40 H 0.96995 * 119.99836 * 354.98941 * 22 20 19 41 41 H 1.09008 * 108.99317 * 323.81477 * 24 23 22 42 42 H 1.08998 * 108.99771 * 82.57127 * 24 23 22 43 43 H 1.08993 * 109.50094 * 163.52586 * 25 24 23 44 44 H 1.08996 * 109.52867 * 43.43829 * 25 24 23 45 45 H 1.09005 * 109.97877 * 297.87169 * 26 25 24 46 46 H 1.08995 * 110.05733 * 176.58352 * 26 25 24 47 47 H 1.08996 * 109.46743 * 177.27395 * 28 27 26 48 48 H 1.08992 * 109.47219 * 297.27438 * 28 27 26 49 49 H 1.08997 * 109.46609 * 57.27832 * 28 27 26 50 50 H 1.08999 * 109.47061 * 302.72490 * 29 27 26 51 51 H 1.09001 * 109.47179 * 62.72808 * 29 27 26 52 52 H 1.08998 * 109.47228 * 182.72440 * 29 27 26 53 53 H 1.09000 * 109.94544 * 294.89146 * 30 23 22 54 54 H 1.09003 * 109.94764 * 56.13867 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2936 2.3744 0.0068 5 6 1.9229 3.6058 0.0005 6 6 1.1022 4.8697 0.0010 7 8 1.1410 5.4622 1.3008 8 14 -0.6609 4.4654 -0.4448 9 1 -1.2172 3.5135 0.5500 10 1 -1.4698 5.7108 -0.4437 11 1 -0.7012 3.8496 -1.7955 12 6 3.3030 3.6799 -0.0057 13 7 3.9716 5.0002 -0.0119 14 8 5.1877 5.0671 -0.0169 15 8 3.3057 6.0200 -0.0119 16 6 4.0606 2.5230 -0.0063 17 6 3.4364 1.2863 -0.0011 18 8 4.1800 0.1477 -0.0021 19 6 5.6008 0.3006 -0.0081 20 6 6.2523 -1.0583 -0.0090 21 8 5.5673 -2.0592 -0.0054 22 7 7.5961 -1.1613 -0.0138 23 7 8.1874 -2.3884 0.0886 24 6 8.8447 -2.7603 -1.1651 25 6 9.0081 -4.2722 -1.2953 26 6 10.1723 -4.7371 -0.4020 27 14 9.7704 -4.1862 1.3449 28 6 11.3065 -4.2359 2.3980 29 6 8.4590 -5.2896 2.0752 30 6 9.1333 -2.4273 1.2226 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 0.2149 2.3193 0.0116 35 1 1.5106 5.5683 -0.7291 36 1 0.6326 6.2814 1.3749 37 1 5.1388 2.5836 -0.0107 38 1 5.9034 0.8488 -0.9002 39 1 5.9106 0.8519 0.8797 40 1 8.1433 -0.3641 -0.0901 41 1 8.2477 -2.3947 -2.0007 42 1 9.8284 -2.2925 -1.2023 43 1 9.2219 -4.5269 -2.3333 44 1 8.0888 -4.7664 -0.9813 45 1 11.1029 -4.2760 -0.7330 46 1 10.2613 -5.8228 -0.4389 47 1 11.0737 -3.8684 3.3975 48 1 11.6692 -5.2616 2.4633 49 1 12.0750 -3.6065 1.9494 50 1 7.5740 -5.2723 1.4391 51 1 8.8382 -6.3093 2.1424 52 1 8.1975 -4.9329 3.0714 53 1 9.9620 -1.7435 1.0391 54 1 8.6204 -2.1526 2.1443 RHF calculation, no. of doubly occupied orbitals= 75 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_4549636.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:19:49 Heat of formation + Delta-G solvation = -95.883668 kcal Electronic energy + Delta-G solvation = -38246.583651 eV Core-core repulsion = 33120.682321 eV Total energy + Delta-G solvation = -5125.901330 eV No. of doubly occupied orbitals = 75 Molecular weight (most abundant/longest-lived isotopes) = 413.171 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.40118 -42.14077 -41.15725 -39.91045 -39.15732 -38.39737 -37.73122 -37.12286 -34.99548 -32.82875 -32.68194 -31.99220 -29.55957 -29.29658 -28.79227 -28.35091 -27.91782 -27.52264 -25.85724 -24.78122 -23.81024 -23.09989 -21.96269 -21.78354 -20.74791 -19.89902 -19.49329 -18.93903 -18.87552 -18.43160 -18.28210 -17.82326 -17.75440 -17.60262 -16.97528 -16.60209 -16.45307 -16.05654 -15.75660 -15.37681 -15.27180 -15.02436 -14.90852 -14.75836 -14.41232 -14.38291 -14.19767 -13.97394 -13.91458 -13.80337 -13.51123 -13.49771 -13.19078 -13.11897 -12.97705 -12.92732 -12.68544 -12.60413 -12.42635 -12.40066 -12.34900 -12.19670 -12.08105 -12.03626 -11.97577 -11.80164 -11.37715 -10.82214 -10.78239 -10.51259 -10.44390 -10.25056 -10.23489 -9.67424 -9.52656 -1.33543 -0.46720 0.17704 0.30067 0.99307 1.00561 1.38905 1.43782 1.44508 1.70914 1.81071 1.82599 1.86812 1.89317 1.95701 2.27548 2.61645 2.90297 3.09712 3.26520 3.30407 3.43060 3.59135 3.73096 3.83576 3.89008 3.92593 4.00059 4.01770 4.09461 4.16067 4.17698 4.22609 4.33050 4.42890 4.53122 4.60031 4.65622 4.67807 4.71096 4.73561 4.80200 4.81554 4.85132 4.86222 4.92306 5.09124 5.28007 5.29874 5.47323 5.51847 5.59084 5.66177 5.78936 5.98647 6.15019 6.33086 6.53652 6.75324 7.42381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.306 6.306 3 C 0.167 3.833 4 C -0.182 4.182 5 C 0.000 4.000 6 C -0.102 4.102 7 O -0.551 6.551 8 Si 0.967 3.033 9 H -0.244 1.244 10 H -0.242 1.242 11 H -0.246 1.246 12 C -0.042 4.042 13 N 0.037 4.963 14 O -0.195 6.195 15 O -0.145 6.145 16 C -0.109 4.109 17 C 0.103 3.897 18 O -0.290 6.290 19 C 0.032 3.968 20 C 0.530 3.470 21 O -0.546 6.546 22 N -0.571 5.571 23 N -0.302 5.302 24 C 0.026 3.974 25 C -0.104 4.104 26 C -0.416 4.416 27 Si 1.097 2.903 28 C -0.454 4.454 29 C -0.467 4.467 30 C -0.270 4.270 31 H 0.126 0.874 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.177 0.823 35 H 0.102 0.898 36 H 0.404 0.596 37 H 0.188 0.812 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.400 0.600 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.055 0.945 51 H 0.071 0.929 52 H 0.062 0.938 53 H 0.076 0.924 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 0.185 -1.189 1.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.217 6.217 3 C 0.118 3.882 4 C -0.201 4.201 5 C -0.002 4.002 6 C -0.210 4.210 7 O -0.361 6.361 8 Si 0.786 3.214 9 H -0.168 1.168 10 H -0.166 1.166 11 H -0.170 1.170 12 C -0.126 4.126 13 N 0.552 4.448 14 O -0.402 6.402 15 O -0.365 6.365 16 C -0.128 4.128 17 C 0.055 3.945 18 O -0.202 6.202 19 C -0.046 4.046 20 C 0.315 3.685 21 O -0.420 6.420 22 N -0.318 5.318 23 N -0.118 5.118 24 C -0.101 4.101 25 C -0.143 4.143 26 C -0.502 4.502 27 Si 1.285 2.715 28 C -0.563 4.563 29 C -0.573 4.573 30 C -0.441 4.441 31 H 0.145 0.855 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.194 0.806 35 H 0.119 0.881 36 H 0.255 0.745 37 H 0.205 0.795 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.241 0.759 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.075 0.925 51 H 0.090 0.910 52 H 0.082 0.918 53 H 0.094 0.906 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.814 -2.569 -1.182 2.943 hybrid contribution 1.080 2.072 -0.108 2.339 sum 0.266 -0.497 -1.290 1.408 Atomic orbital electron populations 1.23717 0.75178 1.07027 1.03365 1.86323 1.24374 1.24619 1.86430 1.18647 0.89381 0.86123 0.94047 1.21157 1.01999 0.88991 1.07972 1.19188 0.90654 0.96009 0.94351 1.25184 1.10795 0.93869 0.91197 1.86397 1.77238 1.45054 1.27429 0.85488 0.73196 0.82124 0.80556 1.16800 1.16565 1.16981 1.20509 0.92441 0.82428 1.17260 1.43505 1.00837 1.03122 0.97319 1.94519 0.96270 1.94014 1.55372 1.94475 1.64589 1.25055 1.52351 1.20918 1.03104 0.88014 1.00779 1.17899 0.88488 0.85279 1.02797 1.86292 1.18406 1.26786 1.88741 1.22829 0.78763 0.95598 1.07458 1.20219 0.81804 0.90382 0.76060 1.90759 1.63316 1.39789 1.48129 1.45224 1.05286 1.05478 1.75775 1.62958 1.33127 1.11066 1.04691 1.22589 0.98521 0.98102 0.90918 1.21199 0.98908 0.93201 1.00979 1.26470 1.00881 1.05951 1.16849 0.78226 0.64616 0.62400 0.66238 1.26150 1.15193 1.05184 1.09745 1.26370 1.13368 1.10902 1.06642 1.28257 0.98732 1.22045 0.95086 0.85538 0.90551 0.90221 0.80598 0.88065 0.74503 0.79541 0.85100 0.85367 0.75931 0.91167 0.91709 0.90461 0.92104 0.89383 0.89888 0.91039 0.90560 0.90327 0.92541 0.91018 0.91844 0.90606 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -1.25 10.28 -79.71 -0.82 -2.07 16 3 C 0.17 0.55 6.70 22.57 0.15 0.71 16 4 C -0.18 -0.08 7.65 22.35 0.17 0.09 16 5 C 0.00 0.00 5.29 -19.86 -0.11 -0.11 16 6 C -0.10 0.02 1.73 71.24 0.12 0.14 16 7 O -0.55 -0.55 11.77 -129.63 -1.53 -2.07 16 8 Si 0.97 -4.14 25.49 68.60 1.75 -2.39 16 9 H -0.24 1.11 6.73 99.48 0.67 1.78 16 10 H -0.24 1.01 7.11 99.48 0.71 1.72 16 11 H -0.25 0.97 7.11 99.48 0.71 1.68 16 12 C -0.04 -0.21 6.85 36.38 0.25 0.04 16 13 N 0.04 0.33 4.45 -46.47 -0.21 0.12 16 14 O -0.19 -1.96 18.44 18.89 0.35 -1.61 16 15 O -0.15 -1.39 14.62 25.11 0.37 -1.03 16 16 C -0.11 -0.14 8.54 22.35 0.19 0.05 16 17 C 0.10 0.35 6.70 22.57 0.15 0.51 16 18 O -0.29 -1.67 9.46 -67.07 -0.63 -2.31 16 19 C 0.03 -0.07 5.22 71.24 0.37 0.30 16 20 C 0.53 2.49 8.01 87.66 0.70 3.19 16 21 O -0.55 -8.94 16.83 15.98 0.27 -8.67 16 22 N -0.57 0.49 4.71 -173.52 -0.82 -0.32 16 23 N -0.30 -0.38 4.15 -334.13 -1.39 -1.76 16 24 C 0.03 -0.03 5.38 86.28 0.46 0.43 16 25 C -0.10 0.09 5.74 30.78 0.18 0.27 16 26 C -0.42 1.84 5.04 72.30 0.36 2.20 16 27 Si 1.10 -5.87 11.99 68.60 0.82 -5.05 16 28 C -0.45 2.64 8.65 113.37 0.98 3.62 16 29 C -0.47 -0.38 8.65 113.37 0.98 0.60 16 30 C -0.27 0.90 4.85 127.53 0.62 1.52 16 31 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H 0.08 -0.55 7.65 -2.39 -0.02 -0.57 16 33 H 0.08 -0.65 7.68 -2.39 -0.02 -0.67 16 34 H 0.18 -0.74 3.12 -2.91 -0.01 -0.75 16 35 H 0.10 -0.05 6.07 -2.39 -0.01 -0.06 16 36 H 0.40 -3.09 8.74 -74.06 -0.65 -3.74 16 37 H 0.19 -0.75 5.85 -2.91 -0.02 -0.77 16 38 H 0.13 -1.18 7.66 -2.39 -0.02 -1.20 16 39 H 0.13 -1.04 7.66 -2.39 -0.02 -1.05 16 40 H 0.40 -3.32 8.83 -215.50 -1.90 -5.23 16 41 H 0.07 0.03 8.03 -2.38 -0.02 0.02 16 42 H 0.06 -0.34 7.78 -2.39 -0.02 -0.36 16 43 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 45 H 0.09 -0.58 7.99 -2.38 -0.02 -0.60 16 46 H 0.08 -0.37 7.99 -2.39 -0.02 -0.39 16 47 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 48 H 0.08 -0.42 7.96 -2.39 -0.02 -0.44 16 49 H 0.08 -0.55 7.96 -2.39 -0.02 -0.57 16 50 H 0.06 0.29 7.96 -2.39 -0.02 0.28 16 51 H 0.07 -0.03 7.96 -2.39 -0.02 -0.05 16 52 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 53 H 0.08 -0.55 7.92 -2.39 -0.02 -0.57 16 54 H 0.09 -0.17 7.99 -2.39 -0.02 -0.19 16 Total: 0.00 -29.52 440.93 4.00 -25.52 By element: Atomic # 1 Polarization: -12.16 SS G_CDS: -0.87 Total: -13.03 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 6.70 Total: 14.67 kcal Atomic # 7 Polarization: 0.45 SS G_CDS: -2.41 Total: -1.96 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -2.00 Total: -17.76 kcal Atomic # 14 Polarization: -10.01 SS G_CDS: 2.57 Total: -7.44 kcal Total: -29.52 4.00 -25.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_4549636.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.365 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds