Wall clock time and date at job start Sun Mar 7 2021 09:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86303 * 110.05928 * 2 1 4 4 C 1.87523 * 110.00192 * 238.63917 * 2 1 3 5 5 C 1.53929 * 106.84925 * 196.89969 * 4 2 1 6 6 C 1.52624 * 109.31166 * 57.20448 * 5 4 2 7 7 N 1.46354 * 111.89190 * 283.47796 * 6 5 4 8 8 N 1.36594 * 111.00232 * 203.19765 * 7 6 5 9 9 C 1.34776 * 120.00104 * 111.10152 * 8 7 6 10 10 O 1.21282 * 120.00177 * 354.99397 * 9 8 7 11 11 C 1.50703 * 119.99947 * 174.99238 * 9 8 7 12 12 O 1.42902 * 109.47353 * 179.97438 * 11 9 8 13 13 C 1.35894 * 117.00252 * 180.02562 * 12 11 9 14 14 C 1.38708 * 120.05557 * 0.02562 * 13 12 11 15 15 C 1.38162 * 119.94590 * 179.72584 * 14 13 12 16 16 C 1.38248 * 120.05479 * 359.97369 * 15 14 13 17 17 C 1.50705 * 119.94457 * 180.02562 * 16 15 14 18 18 O 1.42903 * 109.46702 * 245.00255 * 17 16 15 19 19 Si 1.86296 * 109.47113 * 5.00151 * 17 16 15 20 20 H 1.48497 * 109.47279 * 59.99758 * 19 17 16 21 21 H 1.48503 * 109.47407 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47125 * 300.00086 * 19 17 16 23 23 C 1.38286 * 120.11293 * 0.02562 * 16 15 14 24 24 C 1.38128 * 120.05114 * 0.04605 * 23 16 15 25 25 N 1.48003 * 120.02451 * 180.02562 * 24 23 16 26 26 O 1.21809 * 120.00090 * 359.92592 * 25 24 23 27 27 O 1.21802 * 119.99862 * 179.97438 * 25 24 23 28 28 C 1.47724 * 111.30724 * 79.01806 * 7 6 5 29 29 H 1.09002 * 109.47075 * 298.63193 * 1 2 3 30 30 H 1.09001 * 109.47233 * 58.63826 * 1 2 3 31 31 H 1.09000 * 109.46711 * 178.63450 * 1 2 3 32 32 H 1.09003 * 109.46782 * 181.36375 * 3 2 1 33 33 H 1.09000 * 109.47223 * 301.36285 * 3 2 1 34 34 H 1.08998 * 109.47010 * 61.36554 * 3 2 1 35 35 H 1.08998 * 109.97700 * 316.23220 * 4 2 1 36 36 H 1.09003 * 109.97870 * 77.47753 * 4 2 1 37 37 H 1.09002 * 109.50120 * 177.15358 * 5 4 2 38 38 H 1.08998 * 109.49877 * 297.22106 * 5 4 2 39 39 H 1.08999 * 108.99570 * 162.85737 * 6 5 4 40 40 H 1.09004 * 108.99828 * 44.09564 * 6 5 4 41 41 H 0.97000 * 119.99751 * 291.09875 * 8 7 6 42 42 H 1.09002 * 109.46922 * 60.00104 * 11 9 8 43 43 H 1.09003 * 109.47457 * 299.99939 * 11 9 8 44 44 H 1.08002 * 120.03153 * 359.74524 * 14 13 12 45 45 H 1.08002 * 119.97531 * 180.02562 * 15 14 13 46 46 H 1.08991 * 109.47088 * 125.00399 * 17 16 15 47 47 H 0.96696 * 114.00062 * 60.00663 * 18 17 16 48 48 H 1.07997 * 119.97071 * 180.02562 * 23 16 15 49 49 H 1.08997 * 109.94727 * 59.06321 * 28 7 6 50 50 H 1.09003 * 109.95194 * 180.32167 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7500 0.0000 4 6 2.5044 -0.9171 -1.5047 5 6 3.9816 -1.2500 -1.2281 6 6 4.0832 -2.0636 0.0592 7 7 3.9263 -1.2251 1.2485 8 7 4.5044 -1.8095 2.3393 9 6 5.6123 -1.2700 2.8851 10 8 6.1483 -0.3197 2.3553 11 6 6.1852 -1.8475 4.1537 12 8 7.3498 -1.1095 4.5296 13 6 7.9923 -1.5045 5.6601 14 6 7.5121 -2.5803 6.3923 15 6 8.1702 -2.9834 7.5382 16 6 9.3069 -2.3158 7.9550 17 6 10.0232 -2.7580 9.2050 18 8 9.9448 -1.7252 10.1895 19 14 9.2236 -4.3062 9.8642 20 1 9.3050 -5.3795 8.8411 21 1 9.9290 -4.7417 11.0963 22 1 7.7991 -4.0313 10.1810 23 6 9.7877 -1.2430 7.2269 24 6 9.1324 -0.8352 6.0813 25 7 9.6478 0.3127 5.3022 26 8 10.6494 0.8991 5.6717 27 8 9.0698 0.6716 4.2919 28 6 2.5044 -0.9169 1.5042 29 1 -0.3633 0.4924 0.9020 30 1 -0.3634 0.5348 -0.8775 31 1 -0.3633 -1.0274 -0.0245 32 1 3.5917 1.7389 -0.0245 33 1 2.1242 2.2748 -0.8775 34 1 2.1640 2.2602 0.9020 35 1 1.9367 -1.8359 -1.6508 36 1 2.4231 -0.2848 -2.3889 37 1 4.3854 -1.8302 -2.0579 38 1 4.5490 -0.3256 -1.1205 39 1 5.0574 -2.5512 0.0949 40 1 3.3055 -2.8274 0.0586 41 1 4.1175 -2.6129 2.7212 42 1 6.4542 -2.8908 3.9889 43 1 5.4426 -1.7849 4.9492 44 1 6.6246 -3.1026 6.0667 45 1 7.7970 -3.8212 8.1084 46 1 11.0687 -2.9598 8.9725 47 1 9.0415 -1.4933 10.4452 48 1 10.6760 -0.7235 7.5543 49 1 1.9430 -1.8407 1.6439 50 1 2.4135 -0.2879 2.3898 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_4549638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:24:22 Heat of formation + Delta-G solvation = -69.926833 kcal Electronic energy + Delta-G solvation = -33392.252551 eV Core-core repulsion = 28741.696605 eV Total energy + Delta-G solvation = -4650.555946 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 383.156 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.00355 -41.75242 -40.92960 -39.73118 -38.35121 -37.50525 -37.09291 -35.00674 -33.52694 -32.47818 -32.07303 -29.65021 -29.40789 -28.44244 -27.66103 -27.58537 -26.73797 -25.00447 -23.91336 -22.81110 -22.00819 -21.75144 -20.46749 -19.45526 -19.31854 -18.82931 -18.39616 -18.32059 -18.00247 -17.66464 -17.20006 -16.67542 -16.53029 -16.33986 -15.87823 -15.65651 -15.46318 -15.25570 -15.02276 -14.85675 -14.50119 -14.18720 -14.14395 -14.05062 -13.89894 -13.86196 -13.64730 -13.31141 -13.30673 -13.18990 -13.05071 -12.57778 -12.55026 -12.37809 -12.17450 -12.13439 -12.06988 -11.97709 -11.82818 -11.70709 -11.35235 -10.92920 -10.92252 -10.75566 -10.73314 -10.49229 -10.30365 -9.91693 -9.76992 -1.12719 -0.38102 0.39220 0.53173 0.85014 0.90925 1.15790 1.24018 1.46874 1.57218 1.67586 1.72298 1.78294 1.93139 2.12746 2.48118 2.97766 2.99116 3.17250 3.23274 3.28630 3.42670 3.53273 3.56652 3.62968 3.70300 3.89508 4.06116 4.13909 4.17440 4.25346 4.34703 4.42204 4.44613 4.55511 4.59237 4.60875 4.64334 4.66421 4.72422 4.83804 4.90516 4.92742 4.99094 5.21809 5.33567 5.37422 5.43076 5.66728 5.68195 5.71311 6.13868 6.27906 6.29600 6.95984 7.40487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.034 2.966 3 C -0.445 4.445 4 C -0.411 4.411 5 C -0.101 4.101 6 C 0.026 3.974 7 N -0.273 5.273 8 N -0.585 5.585 9 C 0.526 3.474 10 O -0.469 6.469 11 C 0.035 3.965 12 O -0.252 6.252 13 C 0.201 3.799 14 C -0.209 4.209 15 C -0.033 4.033 16 C -0.158 4.158 17 C -0.078 4.078 18 O -0.534 6.534 19 Si 0.948 3.052 20 H -0.247 1.247 21 H -0.245 1.245 22 H -0.249 1.249 23 C 0.013 3.987 24 C -0.075 4.075 25 N 0.028 4.972 26 O -0.176 6.176 27 O -0.117 6.117 28 C -0.259 4.259 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.378 0.622 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.155 0.845 45 H 0.143 0.857 46 H 0.125 0.875 47 H 0.378 0.622 48 H 0.166 0.834 49 H 0.055 0.945 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.207 -8.653 2.483 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.227 2.773 3 C -0.553 4.553 4 C -0.497 4.497 5 C -0.140 4.140 6 C -0.102 4.102 7 N -0.089 5.089 8 N -0.332 5.332 9 C 0.309 3.691 10 O -0.337 6.337 11 C -0.045 4.045 12 O -0.161 6.161 13 C 0.151 3.849 14 C -0.228 4.228 15 C -0.051 4.051 16 C -0.159 4.159 17 C -0.188 4.188 18 O -0.339 6.339 19 Si 0.770 3.230 20 H -0.171 1.171 21 H -0.169 1.169 22 H -0.173 1.173 23 C -0.006 4.006 24 C -0.159 4.159 25 N 0.548 4.452 26 O -0.385 6.385 27 O -0.341 6.341 28 C -0.432 4.432 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.216 0.784 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.173 0.827 45 H 0.160 0.840 46 H 0.143 0.857 47 H 0.226 0.774 48 H 0.184 0.816 49 H 0.073 0.927 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.404 -8.681 2.613 11.100 hybrid contribution -1.140 -0.840 0.091 1.419 sum -7.544 -9.521 2.704 12.445 Atomic orbital electron populations 1.26123 1.20309 1.04550 1.04880 0.79182 0.65785 0.67692 0.64659 1.26044 1.07426 1.17660 1.04199 1.26390 1.00733 1.08072 1.14493 1.21191 0.96573 1.01288 0.94944 1.22601 1.02136 0.95181 0.90268 1.62982 1.13960 1.38180 0.93773 1.45325 1.29022 1.29524 1.29312 1.19595 0.80213 0.84468 0.84778 1.90849 1.57161 1.25222 1.60486 1.22649 0.87827 0.96723 0.97304 1.86496 1.38977 1.53618 1.37008 1.18678 0.89113 0.91168 0.85940 1.21243 1.04309 0.99048 0.98228 1.21303 0.92450 0.97126 0.94259 1.20282 0.97868 0.97897 0.99902 1.25017 1.06365 1.00753 0.86712 1.86580 1.32884 1.56612 1.57789 0.85708 0.79804 0.75920 0.81613 1.17053 1.16883 1.17268 1.20850 0.98053 0.93302 0.88425 1.20600 0.99740 0.96080 0.99512 1.43337 1.00171 1.00891 1.00781 1.94557 1.14820 1.55286 1.73813 1.94708 1.58375 1.68452 1.12519 1.28085 0.90366 1.07082 1.17696 0.91057 0.90631 0.91237 0.90239 0.91280 0.91350 0.90738 0.90005 0.90803 0.90055 0.90190 0.93741 0.78377 0.88152 0.88018 0.82707 0.83992 0.85685 0.77449 0.81614 0.92661 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.14 8.65 101.05 0.87 2.01 16 2 Si 1.03 -2.86 11.99 -169.99 -2.04 -4.90 16 3 C -0.44 0.16 8.65 101.05 0.87 1.04 16 4 C -0.41 0.86 5.04 37.64 0.19 1.05 16 5 C -0.10 0.08 5.74 -26.44 -0.15 -0.07 16 6 C 0.03 -0.02 5.38 -4.31 -0.02 -0.05 16 7 N -0.27 -0.02 4.15 -56.97 -0.24 -0.26 16 8 N -0.58 0.65 4.71 31.22 0.15 0.80 16 9 C 0.53 0.76 8.01 -10.98 -0.09 0.67 16 10 O -0.47 -3.36 16.83 -14.35 -0.24 -3.61 16 11 C 0.03 -0.07 5.22 36.01 0.19 0.11 16 12 O -0.25 -0.60 7.68 -49.76 -0.38 -0.98 16 13 C 0.20 0.17 6.67 -39.22 -0.26 -0.09 16 14 C -0.21 0.61 9.04 -39.44 -0.36 0.26 16 15 C -0.03 0.11 8.66 -39.61 -0.34 -0.23 16 16 C -0.16 0.32 5.35 -104.60 -0.56 -0.24 16 17 C -0.08 0.23 2.80 36.01 0.10 0.33 16 18 O -0.53 0.92 12.83 -35.23 -0.45 0.46 16 19 Si 0.95 -3.29 25.13 -169.99 -4.27 -7.56 16 20 H -0.25 0.78 7.11 56.52 0.40 1.18 16 21 H -0.25 0.36 7.11 56.52 0.40 0.76 16 22 H -0.25 0.95 7.04 56.52 0.40 1.35 16 23 C 0.01 0.00 9.19 -39.60 -0.36 -0.36 16 24 C -0.07 -0.21 6.87 -79.81 -0.55 -0.76 16 25 N 0.03 0.18 4.45 34.03 0.15 0.33 16 26 O -0.18 -1.26 18.45 -29.46 -0.54 -1.81 16 27 O -0.12 -1.02 17.24 -36.49 -0.63 -1.64 16 28 C -0.26 0.49 4.85 60.52 0.29 0.78 16 29 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 30 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.07 -0.19 7.96 -51.93 -0.41 -0.61 16 32 H 0.08 0.11 7.96 -51.93 -0.41 -0.31 16 33 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 34 H 0.07 -0.01 7.96 -51.93 -0.41 -0.43 16 35 H 0.07 -0.19 7.99 -51.93 -0.42 -0.61 16 36 H 0.08 -0.17 7.99 -51.93 -0.42 -0.59 16 37 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 38 H 0.08 0.04 7.96 -51.93 -0.41 -0.37 16 39 H 0.08 -0.03 8.03 -51.93 -0.42 -0.44 16 40 H 0.04 -0.10 7.78 -51.93 -0.40 -0.51 16 41 H 0.38 -1.76 8.83 -185.16 -1.63 -3.39 16 42 H 0.10 -0.56 7.66 -51.93 -0.40 -0.96 16 43 H 0.10 -0.55 7.66 -51.93 -0.40 -0.95 16 44 H 0.16 -1.00 6.30 -52.49 -0.33 -1.33 16 45 H 0.14 -0.78 4.86 -52.49 -0.25 -1.03 16 46 H 0.13 -0.45 7.96 -51.93 -0.41 -0.87 16 47 H 0.38 -1.91 8.70 45.56 0.40 -1.51 16 48 H 0.17 0.02 7.61 -52.49 -0.40 -0.38 16 49 H 0.05 -0.18 7.92 -51.93 -0.41 -0.59 16 50 H 0.09 -0.14 7.99 -51.93 -0.41 -0.55 16 LS Contribution 416.01 15.07 6.27 6.27 Total: 0.00 -12.30 416.01 -10.43 -22.73 By element: Atomic # 1 Polarization: -6.26 SS G_CDS: -8.03 Total: -14.29 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -0.17 Total: 4.45 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: 0.06 Total: 0.87 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -2.25 Total: -7.58 kcal Atomic # 14 Polarization: -6.15 SS G_CDS: -6.31 Total: -12.46 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -12.30 -10.43 -22.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_4549638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.194 kcal (2) G-P(sol) polarization free energy of solvation -12.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds