Wall clock time and date at job start Sun Mar 7 2021 09:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86303 * 110.05928 * 2 1 4 4 C 1.87523 * 110.00192 * 238.63917 * 2 1 3 5 5 C 1.53929 * 106.84925 * 196.89969 * 4 2 1 6 6 C 1.52624 * 109.31166 * 57.20448 * 5 4 2 7 7 N 1.46354 * 111.89190 * 283.47796 * 6 5 4 8 8 N 1.36594 * 111.00232 * 203.19765 * 7 6 5 9 9 C 1.34776 * 120.00104 * 111.10152 * 8 7 6 10 10 O 1.21282 * 120.00177 * 354.99397 * 9 8 7 11 11 C 1.50703 * 119.99947 * 174.99238 * 9 8 7 12 12 O 1.42902 * 109.47353 * 179.97438 * 11 9 8 13 13 C 1.35894 * 117.00252 * 180.02562 * 12 11 9 14 14 C 1.38708 * 120.05557 * 0.02562 * 13 12 11 15 15 C 1.38162 * 119.94590 * 179.72584 * 14 13 12 16 16 C 1.38248 * 120.05479 * 359.97369 * 15 14 13 17 17 C 1.50705 * 119.94457 * 180.02562 * 16 15 14 18 18 O 1.42903 * 109.46702 * 245.00255 * 17 16 15 19 19 Si 1.86296 * 109.47113 * 5.00151 * 17 16 15 20 20 H 1.48497 * 109.47279 * 59.99758 * 19 17 16 21 21 H 1.48503 * 109.47407 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47125 * 300.00086 * 19 17 16 23 23 C 1.38286 * 120.11293 * 0.02562 * 16 15 14 24 24 C 1.38128 * 120.05114 * 0.04605 * 23 16 15 25 25 N 1.48003 * 120.02451 * 180.02562 * 24 23 16 26 26 O 1.21809 * 120.00090 * 359.92592 * 25 24 23 27 27 O 1.21802 * 119.99862 * 179.97438 * 25 24 23 28 28 C 1.47724 * 111.30724 * 79.01806 * 7 6 5 29 29 H 1.09002 * 109.47075 * 298.63193 * 1 2 3 30 30 H 1.09001 * 109.47233 * 58.63826 * 1 2 3 31 31 H 1.09000 * 109.46711 * 178.63450 * 1 2 3 32 32 H 1.09003 * 109.46782 * 181.36375 * 3 2 1 33 33 H 1.09000 * 109.47223 * 301.36285 * 3 2 1 34 34 H 1.08998 * 109.47010 * 61.36554 * 3 2 1 35 35 H 1.08998 * 109.97700 * 316.23220 * 4 2 1 36 36 H 1.09003 * 109.97870 * 77.47753 * 4 2 1 37 37 H 1.09002 * 109.50120 * 177.15358 * 5 4 2 38 38 H 1.08998 * 109.49877 * 297.22106 * 5 4 2 39 39 H 1.08999 * 108.99570 * 162.85737 * 6 5 4 40 40 H 1.09004 * 108.99828 * 44.09564 * 6 5 4 41 41 H 0.97000 * 119.99751 * 291.09875 * 8 7 6 42 42 H 1.09002 * 109.46922 * 60.00104 * 11 9 8 43 43 H 1.09003 * 109.47457 * 299.99939 * 11 9 8 44 44 H 1.08002 * 120.03153 * 359.74524 * 14 13 12 45 45 H 1.08002 * 119.97531 * 180.02562 * 15 14 13 46 46 H 1.08991 * 109.47088 * 125.00399 * 17 16 15 47 47 H 0.96696 * 114.00062 * 60.00663 * 18 17 16 48 48 H 1.07997 * 119.97071 * 180.02562 * 23 16 15 49 49 H 1.08997 * 109.94727 * 59.06321 * 28 7 6 50 50 H 1.09003 * 109.95194 * 180.32167 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7500 0.0000 4 6 2.5044 -0.9171 -1.5047 5 6 3.9816 -1.2500 -1.2281 6 6 4.0832 -2.0636 0.0592 7 7 3.9263 -1.2251 1.2485 8 7 4.5044 -1.8095 2.3393 9 6 5.6123 -1.2700 2.8851 10 8 6.1483 -0.3197 2.3553 11 6 6.1852 -1.8475 4.1537 12 8 7.3498 -1.1095 4.5296 13 6 7.9923 -1.5045 5.6601 14 6 7.5121 -2.5803 6.3923 15 6 8.1702 -2.9834 7.5382 16 6 9.3069 -2.3158 7.9550 17 6 10.0232 -2.7580 9.2050 18 8 9.9448 -1.7252 10.1895 19 14 9.2236 -4.3062 9.8642 20 1 9.3050 -5.3795 8.8411 21 1 9.9290 -4.7417 11.0963 22 1 7.7991 -4.0313 10.1810 23 6 9.7877 -1.2430 7.2269 24 6 9.1324 -0.8352 6.0813 25 7 9.6478 0.3127 5.3022 26 8 10.6494 0.8991 5.6717 27 8 9.0698 0.6716 4.2919 28 6 2.5044 -0.9169 1.5042 29 1 -0.3633 0.4924 0.9020 30 1 -0.3634 0.5348 -0.8775 31 1 -0.3633 -1.0274 -0.0245 32 1 3.5917 1.7389 -0.0245 33 1 2.1242 2.2748 -0.8775 34 1 2.1640 2.2602 0.9020 35 1 1.9367 -1.8359 -1.6508 36 1 2.4231 -0.2848 -2.3889 37 1 4.3854 -1.8302 -2.0579 38 1 4.5490 -0.3256 -1.1205 39 1 5.0574 -2.5512 0.0949 40 1 3.3055 -2.8274 0.0586 41 1 4.1175 -2.6129 2.7212 42 1 6.4542 -2.8908 3.9889 43 1 5.4426 -1.7849 4.9492 44 1 6.6246 -3.1026 6.0667 45 1 7.7970 -3.8212 8.1084 46 1 11.0687 -2.9598 8.9725 47 1 9.0415 -1.4933 10.4452 48 1 10.6760 -0.7235 7.5543 49 1 1.9430 -1.8407 1.6439 50 1 2.4135 -0.2879 2.3898 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_4549638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:24:21 Heat of formation + Delta-G solvation = -69.925445 kcal Electronic energy + Delta-G solvation = -33392.252491 eV Core-core repulsion = 28741.696605 eV Total energy + Delta-G solvation = -4650.555886 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 383.156 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.28926 -41.79784 -40.92544 -39.63999 -38.38552 -37.58121 -37.33487 -34.97776 -33.51191 -32.38304 -31.99628 -29.50261 -29.26768 -28.34870 -27.82420 -27.51567 -26.57502 -24.89717 -23.90280 -22.82599 -21.92154 -21.74642 -20.53216 -19.77843 -19.28560 -18.82534 -18.63207 -18.24299 -17.97503 -17.61690 -17.14652 -16.57956 -16.33153 -16.14355 -15.78509 -15.54420 -15.34053 -15.17241 -14.93093 -14.74974 -14.38362 -14.05777 -13.96128 -13.93802 -13.80441 -13.78007 -13.49722 -13.23807 -13.19015 -13.11507 -12.96030 -12.69528 -12.39332 -12.30663 -12.26087 -12.19577 -12.08528 -12.02756 -11.97110 -11.72705 -11.33510 -10.85139 -10.81241 -10.75104 -10.51849 -10.41576 -10.21911 -9.81524 -9.62884 -1.32145 -0.25616 0.14548 0.34707 0.99632 1.15232 1.47744 1.50235 1.55030 1.71125 1.88814 1.95673 1.98603 2.02090 2.27347 2.62625 3.10143 3.15754 3.34754 3.41758 3.54891 3.64647 3.68749 3.77754 3.88439 3.96830 4.02891 4.16843 4.28580 4.38457 4.44893 4.53967 4.56322 4.61712 4.68222 4.74191 4.79747 4.80443 4.81538 4.85150 4.87058 4.92884 5.06530 5.09485 5.19020 5.30675 5.47643 5.59541 5.66359 5.71778 5.81744 6.20273 6.39892 6.42837 6.68729 7.49591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.095 2.905 3 C -0.471 4.471 4 C -0.416 4.416 5 C -0.106 4.106 6 C 0.028 3.972 7 N -0.305 5.305 8 N -0.569 5.569 9 C 0.520 3.480 10 O -0.544 6.544 11 C 0.031 3.969 12 O -0.290 6.290 13 C 0.194 3.806 14 C -0.190 4.190 15 C -0.018 4.018 16 C -0.150 4.150 17 C -0.087 4.087 18 O -0.554 6.554 19 Si 0.986 3.014 20 H -0.242 1.242 21 H -0.280 1.280 22 H -0.231 1.231 23 C 0.002 3.998 24 C -0.103 4.103 25 N 0.034 4.966 26 O -0.195 6.195 27 O -0.178 6.178 28 C -0.265 4.265 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.401 0.599 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.203 0.797 45 H 0.177 0.823 46 H 0.126 0.874 47 H 0.392 0.608 48 H 0.157 0.843 49 H 0.079 0.921 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.159 -12.671 4.136 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.284 2.716 3 C -0.576 4.576 4 C -0.502 4.502 5 C -0.145 4.145 6 C -0.099 4.099 7 N -0.122 5.122 8 N -0.317 5.317 9 C 0.306 3.694 10 O -0.418 6.418 11 C -0.047 4.047 12 O -0.200 6.200 13 C 0.144 3.856 14 C -0.208 4.208 15 C -0.035 4.035 16 C -0.151 4.151 17 C -0.195 4.195 18 O -0.362 6.362 19 Si 0.807 3.193 20 H -0.165 1.165 21 H -0.205 1.205 22 H -0.153 1.153 23 C -0.017 4.017 24 C -0.188 4.188 25 N 0.544 4.456 26 O -0.405 6.405 27 O -0.390 6.390 28 C -0.437 4.437 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.243 0.757 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.220 0.780 45 H 0.194 0.806 46 H 0.143 0.857 47 H 0.241 0.759 48 H 0.175 0.825 49 H 0.097 0.903 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.421 -12.671 4.197 16.338 hybrid contribution -0.196 0.344 -0.304 0.499 sum -9.617 -12.327 3.893 16.112 Atomic orbital electron populations 1.26131 1.19768 1.05268 1.04940 0.78243 0.65218 0.64413 0.63738 1.26427 1.05887 1.21284 1.03977 1.26476 0.99793 1.08938 1.14949 1.21208 0.97401 1.00363 0.95507 1.22557 1.02344 0.95309 0.89698 1.62904 1.15252 1.39568 0.94514 1.45161 1.28128 1.29751 1.28615 1.20421 0.80013 0.83486 0.85477 1.90828 1.59472 1.28654 1.62829 1.23011 0.87542 0.97774 0.96382 1.86466 1.40547 1.55264 1.37754 1.18936 0.88552 0.91995 0.86149 1.21749 1.05016 0.97022 0.97048 1.21729 0.91016 0.96962 0.93821 1.20469 0.98257 0.96785 0.99605 1.25287 1.06910 1.01210 0.86120 1.86553 1.34417 1.57170 1.58042 0.85196 0.79880 0.74418 0.79785 1.16491 1.20543 1.15341 1.20895 0.98105 0.94445 0.88229 1.20889 1.01816 0.95627 1.00482 1.43894 0.99538 1.01575 1.00567 1.94499 1.15634 1.56561 1.73781 1.94696 1.59231 1.70475 1.14614 1.28173 0.89486 1.08258 1.17796 0.90962 0.90697 0.90131 0.92803 0.91193 0.91881 0.89208 0.90138 0.90578 0.92454 0.91254 0.91452 0.75747 0.83834 0.83856 0.78020 0.80606 0.85658 0.75887 0.82537 0.90265 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.91 8.65 113.37 0.98 3.89 16 2 Si 1.10 -6.06 11.99 68.60 0.82 -5.24 16 3 C -0.47 -0.82 8.65 113.37 0.98 0.16 16 4 C -0.42 1.81 5.04 72.30 0.36 2.18 16 5 C -0.11 0.06 5.74 30.78 0.18 0.23 16 6 C 0.03 -0.05 5.38 86.28 0.46 0.41 16 7 N -0.31 -0.13 4.15 -334.15 -1.39 -1.51 16 8 N -0.57 1.68 4.71 -173.53 -0.82 0.86 16 9 C 0.52 1.80 8.01 87.66 0.70 2.50 16 10 O -0.54 -9.65 16.83 16.00 0.27 -9.38 16 11 C 0.03 -0.19 5.22 71.24 0.37 0.18 16 12 O -0.29 -1.57 7.68 -63.34 -0.49 -2.06 16 13 C 0.19 0.25 6.67 22.50 0.15 0.40 16 14 C -0.19 1.83 9.04 22.36 0.20 2.03 16 15 C -0.02 0.18 8.66 22.25 0.19 0.38 16 16 C -0.15 0.82 5.35 -19.85 -0.11 0.71 16 17 C -0.09 0.61 2.80 71.24 0.20 0.80 16 18 O -0.55 2.16 12.83 -148.98 -1.91 0.25 16 19 Si 0.99 -9.47 25.13 68.60 1.72 -7.75 16 20 H -0.24 2.46 7.11 99.48 0.71 3.17 16 21 H -0.28 1.01 7.11 99.48 0.71 1.72 16 22 H -0.23 2.83 7.04 99.48 0.70 3.53 16 23 C 0.00 0.00 9.19 22.25 0.20 0.21 16 24 C -0.10 -0.74 6.87 36.47 0.25 -0.49 16 25 N 0.03 0.58 4.45 -46.24 -0.21 0.37 16 26 O -0.20 -3.62 18.45 18.87 0.35 -3.27 16 27 O -0.18 -3.99 17.24 25.60 0.44 -3.55 16 28 C -0.27 1.22 4.85 127.53 0.62 1.84 16 29 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 30 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 31 H 0.08 -0.65 7.96 -2.39 -0.02 -0.67 16 32 H 0.05 0.36 7.96 -2.39 -0.02 0.35 16 33 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 34 H 0.06 0.13 7.96 -2.39 -0.02 0.11 16 35 H 0.09 -0.63 7.99 -2.39 -0.02 -0.65 16 36 H 0.08 -0.32 7.99 -2.39 -0.02 -0.34 16 37 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.06 0.23 7.96 -2.39 -0.02 0.22 16 39 H 0.07 0.00 8.03 -2.39 -0.02 -0.02 16 40 H 0.07 -0.45 7.78 -2.39 -0.02 -0.47 16 41 H 0.40 -4.76 8.83 -215.50 -1.90 -6.66 16 42 H 0.14 -2.17 7.66 -2.39 -0.02 -2.19 16 43 H 0.14 -2.12 7.66 -2.39 -0.02 -2.14 16 44 H 0.20 -3.93 6.30 -2.91 -0.02 -3.94 16 45 H 0.18 -2.94 4.86 -2.91 -0.01 -2.96 16 46 H 0.13 -0.94 7.96 -2.39 -0.02 -0.96 16 47 H 0.39 -4.35 8.70 -74.06 -0.64 -5.00 16 48 H 0.16 0.41 7.61 -2.91 -0.02 0.39 16 49 H 0.08 -0.75 7.92 -2.39 -0.02 -0.76 16 50 H 0.09 -0.29 7.99 -2.39 -0.02 -0.31 16 Total: 0.00 -38.20 416.01 3.74 -34.45 By element: Atomic # 1 Polarization: -17.78 SS G_CDS: -0.81 Total: -18.59 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 5.75 Total: 15.43 kcal Atomic # 7 Polarization: 2.12 SS G_CDS: -2.41 Total: -0.28 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -1.34 Total: -18.02 kcal Atomic # 14 Polarization: -15.53 SS G_CDS: 2.55 Total: -12.99 kcal Total: -38.20 3.74 -34.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_4549638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.472 kcal (2) G-P(sol) polarization free energy of solvation -38.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds