Wall clock time and date at job start Sun Mar 7 2021 09:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86306 * 110.06453 * 2 1 4 4 C 1.87524 * 110.00505 * 238.63544 * 2 1 3 5 5 C 1.53924 * 106.85106 * 196.90161 * 4 2 1 6 6 C 1.52630 * 109.31026 * 57.20474 * 5 4 2 7 7 N 1.46361 * 111.89029 * 283.47589 * 6 5 4 8 8 N 1.36600 * 111.00163 * 203.19831 * 7 6 5 9 9 C 1.34777 * 119.99774 * 55.64742 * 8 7 6 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99675 * 179.72718 * 9 8 7 12 12 F 1.39903 * 109.47174 * 300.27796 * 11 9 8 13 13 F 1.39898 * 109.47270 * 60.27681 * 11 9 8 14 14 O 1.42899 * 109.47143 * 180.27800 * 11 9 8 15 15 C 1.35901 * 116.99988 * 179.97438 * 14 11 9 16 16 C 1.38728 * 120.05738 * 359.72926 * 15 14 11 17 17 C 1.38142 * 119.94278 * 179.73861 * 16 15 14 18 18 C 1.38266 * 120.05765 * 0.51226 * 17 16 15 19 19 C 1.50703 * 119.94581 * 179.74174 * 18 17 16 20 20 O 1.42890 * 109.47199 * 245.01957 * 19 18 17 21 21 Si 1.86305 * 109.47143 * 5.02313 * 19 18 17 22 22 H 1.48496 * 109.47022 * 59.99449 * 21 19 18 23 23 H 1.48494 * 109.47203 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46902 * 299.99958 * 21 19 18 25 25 C 1.38264 * 120.11077 * 359.76374 * 18 17 16 26 26 C 1.38139 * 120.05601 * 359.97438 * 25 18 17 27 27 C 1.47719 * 111.30353 * 79.02160 * 7 6 5 28 28 H 1.08999 * 109.47267 * 298.63624 * 1 2 3 29 29 H 1.08999 * 109.47085 * 58.63482 * 1 2 3 30 30 H 1.08996 * 109.47033 * 178.64079 * 1 2 3 31 31 H 1.08993 * 109.47345 * 181.36489 * 3 2 1 32 32 H 1.08998 * 109.46684 * 301.36518 * 3 2 1 33 33 H 1.09008 * 109.46747 * 61.36059 * 3 2 1 34 34 H 1.09006 * 109.97260 * 316.23589 * 4 2 1 35 35 H 1.08999 * 109.97713 * 77.47078 * 4 2 1 36 36 H 1.08997 * 109.49779 * 177.15153 * 5 4 2 37 37 H 1.08999 * 109.49801 * 297.21979 * 5 4 2 38 38 H 1.09002 * 108.99626 * 162.86070 * 6 5 4 39 39 H 1.08999 * 108.99912 * 44.10038 * 6 5 4 40 40 H 1.07998 * 120.02513 * 359.97438 * 16 15 14 41 41 H 1.08009 * 119.97422 * 180.22805 * 17 16 15 42 42 H 1.09008 * 109.46941 * 125.01856 * 19 18 17 43 43 H 0.96702 * 114.00156 * 60.00621 * 20 19 18 44 44 H 1.07997 * 119.97376 * 179.97438 * 25 18 17 45 45 H 1.08003 * 120.03344 * 179.97438 * 26 25 18 46 46 H 1.08998 * 109.95198 * 59.06445 * 27 7 6 47 47 H 1.09008 * 109.94669 * 180.31883 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5022 1.7500 0.0000 4 6 2.5045 -0.9171 -1.5046 5 6 3.9816 -1.2501 -1.2280 6 6 4.0831 -2.0636 0.0595 7 7 3.9262 -1.2250 1.2487 8 7 4.5043 -1.8095 2.3396 9 6 5.8033 -2.1669 2.3035 10 8 6.4591 -1.9692 1.3026 11 6 6.4426 -2.8061 3.5092 12 9 6.3573 -1.9339 4.5998 13 9 5.7772 -3.9986 3.8128 14 8 7.8158 -3.0849 3.2287 15 6 8.5423 -3.6660 4.2193 16 6 7.9473 -3.9566 5.4384 17 6 8.6866 -4.5523 6.4419 18 6 10.0212 -4.8491 6.2358 19 6 10.8268 -5.4936 7.3343 20 8 11.8503 -4.5942 7.7648 21 14 9.7094 -5.8957 8.7698 22 1 8.6457 -6.8303 8.3224 23 1 10.5033 -6.5302 9.8525 24 1 9.0886 -4.6465 9.2789 25 6 10.6180 -4.5552 5.0237 26 6 9.8817 -3.9646 4.0152 27 6 2.5043 -0.9169 1.5043 28 1 -0.3634 0.4925 0.9019 29 1 -0.3633 0.5349 -0.8775 30 1 -0.3633 -1.0273 -0.0244 31 1 3.5918 1.7388 -0.0245 32 1 2.1244 2.2747 -0.8775 33 1 2.1641 2.2602 0.9020 34 1 1.9366 -1.8361 -1.6506 35 1 2.4231 -0.2850 -2.3888 36 1 4.3853 -1.8303 -2.0577 37 1 4.5490 -0.3256 -1.1204 38 1 5.0573 -2.5512 0.0952 39 1 3.3055 -2.8274 0.0588 40 1 6.9060 -3.7209 5.6013 41 1 8.2229 -4.7821 7.3899 42 1 11.2824 -6.4106 6.9606 43 1 11.5167 -3.7550 8.1105 44 1 11.6607 -4.7877 4.8653 45 1 10.3484 -3.7348 3.0687 46 1 1.9429 -1.8406 1.6441 47 1 2.4135 -0.2878 2.3899 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_4549640.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:24:35 Heat of formation + Delta-G solvation = -240.225496 kcal Electronic energy + Delta-G solvation = -32254.381376 eV Core-core repulsion = 27502.204949 eV Total energy + Delta-G solvation = -4752.176427 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 373.135 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.40408 -48.42845 -41.24294 -39.70481 -39.08429 -37.37571 -37.00345 -33.71725 -32.40298 -31.94709 -30.42557 -29.22514 -28.26548 -28.14835 -27.05892 -26.10284 -24.60074 -23.67269 -22.56063 -21.87365 -20.74379 -20.05953 -19.24708 -18.67880 -17.83179 -17.27602 -17.07624 -16.60411 -16.22233 -16.10123 -15.84708 -15.71233 -15.38843 -15.28868 -15.16067 -15.05633 -14.79105 -14.71801 -14.59355 -14.38485 -14.14206 -14.04912 -14.00580 -13.86460 -13.74084 -13.52010 -13.27143 -13.05692 -12.99658 -12.95449 -12.82023 -12.37080 -12.23100 -12.09025 -12.01090 -11.86715 -11.59818 -11.06719 -10.90713 -10.64052 -10.39786 -10.25976 -10.19485 -9.89288 -9.52914 -9.14202 -7.54430 0.06297 0.14042 1.19098 1.22691 1.47676 1.54711 1.81423 1.92132 2.05648 2.12544 2.19924 2.48655 2.49109 2.83316 2.97087 3.52503 3.54428 3.69107 3.77098 3.81260 3.95510 4.09440 4.18238 4.24854 4.35922 4.44555 4.65235 4.68780 4.71897 4.79312 4.83183 4.92062 4.94023 4.95427 4.97017 4.98375 5.04698 5.10306 5.14232 5.26390 5.30337 5.31959 5.51254 5.54195 5.65282 5.72931 5.91467 6.10595 6.71566 6.75240 7.33514 8.46557 Molecular weight = 373.14amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.001972 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.662084 B =14198.422784 C =14662.504044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.425 4.425 2 Si 1.063 2.937 3 C -0.439 4.439 4 C -0.403 4.403 5 C -0.091 4.091 6 C 0.015 3.985 7 N -0.340 5.340 8 N -0.588 5.588 9 C 0.370 3.630 10 O -0.665 6.665 11 C 0.461 3.539 12 F -0.193 7.193 13 F -0.196 7.196 14 O -0.315 6.315 15 C 0.077 3.923 16 C -0.208 4.208 17 C -0.086 4.086 18 C -0.145 4.145 19 C -0.067 4.067 20 O -0.547 6.547 21 Si 0.977 3.023 22 H -0.265 1.265 23 H -0.255 1.255 24 H -0.260 1.260 25 C -0.043 4.043 26 C -0.143 4.143 27 C -0.239 4.239 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.008 0.992 40 H 0.116 0.884 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.389 0.611 44 H 0.170 0.830 45 H 0.142 0.858 46 H 0.011 0.989 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.577 -2.636 5.347 6.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.536 4.536 2 Si 1.253 2.747 3 C -0.547 4.547 4 C -0.488 4.488 5 C -0.129 4.129 6 C -0.113 4.113 7 N -0.156 5.156 8 N -0.460 5.460 9 C 0.142 3.858 10 O -0.559 6.559 11 C 0.383 3.617 12 F -0.175 7.175 13 F -0.178 7.178 14 O -0.232 6.232 15 C 0.034 3.966 16 C -0.226 4.226 17 C -0.104 4.104 18 C -0.146 4.146 19 C -0.177 4.177 20 O -0.354 6.354 21 Si 0.801 3.199 22 H -0.189 1.189 23 H -0.180 1.180 24 H -0.184 1.184 25 C -0.061 4.061 26 C -0.162 4.162 27 C -0.408 4.408 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.026 0.974 40 H 0.134 0.866 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.238 0.762 44 H 0.187 0.813 45 H 0.160 0.840 46 H 0.030 0.970 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.582 -2.837 5.715 6.573 hybrid contribution 0.015 -0.584 0.021 0.584 sum 1.597 -3.421 5.735 6.867 Atomic orbital electron populations 1.25798 1.17056 1.05029 1.05719 0.78916 0.67145 0.66104 0.62551 1.25985 1.05443 1.18419 1.04889 1.26378 0.98544 1.08460 1.15430 1.21088 0.98094 0.99407 0.94346 1.22401 0.99484 0.95836 0.93570 1.62279 1.12871 1.40916 0.99551 1.75772 1.09222 1.39537 1.21470 1.20966 0.89412 0.89316 0.86148 1.90368 1.66935 1.65028 1.33581 1.22222 0.78921 0.75705 0.84837 1.92988 1.95841 1.70328 1.58294 1.92984 1.81421 1.49288 1.94089 1.86744 1.21029 1.75524 1.39892 1.19737 0.93302 0.95724 0.87844 1.21558 1.01304 1.05695 0.94082 1.21014 0.94255 0.96884 0.98222 1.20559 0.93695 1.02662 0.97671 1.24952 0.96326 0.96045 1.00400 1.86453 1.33358 1.31599 1.83989 0.85312 0.77194 0.80463 0.76926 1.18943 1.17953 1.18389 1.21128 1.00636 0.94043 0.90284 1.20799 0.89752 1.03185 1.02423 1.28320 0.90215 1.04853 1.17376 0.90457 0.88710 0.91053 0.93282 0.89163 0.91140 0.90576 0.88300 0.92240 0.92611 0.93739 0.97409 0.86572 0.84020 0.84514 0.76220 0.81269 0.83994 0.97018 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.43 -8.34 8.65 113.37 0.98 -7.36 16 2 Si 1.06 29.22 11.99 68.60 0.82 30.04 16 3 C -0.44 -11.82 8.65 113.37 0.98 -10.83 16 4 C -0.40 -11.63 5.04 72.29 0.36 -11.26 16 5 C -0.09 -3.60 5.74 30.78 0.18 -3.43 16 6 C 0.02 0.79 4.92 86.28 0.42 1.21 16 7 N -0.34 -18.49 4.64 -334.13 -1.55 -20.04 16 8 N -0.59 -36.41 10.67 -173.53 -1.85 -38.26 16 9 C 0.37 23.52 6.88 87.66 0.60 24.13 16 10 O -0.66 -45.40 14.40 16.00 0.23 -45.16 16 11 C 0.46 25.70 2.13 71.24 0.15 25.85 16 12 F -0.19 -10.26 15.27 44.97 0.69 -9.58 16 13 F -0.20 -10.44 15.31 44.97 0.69 -9.75 16 14 O -0.31 -16.58 9.60 -73.40 -0.70 -17.29 16 15 C 0.08 3.25 6.48 22.51 0.15 3.40 16 16 C -0.21 -7.94 8.26 22.36 0.18 -7.75 16 17 C -0.09 -2.46 8.66 22.25 0.19 -2.27 16 18 C -0.15 -3.42 5.35 -19.85 -0.11 -3.53 16 19 C -0.07 -1.10 2.80 71.24 0.20 -0.90 16 20 O -0.55 -8.90 12.83 -148.98 -1.91 -10.82 16 21 Si 0.98 15.69 25.14 68.60 1.72 17.41 16 22 H -0.26 -4.97 7.11 99.48 0.71 -4.26 16 23 H -0.26 -4.08 7.11 99.48 0.71 -3.37 16 24 H -0.26 -4.55 7.04 99.48 0.70 -3.85 16 25 C -0.04 -1.07 9.68 22.25 0.22 -0.85 16 26 C -0.14 -4.73 9.99 22.37 0.22 -4.51 16 27 C -0.24 -10.37 4.86 127.53 0.62 -9.75 16 28 H 0.08 1.43 7.96 -2.39 -0.02 1.41 16 29 H 0.09 1.42 7.96 -2.39 -0.02 1.40 16 30 H 0.07 1.40 7.96 -2.39 -0.02 1.38 16 31 H 0.05 1.60 7.96 -2.39 -0.02 1.58 16 32 H 0.09 1.86 7.96 -2.39 -0.02 1.84 16 33 H 0.07 1.80 7.96 -2.38 -0.02 1.78 16 34 H 0.08 2.06 7.99 -2.38 -0.02 2.04 16 35 H 0.10 2.23 7.99 -2.39 -0.02 2.22 16 36 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.06 2.32 7.96 -2.39 -0.02 2.31 16 38 H 0.04 2.69 5.25 -2.39 -0.01 2.68 16 39 H 0.01 0.38 7.78 -2.39 -0.02 0.37 16 40 H 0.12 4.86 5.10 -2.91 -0.01 4.85 16 41 H 0.14 3.37 4.86 -2.91 -0.01 3.35 16 42 H 0.14 1.75 7.96 -2.38 -0.02 1.73 16 43 H 0.39 4.27 8.70 -74.06 -0.64 3.63 16 44 H 0.17 3.02 8.06 -2.91 -0.02 2.99 16 45 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 46 H 0.01 0.50 7.92 -2.39 -0.02 0.48 16 47 H 0.05 2.45 7.99 -2.38 -0.02 2.43 16 Total: -1.00 -82.36 390.74 4.61 -77.75 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 1.12 Total: 33.56 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 5.36 Total: -7.87 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -3.40 Total: -58.30 kcal Atomic # 8 Polarization: -70.88 SS G_CDS: -2.39 Total: -73.27 kcal Atomic # 9 Polarization: -20.70 SS G_CDS: 1.38 Total: -19.33 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.55 Total: 47.45 kcal Total: -82.36 4.61 -77.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_4549640.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.474 kcal (2) G-P(sol) polarization free energy of solvation -82.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds