Wall clock time and date at job start Sun Mar 7 2021 09:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86297 * 110.05860 * 2 1 4 4 C 1.87519 * 110.00380 * 121.36136 * 2 1 3 5 5 C 1.53936 * 106.84838 * 75.50702 * 4 2 1 6 6 C 1.52619 * 109.31318 * 57.20090 * 5 4 2 7 7 N 1.46360 * 111.89276 * 283.48077 * 6 5 4 8 8 N 1.36601 * 111.00124 * 203.19328 * 7 6 5 9 9 C 1.34778 * 119.99569 * 124.56477 * 8 7 6 10 10 O 1.21280 * 120.00271 * 5.00918 * 9 8 7 11 11 C 1.50704 * 119.99659 * 185.00577 * 9 8 7 12 12 O 1.42901 * 109.47026 * 180.02562 * 11 9 8 13 13 C 1.35901 * 116.99930 * 180.02562 * 12 11 9 14 14 C 1.38707 * 120.05515 * 359.72232 * 13 12 11 15 15 C 1.38165 * 119.94039 * 179.72657 * 14 13 12 16 16 C 1.38239 * 120.05887 * 0.57281 * 15 14 13 17 17 C 1.38287 * 120.11190 * 359.67995 * 16 15 14 18 18 C 1.50699 * 119.97649 * 180.02562 * 17 16 15 19 19 O 1.42897 * 109.47315 * 245.02244 * 18 17 16 20 20 Si 1.86298 * 109.46756 * 5.02388 * 18 17 16 21 21 H 1.48497 * 109.47206 * 60.00206 * 20 18 17 22 22 H 1.48498 * 109.46896 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47004 * 299.99627 * 20 18 17 24 24 C 1.38129 * 120.05263 * 0.04140 * 17 16 15 25 25 C 1.47721 * 111.30499 * 79.01856 * 7 6 5 26 26 H 1.08998 * 109.47241 * 298.62950 * 1 2 3 27 27 H 1.08994 * 109.47549 * 58.63733 * 1 2 3 28 28 H 1.09001 * 109.46977 * 178.64056 * 1 2 3 29 29 H 1.09003 * 109.47387 * 181.36200 * 3 2 1 30 30 H 1.09006 * 109.47586 * 301.36485 * 3 2 1 31 31 H 1.09003 * 109.47278 * 61.36169 * 3 2 1 32 32 H 1.08998 * 109.97543 * 194.83580 * 4 2 1 33 33 H 1.08996 * 109.98214 * 316.08342 * 4 2 1 34 34 H 1.08996 * 109.49941 * 177.15600 * 5 4 2 35 35 H 1.09006 * 109.49549 * 297.22076 * 5 4 2 36 36 H 1.09002 * 108.99798 * 44.09792 * 6 5 4 37 37 H 1.09000 * 109.00079 * 162.85847 * 6 5 4 38 38 H 0.96991 * 120.00168 * 304.56525 * 8 7 6 39 39 H 1.08995 * 109.47044 * 300.00075 * 11 9 8 40 40 H 1.08996 * 109.46718 * 60.00309 * 11 9 8 41 41 H 1.08001 * 120.02980 * 0.02562 * 14 13 12 42 42 H 1.08007 * 119.97128 * 180.27613 * 15 14 13 43 43 H 1.08000 * 119.94551 * 179.70248 * 16 15 14 44 44 H 1.08998 * 109.47051 * 125.01885 * 18 17 16 45 45 H 0.96702 * 113.99980 * 60.00275 * 19 18 17 46 46 H 1.08001 * 120.02903 * 179.97438 * 24 17 16 47 47 H 1.08998 * 109.95157 * 180.32059 * 25 7 6 48 48 H 1.08994 * 109.95212 * 59.06471 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5020 1.7500 0.0000 4 6 2.5045 -0.9170 1.5046 5 6 2.3107 -2.4189 1.2280 6 6 3.0399 -2.7932 -0.0594 7 7 2.3060 -2.3582 -1.2486 8 7 2.6568 -3.1017 -2.3396 9 6 1.7091 -3.7464 -3.0486 10 8 0.5376 -3.5941 -2.7741 11 6 2.1052 -4.6565 -4.1826 12 8 0.9320 -5.2181 -4.7746 13 6 1.1146 -6.0683 -5.8190 14 6 2.3959 -6.3516 -6.2684 15 6 2.5790 -7.2208 -7.3267 16 6 1.4860 -7.7987 -7.9452 17 6 0.2073 -7.5138 -7.5024 18 6 -0.9819 -8.1460 -8.1785 19 8 -1.7652 -7.1318 -8.8107 20 14 -0.3931 -9.3645 -9.4589 21 1 0.4209 -10.4184 -8.8018 22 1 -1.5649 -9.9879 -10.1247 23 1 0.4340 -8.6587 -10.4703 24 6 0.0192 -6.6501 -6.4411 25 6 2.5043 -0.9169 -1.5043 26 1 -0.3633 0.4924 0.9020 27 1 -0.3634 0.5348 -0.8774 28 1 -0.3633 -1.0274 -0.0244 29 1 3.5917 1.7389 -0.0244 30 1 2.1242 2.2748 -0.8775 31 1 2.1640 2.2602 0.9020 32 1 3.5624 -0.6989 1.6506 33 1 1.9385 -0.6239 2.3888 34 1 2.7171 -2.9971 2.0577 35 1 1.2476 -2.6347 1.1204 36 1 4.0241 -2.3247 -0.0588 37 1 3.1639 -3.8756 -0.0952 38 1 3.5878 -3.1656 -2.6039 39 1 2.6524 -4.0854 -4.9326 40 1 2.7391 -5.4570 -3.8015 41 1 3.2499 -5.8970 -5.7884 42 1 3.5767 -7.4452 -7.6742 43 1 1.6311 -8.4741 -8.7754 44 1 -1.5890 -8.6641 -7.4361 45 1 -1.2878 -6.6291 -9.4848 46 1 -0.9797 -6.4275 -6.0958 47 1 1.9446 -0.6158 -2.3898 48 1 3.5645 -0.7063 -1.6440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_4860298.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:25:09 Heat of formation + Delta-G solvation = -74.729513 kcal Electronic energy + Delta-G solvation = -26772.363264 eV Core-core repulsion = 22952.615493 eV Total energy + Delta-G solvation = -3819.747770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.59529 -40.81266 -39.25696 -38.32610 -37.21137 -34.96904 -32.52451 -32.31172 -31.33985 -29.35587 -28.97122 -28.36395 -27.53631 -26.79968 -24.75422 -23.71623 -22.60265 -21.89611 -21.54770 -19.34178 -18.87463 -18.28011 -17.56075 -17.50311 -17.24207 -16.90046 -16.56598 -16.14755 -15.73164 -15.28928 -15.25249 -14.96343 -14.84265 -14.71489 -14.44906 -14.37413 -14.04343 -13.96371 -13.81181 -13.50651 -13.47262 -13.20401 -13.12493 -13.00231 -12.98890 -12.60090 -12.19327 -12.07425 -12.02956 -11.98552 -11.94918 -11.55124 -11.34621 -10.82995 -10.80678 -10.46594 -10.33344 -10.21008 -9.94265 -9.70709 -9.30805 0.19083 0.36374 1.10334 1.20589 1.46864 1.47831 1.54651 1.76289 1.89457 1.92030 2.01965 2.46527 2.62075 2.65141 3.30023 3.53126 3.59289 3.68916 3.83381 3.96991 4.01457 4.05443 4.07577 4.16913 4.20779 4.36348 4.42404 4.54471 4.54821 4.66233 4.68496 4.73866 4.78691 4.80624 4.83737 4.84693 4.91877 4.97027 5.10164 5.22062 5.30805 5.33675 5.42099 5.47279 5.57549 5.64792 5.66276 5.81159 6.15487 6.22657 6.42869 6.68682 7.45659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.092 2.908 3 C -0.454 4.454 4 C -0.411 4.411 5 C -0.105 4.105 6 C 0.027 3.973 7 N -0.305 5.305 8 N -0.571 5.571 9 C 0.526 3.474 10 O -0.552 6.552 11 C 0.045 3.955 12 O -0.321 6.321 13 C 0.115 3.885 14 C -0.202 4.202 15 C -0.072 4.072 16 C -0.171 4.171 17 C -0.083 4.083 18 C -0.091 4.091 19 O -0.555 6.555 20 Si 0.997 3.003 21 H -0.253 1.253 22 H -0.278 1.278 23 H -0.245 1.245 24 C -0.145 4.145 25 C -0.270 4.270 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.399 0.601 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.137 0.863 44 H 0.118 0.882 45 H 0.389 0.611 46 H 0.118 0.882 47 H 0.074 0.926 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.336 0.806 -0.019 10.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.573 4.573 2 Si 1.281 2.719 3 C -0.562 4.562 4 C -0.498 4.498 5 C -0.144 4.144 6 C -0.101 4.101 7 N -0.121 5.121 8 N -0.317 5.317 9 C 0.312 3.688 10 O -0.427 6.427 11 C -0.034 4.034 12 O -0.234 6.234 13 C 0.070 3.930 14 C -0.221 4.221 15 C -0.089 4.089 16 C -0.188 4.188 17 C -0.084 4.084 18 C -0.200 4.200 19 O -0.362 6.362 20 Si 0.820 3.180 21 H -0.177 1.177 22 H -0.204 1.204 23 H -0.168 1.168 24 C -0.164 4.164 25 C -0.441 4.441 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.241 0.759 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.178 0.822 42 H 0.177 0.823 43 H 0.155 0.845 44 H 0.136 0.864 45 H 0.238 0.762 46 H 0.136 0.864 47 H 0.093 0.907 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.657 0.025 0.083 8.657 hybrid contribution 1.095 0.666 -0.205 1.298 sum 9.752 0.691 -0.123 9.777 Atomic orbital electron populations 1.26392 1.23499 1.03552 1.03895 0.78298 0.64664 0.65174 0.63791 1.26145 1.06946 1.18220 1.04898 1.26401 1.07145 1.01738 1.14489 1.21219 1.00880 0.96876 0.95382 1.22585 0.96589 1.01662 0.89226 1.62929 1.54217 1.00539 0.94456 1.45203 1.09592 1.49671 1.27281 1.20486 0.85491 0.80056 0.82779 1.90742 1.20103 1.63314 1.68547 1.22623 0.87617 0.98176 0.95018 1.86123 1.33595 1.58541 1.45181 1.19205 0.94845 0.91036 0.87892 1.21610 0.95534 1.03666 1.01277 1.21284 1.00058 0.93872 0.93711 1.21239 0.92159 1.03098 1.02337 1.20211 0.95664 0.96971 0.95538 1.25257 0.94003 0.97207 1.03570 1.86502 1.40836 1.51377 1.57469 0.85016 0.78576 0.77204 0.77197 1.17714 1.20373 1.16796 1.20328 0.97869 1.00264 0.97907 1.28240 1.05624 0.92619 1.17660 0.90961 0.92233 0.92659 0.90218 0.91301 0.90445 0.89143 0.89797 0.89936 0.92180 0.91458 0.90195 0.75949 0.85693 0.85536 0.82176 0.82295 0.84531 0.86422 0.76171 0.86420 0.90674 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -1.19 8.65 113.37 0.98 -0.21 16 2 Si 1.09 -4.77 11.99 68.60 0.82 -3.95 16 3 C -0.45 2.26 8.65 113.37 0.98 3.24 16 4 C -0.41 1.98 5.04 72.30 0.36 2.35 16 5 C -0.10 0.21 5.74 30.78 0.18 0.39 16 6 C 0.03 -0.07 5.38 86.28 0.46 0.39 16 7 N -0.30 -0.50 4.15 -334.15 -1.39 -1.89 16 8 N -0.57 0.32 4.71 -173.53 -0.82 -0.50 16 9 C 0.53 3.04 8.01 87.66 0.70 3.74 16 10 O -0.55 -10.10 16.83 16.01 0.27 -9.83 16 11 C 0.04 -0.07 5.22 71.24 0.37 0.31 16 12 O -0.32 -2.58 9.67 -73.40 -0.71 -3.29 16 13 C 0.12 0.59 6.69 22.50 0.15 0.74 16 14 C -0.20 0.33 9.04 22.36 0.20 0.54 16 15 C -0.07 0.19 10.04 22.25 0.22 0.42 16 16 C -0.17 0.04 8.67 22.28 0.19 0.24 16 17 C -0.08 -0.25 5.35 -19.88 -0.11 -0.36 16 18 C -0.09 -0.13 2.80 71.24 0.20 0.07 16 19 O -0.55 -1.93 12.83 -148.98 -1.91 -3.84 16 20 Si 1.00 -1.07 25.14 68.60 1.72 0.65 16 21 H -0.25 0.16 7.11 99.48 0.71 0.87 16 22 H -0.28 -0.78 7.11 99.48 0.71 -0.07 16 23 H -0.24 0.58 7.04 99.48 0.70 1.28 16 24 C -0.14 -1.02 9.62 22.37 0.22 -0.80 16 25 C -0.27 0.44 4.86 127.53 0.62 1.06 16 26 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 27 H 0.06 0.22 7.96 -2.39 -0.02 0.20 16 28 H 0.05 0.39 7.96 -2.39 -0.02 0.38 16 29 H 0.08 -0.52 7.96 -2.39 -0.02 -0.54 16 30 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 31 H 0.08 -0.39 7.96 -2.39 -0.02 -0.40 16 32 H 0.09 -0.66 7.99 -2.39 -0.02 -0.68 16 33 H 0.08 -0.41 7.99 -2.39 -0.02 -0.43 16 34 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.06 0.12 7.96 -2.38 -0.02 0.10 16 36 H 0.07 -0.46 7.78 -2.39 -0.02 -0.48 16 37 H 0.08 -0.21 8.03 -2.39 -0.02 -0.23 16 38 H 0.40 -3.46 8.83 -215.51 -1.90 -5.36 16 39 H 0.13 -1.03 7.65 -2.39 -0.02 -1.05 16 40 H 0.13 -1.04 7.67 -2.39 -0.02 -1.06 16 41 H 0.16 -1.40 6.30 -2.91 -0.02 -1.42 16 42 H 0.16 -1.39 8.06 -2.91 -0.02 -1.41 16 43 H 0.14 -0.49 4.86 -2.91 -0.01 -0.51 16 44 H 0.12 0.11 7.96 -2.39 -0.02 0.09 16 45 H 0.39 -1.39 8.70 -74.06 -0.64 -2.03 16 46 H 0.12 1.15 8.06 -2.91 -0.02 1.13 16 47 H 0.07 0.13 7.99 -2.39 -0.02 0.11 16 48 H 0.07 -0.44 7.92 -2.39 -0.02 -0.46 16 Total: 0.00 -25.97 389.99 2.90 -23.08 By element: Atomic # 1 Polarization: -11.71 SS G_CDS: -0.83 Total: -12.54 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 5.74 Total: 12.11 kcal Atomic # 7 Polarization: -0.18 SS G_CDS: -2.20 Total: -2.38 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -2.35 Total: -16.97 kcal Atomic # 14 Polarization: -5.84 SS G_CDS: 2.55 Total: -3.29 kcal Total: -25.97 2.90 -23.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_4860298.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.652 kcal (2) G-P(sol) polarization free energy of solvation -25.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds