Wall clock time and date at job start Sun Mar 7 2021 09:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35978 * 117.00181 * 2 1 4 4 C 1.38682 * 119.99994 * 0.02562 * 3 2 1 5 5 C 1.38155 * 119.99791 * 179.75219 * 4 3 2 6 6 C 1.38672 * 119.99804 * 0.50233 * 5 4 3 7 7 O 1.35986 * 119.99521 * 179.74737 * 6 5 4 8 8 C 1.42901 * 117.00347 * 359.72630 * 7 6 5 9 9 C 1.50693 * 109.47147 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00234 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99760 * 180.02562 * 9 8 7 12 12 N 1.36601 * 119.99800 * 184.73330 * 11 9 8 13 13 C 1.46361 * 110.99934 * 111.06887 * 12 11 9 14 14 C 1.52625 * 111.88927 * 203.19515 * 13 12 11 15 15 C 1.53926 * 109.31315 * 283.47733 * 14 13 12 16 16 Si 1.87528 * 106.84964 * 57.20569 * 15 14 13 17 17 C 1.86305 * 110.00262 * 196.90363 * 16 15 14 18 18 C 1.86299 * 110.00030 * 75.50348 * 16 15 14 19 19 C 1.47731 * 111.00216 * 235.41915 * 12 11 9 20 20 C 1.38714 * 120.00563 * 359.48022 * 6 5 4 21 21 C 1.50702 * 120.00365 * 180.29828 * 20 6 5 22 22 O 1.42904 * 109.46514 * 284.99207 * 21 20 6 23 23 Si 1.86301 * 109.46961 * 164.99788 * 21 20 6 24 24 H 1.48499 * 109.47483 * 59.99770 * 23 21 20 25 25 H 1.48500 * 109.46715 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47174 * 299.99173 * 23 21 20 27 27 C 1.38118 * 119.99768 * 0.26453 * 20 6 5 28 28 H 1.09002 * 109.47005 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47008 * 300.00004 * 1 2 3 30 30 H 1.09000 * 109.47110 * 60.00711 * 1 2 3 31 31 H 1.07997 * 119.99670 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.99658 * 180.25516 * 5 4 3 33 33 H 1.09002 * 109.46784 * 60.00075 * 8 7 6 34 34 H 1.08997 * 109.47005 * 300.00676 * 8 7 6 35 35 H 0.97000 * 120.00294 * 5.01012 * 11 9 8 36 36 H 1.08994 * 108.99647 * 323.81752 * 13 12 11 37 37 H 1.09001 * 108.99634 * 82.57412 * 13 12 11 38 38 H 1.09002 * 109.49312 * 163.52884 * 14 13 12 39 39 H 1.08996 * 109.52398 * 43.44441 * 14 13 12 40 40 H 1.09001 * 109.97654 * 297.87248 * 15 14 13 41 41 H 1.08996 * 110.05486 * 176.58254 * 15 14 13 42 42 H 1.08997 * 109.46610 * 177.27529 * 17 16 15 43 43 H 1.09004 * 109.46830 * 297.27200 * 17 16 15 44 44 H 1.08998 * 109.47002 * 57.27167 * 17 16 15 45 45 H 1.08995 * 109.46985 * 302.72449 * 18 16 15 46 46 H 1.09000 * 109.47050 * 62.72805 * 18 16 15 47 47 H 1.09003 * 109.46966 * 182.72940 * 18 16 15 48 48 H 1.09006 * 109.94180 * 294.88792 * 19 12 11 49 49 H 1.08994 * 109.94603 * 56.14261 * 19 12 11 50 50 H 1.08996 * 109.47306 * 44.99357 * 21 20 6 51 51 H 0.96699 * 113.99561 * 59.99987 * 22 21 20 52 52 H 1.07996 * 120.00235 * 179.97438 * 27 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2911 2.3747 0.0005 5 6 1.9184 3.6056 0.0057 6 6 3.3032 3.6781 -0.0002 7 8 3.9206 4.8897 -0.0003 8 6 3.0807 6.0458 -0.0002 9 6 3.9349 7.2873 -0.0010 10 8 5.1439 7.1915 -0.0010 11 7 3.3553 8.5041 -0.0005 12 7 4.1259 9.6277 -0.0989 13 6 3.9218 10.2926 -1.3866 14 6 5.1116 11.1685 -1.7696 15 6 5.0703 12.4704 -0.9495 16 14 5.0716 11.9740 0.8589 17 6 4.5159 13.4059 1.9132 18 6 6.7787 11.4294 1.3689 19 6 3.8665 10.5478 1.0274 20 6 4.0587 2.5147 -0.0003 21 6 5.5637 2.5936 0.0001 22 8 6.0214 2.9669 -1.3012 23 14 6.2724 0.9316 0.4544 24 1 5.8301 -0.0827 -0.5359 25 1 7.7554 1.0092 0.4542 26 1 5.7968 0.5436 1.8066 27 6 3.4317 1.2841 -0.0002 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 0.2126 2.3181 0.0014 32 1 1.3302 4.5113 0.0103 33 1 2.4515 6.0378 0.8899 34 1 2.4513 6.0377 -0.8901 35 1 2.3913 8.5821 0.0736 36 1 3.7756 9.5359 -2.1574 37 1 3.0283 10.9140 -1.3274 38 1 5.0612 11.4061 -2.8322 39 1 6.0389 10.6355 -1.5595 40 1 4.1631 13.0282 -1.1818 41 1 5.9476 13.0786 -1.1693 42 1 4.4734 13.0937 2.9567 43 1 5.2221 14.2296 1.8088 44 1 3.5270 13.7320 1.5910 45 1 7.1038 10.6079 0.7306 46 1 7.4718 12.2645 1.2676 47 1 6.7591 11.0973 2.4069 48 1 2.8425 10.9182 0.9766 49 1 4.0301 10.0325 1.9738 50 1 5.8884 3.3380 0.7269 51 1 5.6907 3.8239 -1.6034 52 1 4.0198 0.3783 -0.0007 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_4974302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:25:22 Heat of formation + Delta-G solvation = -110.799473 kcal Electronic energy + Delta-G solvation = -31620.140500 eV Core-core repulsion = 27324.608807 eV Total energy + Delta-G solvation = -4295.531692 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.177 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.83258 -41.01387 -40.00017 -38.63773 -37.93732 -36.91918 -34.95104 -32.85483 -32.17932 -30.84996 -29.34667 -29.07237 -28.34654 -27.97373 -27.50701 -26.59100 -24.87505 -23.59066 -22.42175 -21.87505 -21.68099 -19.56140 -18.91256 -18.81392 -18.11736 -17.87540 -17.55539 -17.39778 -16.70520 -16.46658 -16.25831 -15.86554 -15.64253 -15.50309 -15.19590 -15.07746 -14.80591 -14.66640 -14.40840 -14.20693 -14.07907 -13.96107 -13.79770 -13.59684 -13.49309 -13.44517 -13.18883 -13.11028 -13.04861 -12.95876 -12.51460 -12.29218 -12.25957 -12.01971 -11.96197 -11.82672 -11.45561 -11.35022 -11.17623 -11.09801 -10.81227 -10.73990 -10.39461 -10.21480 -10.11448 -9.62756 -8.83674 0.04460 0.31851 1.14817 1.16832 1.45494 1.49472 1.52134 1.77873 1.90460 1.91260 2.02315 2.31779 2.47983 2.53617 2.63216 3.32337 3.52347 3.61170 3.72330 3.88307 3.95692 4.03210 4.07814 4.09704 4.13060 4.18760 4.21479 4.34302 4.40763 4.42514 4.43931 4.55030 4.67688 4.69401 4.75076 4.75408 4.80579 4.82210 4.85419 4.86314 4.93142 4.97672 5.10298 5.11020 5.18608 5.31425 5.39810 5.48306 5.59382 5.66678 5.81722 6.11415 6.21392 6.38085 6.45676 6.57610 7.49516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.089 3.911 4 C -0.160 4.160 5 C -0.157 4.157 6 C 0.097 3.903 7 O -0.311 6.311 8 C 0.043 3.957 9 C 0.526 3.474 10 O -0.547 6.547 11 N -0.572 5.572 12 N -0.302 5.302 13 C 0.027 3.973 14 C -0.105 4.105 15 C -0.415 4.415 16 Si 1.095 2.905 17 C -0.454 4.454 18 C -0.468 4.468 19 C -0.268 4.268 20 C -0.115 4.115 21 C -0.088 4.088 22 O -0.550 6.550 23 Si 1.035 2.965 24 H -0.261 1.261 25 H -0.271 1.271 26 H -0.239 1.239 27 C -0.137 4.137 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.399 0.601 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.079 0.921 51 H 0.375 0.625 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.474 5.500 1.020 11.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.044 3.956 4 C -0.179 4.179 5 C -0.175 4.175 6 C 0.052 3.948 7 O -0.224 6.224 8 C -0.036 4.036 9 C 0.312 3.688 10 O -0.421 6.421 11 N -0.319 5.319 12 N -0.119 5.119 13 C -0.101 4.101 14 C -0.143 4.143 15 C -0.501 4.501 16 Si 1.284 2.716 17 C -0.563 4.563 18 C -0.573 4.573 19 C -0.439 4.439 20 C -0.117 4.117 21 C -0.196 4.196 22 O -0.356 6.356 23 Si 0.856 3.144 24 H -0.185 1.185 25 H -0.196 1.196 26 H -0.162 1.162 27 C -0.155 4.155 28 H 0.131 0.869 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.180 0.820 32 H 0.188 0.812 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.240 0.760 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.097 0.903 51 H 0.224 0.776 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.234 3.697 1.294 9.118 hybrid contribution -1.852 1.306 -0.223 2.278 sum -10.086 5.003 1.071 11.310 Atomic orbital electron populations 1.23359 0.76253 1.05577 1.02489 1.86078 1.23571 1.26649 1.89028 1.18979 0.91856 0.85415 0.99380 1.21406 1.01558 0.90839 1.04086 1.21399 0.92140 0.99938 1.04070 1.18698 0.91565 0.84135 1.00384 1.86084 1.35305 1.11703 1.89346 1.22624 0.92383 0.81638 1.06924 1.20439 0.88500 0.83957 0.75877 1.90750 1.16537 1.86759 1.48097 1.45240 1.08522 1.02181 1.75959 1.62920 1.45646 1.00258 1.03103 1.22588 0.99343 0.97898 0.90230 1.21205 0.97606 0.94947 1.00589 1.26457 1.05533 0.99923 1.18187 0.78242 0.63861 0.63189 0.66324 1.26155 1.06558 1.13851 1.09721 1.26385 1.20349 1.05468 1.05130 1.28197 1.11602 1.08515 0.95624 1.19420 0.96414 0.90671 1.05151 1.25292 0.92238 1.13439 0.88629 1.86633 1.74194 1.42511 1.32281 0.84209 0.78219 0.72316 0.79695 1.18538 1.19617 1.16227 1.20284 0.92842 0.97277 1.05143 0.86871 0.91263 0.91401 0.82043 0.81235 0.85779 0.85609 0.76048 0.90904 0.91728 0.90417 0.92182 0.89339 0.89989 0.91080 0.90625 0.90276 0.92568 0.91111 0.91951 0.90638 0.89765 0.90326 0.77597 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.34 -1.50 10.50 -93.30 -0.98 -2.48 16 3 C 0.09 0.41 6.69 22.49 0.15 0.56 16 4 C -0.16 0.18 9.03 22.36 0.20 0.38 16 5 C -0.16 0.37 9.03 22.35 0.20 0.57 16 6 C 0.10 0.33 6.62 22.49 0.15 0.48 16 7 O -0.31 -1.25 8.56 -74.36 -0.64 -1.88 16 8 C 0.04 -0.19 5.22 71.23 0.37 0.19 16 9 C 0.53 1.59 8.01 87.65 0.70 2.30 16 10 O -0.55 -8.14 16.83 16.02 0.27 -7.87 16 11 N -0.57 1.36 4.71 -173.54 -0.82 0.55 16 12 N -0.30 -0.07 4.15 -334.13 -1.39 -1.45 16 13 C 0.03 -0.07 5.38 86.28 0.46 0.40 16 14 C -0.10 0.17 5.74 30.78 0.18 0.35 16 15 C -0.42 2.04 5.04 72.29 0.36 2.40 16 16 Si 1.10 -6.16 11.99 68.60 0.82 -5.34 16 17 C -0.45 2.77 8.65 113.37 0.98 3.75 16 18 C -0.47 -0.46 8.65 113.37 0.98 0.52 16 19 C -0.27 1.05 4.85 127.53 0.62 1.67 16 20 C -0.12 -0.80 5.28 -19.78 -0.10 -0.90 16 21 C -0.09 -0.71 2.33 71.24 0.17 -0.55 16 22 O -0.55 -5.72 12.65 -148.98 -1.89 -7.60 16 23 Si 1.04 6.92 25.74 68.60 1.77 8.68 16 24 H -0.26 -2.06 6.73 99.48 0.67 -1.39 16 25 H -0.27 -2.41 7.11 99.48 0.71 -1.70 16 26 H -0.24 -1.16 7.11 99.48 0.71 -0.45 16 27 C -0.14 -0.98 8.59 22.36 0.19 -0.78 16 28 H 0.11 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H 0.07 -0.50 7.66 -2.39 -0.02 -0.52 16 30 H 0.07 -0.47 7.66 -2.39 -0.02 -0.49 16 31 H 0.16 -1.15 6.29 -2.91 -0.02 -1.17 16 32 H 0.17 -1.77 6.29 -2.91 -0.02 -1.79 16 33 H 0.12 -1.32 7.65 -2.39 -0.02 -1.34 16 34 H 0.13 -1.36 7.67 -2.39 -0.02 -1.38 16 35 H 0.40 -4.02 8.83 -215.50 -1.90 -5.92 16 36 H 0.07 -0.10 8.03 -2.39 -0.02 -0.12 16 37 H 0.06 -0.43 7.78 -2.39 -0.02 -0.44 16 38 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 40 H 0.09 -0.64 7.99 -2.39 -0.02 -0.66 16 41 H 0.08 -0.39 7.99 -2.39 -0.02 -0.40 16 42 H 0.07 -0.40 7.96 -2.39 -0.02 -0.41 16 43 H 0.07 -0.43 7.96 -2.38 -0.02 -0.45 16 44 H 0.08 -0.59 7.96 -2.39 -0.02 -0.61 16 45 H 0.06 0.31 7.96 -2.39 -0.02 0.29 16 46 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 47 H 0.06 0.10 7.96 -2.39 -0.02 0.08 16 48 H 0.08 -0.61 7.92 -2.38 -0.02 -0.63 16 49 H 0.08 -0.17 7.99 -2.39 -0.02 -0.19 16 50 H 0.08 0.62 7.82 -2.39 -0.02 0.60 16 51 H 0.38 2.77 8.60 -74.06 -0.64 2.13 16 52 H 0.14 0.94 4.89 -2.91 -0.01 0.93 16 Total: 0.00 -25.04 418.09 3.00 -22.04 By element: Atomic # 1 Polarization: -16.10 SS G_CDS: -0.88 Total: -16.99 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 6.73 Total: 12.35 kcal Atomic # 7 Polarization: 1.29 SS G_CDS: -2.20 Total: -0.91 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -3.23 Total: -19.83 kcal Atomic # 14 Polarization: 0.75 SS G_CDS: 2.59 Total: 3.34 kcal Total: -25.04 3.00 -22.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_4974302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.762 kcal (2) G-P(sol) polarization free energy of solvation -25.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds