Wall clock time and date at job start Sun Mar 7 2021 09:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35900 * 117.00090 * 2 1 4 4 C 1.38746 * 120.03036 * 0.02562 * 3 2 1 5 5 C 1.38196 * 120.05890 * 179.72197 * 4 3 2 6 6 C 1.38155 * 120.10490 * 0.51759 * 5 4 3 7 7 C 1.50701 * 119.96977 * 179.76352 * 6 5 4 8 8 O 1.42894 * 109.47221 * 254.71988 * 7 6 5 9 9 Si 1.86305 * 109.47205 * 14.72187 * 7 6 5 10 10 H 1.48493 * 109.47315 * 59.99984 * 9 7 6 11 11 H 1.48503 * 109.47100 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46648 * 299.99718 * 9 7 6 13 13 C 1.38788 * 120.05563 * 359.48244 * 6 5 4 14 14 O 1.35902 * 120.02556 * 180.28044 * 13 6 5 15 15 C 1.42905 * 116.99540 * 180.02562 * 14 13 6 16 16 C 1.50707 * 109.46748 * 179.97438 * 15 14 13 17 17 O 1.21276 * 119.99681 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99822 * 179.97438 * 16 15 14 19 19 N 1.36597 * 119.99784 * 174.99075 * 18 16 15 20 20 C 1.46362 * 110.99588 * 111.10642 * 19 18 16 21 21 C 1.52629 * 111.88710 * 203.19272 * 20 19 18 22 22 C 1.53920 * 109.31675 * 283.47592 * 21 20 19 23 23 Si 1.87526 * 106.84633 * 57.20651 * 22 21 20 24 24 C 1.86304 * 110.00231 * 196.90122 * 23 22 21 25 25 C 1.86300 * 110.00295 * 75.50396 * 23 22 21 26 26 C 1.47728 * 111.00375 * 235.45050 * 19 18 16 27 27 C 1.38610 * 119.94691 * 0.26003 * 13 6 5 28 28 H 1.08999 * 109.47152 * 300.00418 * 1 2 3 29 29 H 1.09005 * 109.47175 * 60.00191 * 1 2 3 30 30 H 1.08998 * 109.47129 * 180.02562 * 1 2 3 31 31 H 1.08007 * 119.96908 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.94800 * 180.27439 * 5 4 3 33 33 H 1.08999 * 109.47248 * 134.72196 * 7 6 5 34 34 H 0.96702 * 113.99888 * 59.99993 * 8 7 6 35 35 H 1.08995 * 109.47505 * 299.99697 * 15 14 13 36 36 H 1.09002 * 109.47154 * 60.00247 * 15 14 13 37 37 H 0.96997 * 120.00220 * 354.99761 * 18 16 15 38 38 H 1.08990 * 108.99722 * 323.81691 * 20 19 18 39 39 H 1.08998 * 108.99653 * 82.57973 * 20 19 18 40 40 H 1.09004 * 109.49580 * 163.52340 * 21 20 19 41 41 H 1.08999 * 109.52440 * 43.44901 * 21 20 19 42 42 H 1.08997 * 109.98021 * 297.87372 * 22 21 20 43 43 H 1.08997 * 110.05936 * 176.58112 * 22 21 20 44 44 H 1.08999 * 109.46898 * 177.27208 * 24 23 22 45 45 H 1.08994 * 109.47336 * 297.27477 * 24 23 22 46 46 H 1.09003 * 109.46779 * 57.27285 * 24 23 22 47 47 H 1.08996 * 109.46929 * 302.72924 * 25 23 22 48 48 H 1.09000 * 109.47108 * 62.72604 * 25 23 22 49 49 H 1.09006 * 109.47096 * 182.72612 * 25 23 22 50 50 H 1.08997 * 109.94653 * 294.89541 * 26 19 18 51 51 H 1.09007 * 109.94272 * 56.14486 * 26 19 18 52 52 H 1.08003 * 120.05434 * 179.97438 * 27 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2909 2.3749 0.0005 5 6 1.9177 3.6065 0.0063 6 6 3.2972 3.6821 0.0008 7 6 3.9775 5.0268 0.0018 8 8 4.5039 5.2952 -1.2992 9 14 2.7438 6.3466 0.4570 10 1 2.1968 6.0677 1.8090 11 1 3.4144 7.6716 0.4586 12 1 1.6372 6.3524 -0.5333 13 6 4.0569 2.5206 0.0003 14 8 5.4139 2.5956 0.0006 15 6 6.1318 1.3600 -0.0005 16 6 7.6127 1.6397 -0.0006 17 8 8.0137 2.7842 0.0007 18 7 8.4914 0.6178 -0.0011 19 7 9.8302 0.8683 -0.1045 20 6 10.5208 0.5537 1.1471 21 6 11.8362 1.3165 1.2785 22 6 12.8989 0.6574 0.3810 23 14 12.2146 0.6623 -1.3649 24 6 13.1626 -0.5419 -2.4243 25 6 12.3263 2.3754 -2.0884 26 6 10.4201 0.1336 -1.2423 27 6 3.4306 1.2841 -0.0002 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2123 2.3184 0.0005 32 1 1.3282 4.5114 0.0112 33 1 4.7898 5.0225 0.7286 34 1 3.8355 5.3141 -1.9978 35 1 5.8700 0.7868 0.8888 36 1 5.8703 0.7887 -0.8912 37 1 8.1732 -0.2956 0.0718 38 1 9.8740 0.8148 1.9845 39 1 10.7264 -0.5162 1.1796 40 1 12.1695 1.2909 2.3160 41 1 11.6897 2.3513 0.9689 42 1 13.0788 -0.3668 0.7076 43 1 13.8266 1.2284 0.4189 44 1 12.7274 -0.5678 -3.4233 45 1 14.2039 -0.2266 -2.4897 46 1 13.1112 -1.5357 -1.9796 47 1 11.7892 3.0756 -1.4487 48 1 13.3725 2.6739 -2.1558 49 1 11.8826 2.3790 -3.0840 50 1 10.3600 -0.9398 -1.0631 51 1 9.8937 0.3881 -2.1622 52 1 4.0201 0.3791 -0.0010 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_4974312.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:25:37 Heat of formation + Delta-G solvation = -108.202097 kcal Electronic energy + Delta-G solvation = -31674.932259 eV Core-core repulsion = 27379.513197 eV Total energy + Delta-G solvation = -4295.419062 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.177 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.84802 -41.03251 -39.99831 -38.72218 -38.05577 -36.91799 -34.97659 -32.39607 -32.17504 -31.20393 -29.36017 -29.09459 -28.36051 -28.34713 -27.51424 -26.11412 -24.88988 -23.54495 -22.49815 -21.89311 -21.70845 -19.98348 -18.94782 -18.29913 -18.00219 -17.65529 -17.56494 -17.17406 -16.75782 -16.58430 -16.45050 -15.94294 -15.87353 -15.29234 -15.20515 -15.07971 -14.88632 -14.76919 -14.59831 -14.32018 -13.97233 -13.91809 -13.80224 -13.50450 -13.48505 -13.34018 -13.19107 -13.17950 -13.11267 -12.96665 -12.48661 -12.26512 -12.18671 -12.03578 -11.99493 -11.95903 -11.64773 -11.58411 -11.33290 -10.81337 -10.74832 -10.42361 -10.31762 -10.22447 -9.72112 -9.65560 -9.11645 0.17393 0.28551 1.12841 1.18043 1.42650 1.49435 1.53394 1.75841 1.89927 1.92769 2.01266 2.22797 2.47485 2.55307 2.62534 3.30924 3.60082 3.61539 3.68665 3.84102 3.92987 4.00876 4.03353 4.04546 4.15010 4.16509 4.32618 4.39356 4.39765 4.42761 4.44167 4.53183 4.67546 4.67830 4.73935 4.76352 4.80521 4.81716 4.85484 4.86637 4.92366 5.00684 5.09366 5.21217 5.24725 5.30193 5.44152 5.47642 5.59400 5.66565 5.80525 6.09930 6.17770 6.32700 6.41928 6.80534 7.46422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.164 3.836 4 C -0.238 4.238 5 C -0.049 4.049 6 C -0.199 4.199 7 C -0.076 4.076 8 O -0.554 6.554 9 Si 0.991 3.009 10 H -0.252 1.252 11 H -0.280 1.280 12 H -0.232 1.232 13 C 0.180 3.820 14 O -0.300 6.300 15 C 0.041 3.959 16 C 0.527 3.473 17 O -0.546 6.546 18 N -0.572 5.572 19 N -0.303 5.303 20 C 0.027 3.973 21 C -0.104 4.104 22 C -0.415 4.415 23 Si 1.095 2.905 24 C -0.452 4.452 25 C -0.468 4.468 26 C -0.270 4.270 27 C -0.251 4.251 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.096 0.904 34 H 0.384 0.616 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.398 0.602 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.054 0.946 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.075 0.925 51 H 0.085 0.915 52 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 -7.828 0.024 8.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.117 3.883 4 C -0.257 4.257 5 C -0.067 4.067 6 C -0.200 4.200 7 C -0.185 4.185 8 O -0.361 6.361 9 Si 0.813 3.187 10 H -0.176 1.176 11 H -0.205 1.205 12 H -0.155 1.155 13 C 0.133 3.867 14 O -0.212 6.212 15 C -0.038 4.038 16 C 0.313 3.687 17 O -0.420 6.420 18 N -0.319 5.319 19 N -0.119 5.119 20 C -0.101 4.101 21 C -0.143 4.143 22 C -0.500 4.500 23 Si 1.284 2.716 24 C -0.561 4.561 25 C -0.573 4.573 26 C -0.441 4.441 27 C -0.270 4.270 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.174 0.826 32 H 0.168 0.832 33 H 0.114 0.886 34 H 0.232 0.768 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.239 0.761 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.073 0.927 48 H 0.090 0.910 49 H 0.081 0.919 50 H 0.094 0.906 51 H 0.103 0.897 52 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.845 -5.884 0.483 6.553 hybrid contribution -0.533 -1.540 -0.175 1.639 sum -3.378 -7.423 0.308 8.162 Atomic orbital electron populations 1.23398 0.76047 1.05714 1.02630 1.86053 1.23714 1.26528 1.87964 1.18854 0.91680 0.84919 0.92811 1.21382 1.01585 0.91298 1.11429 1.20930 0.92211 0.98805 0.94754 1.19700 0.93414 0.94484 1.12427 1.24977 1.05962 0.98817 0.88725 1.86570 1.38863 1.93709 1.16964 0.85187 0.76615 0.75887 0.81044 1.17599 1.20548 1.15509 1.18541 0.81684 0.93089 0.93338 1.86225 1.15434 1.31430 1.88065 1.22638 0.87998 0.86504 1.06680 1.20370 0.87501 0.84885 0.75951 1.90753 1.80383 1.22844 1.48007 1.45227 1.01825 1.08792 1.76008 1.62947 0.88897 1.55485 1.04606 1.22586 0.96457 1.00090 0.90966 1.21200 0.92610 0.99499 1.00984 1.26452 1.02873 1.03988 1.16713 0.78259 0.62110 0.64909 0.66357 1.26128 1.08890 1.11334 1.09750 1.26380 1.04067 1.20310 1.06564 1.28263 1.19822 1.01031 0.94981 1.20571 0.93359 0.97489 1.15606 0.91367 0.91351 0.86483 0.82600 0.83192 0.88618 0.76766 0.85852 0.86135 0.76084 0.91293 0.91671 0.90424 0.92237 0.89286 0.89844 0.91012 0.90498 0.90254 0.92689 0.90968 0.91880 0.90620 0.89673 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.45 10.49 -92.42 -0.97 -1.42 16 3 C 0.16 0.42 6.68 22.49 0.15 0.57 16 4 C -0.24 -0.06 9.04 22.38 0.20 0.14 16 5 C -0.05 -0.07 8.65 22.24 0.19 0.13 16 6 C -0.20 -1.09 5.28 -19.75 -0.10 -1.20 16 7 C -0.08 -0.49 2.37 71.24 0.17 -0.32 16 8 O -0.55 -4.89 12.88 -148.98 -1.92 -6.80 16 9 Si 0.99 1.86 25.48 68.60 1.75 3.60 16 10 H -0.25 -0.52 7.11 99.48 0.71 0.19 16 11 H -0.28 -1.74 7.11 99.48 0.71 -1.04 16 12 H -0.23 0.39 6.74 99.48 0.67 1.06 16 13 C 0.18 1.17 6.66 22.49 0.15 1.32 16 14 O -0.30 -2.81 9.00 -73.41 -0.66 -3.47 16 15 C 0.04 0.05 5.22 71.24 0.37 0.42 16 16 C 0.53 3.95 8.01 87.66 0.70 4.65 16 17 O -0.55 -10.62 16.83 16.02 0.27 -10.35 16 18 N -0.57 -0.67 4.71 -173.53 -0.82 -1.49 16 19 N -0.30 -0.89 4.15 -334.13 -1.39 -2.28 16 20 C 0.03 0.00 5.38 86.28 0.46 0.47 16 21 C -0.10 -0.03 5.74 30.78 0.18 0.14 16 22 C -0.41 1.47 5.04 72.29 0.36 1.83 16 23 Si 1.10 -4.71 11.99 68.60 0.82 -3.89 16 24 C -0.45 2.37 8.65 113.37 0.98 3.35 16 25 C -0.47 -1.02 8.65 113.37 0.98 -0.04 16 26 C -0.27 0.54 4.85 127.53 0.62 1.16 16 27 C -0.25 -0.74 8.97 22.46 0.20 -0.54 16 28 H 0.07 -0.51 7.66 -2.39 -0.02 -0.53 16 29 H 0.07 -0.52 7.66 -2.38 -0.02 -0.53 16 30 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 31 H 0.16 -0.78 6.29 -2.91 -0.02 -0.80 16 32 H 0.15 -0.44 4.87 -2.91 -0.01 -0.45 16 33 H 0.10 0.94 7.82 -2.39 -0.02 0.92 16 34 H 0.38 0.13 8.70 -74.06 -0.64 -0.52 16 35 H 0.12 -0.66 7.66 -2.39 -0.02 -0.67 16 36 H 0.12 -0.52 7.66 -2.39 -0.02 -0.54 16 37 H 0.40 -2.58 8.83 -215.50 -1.90 -4.48 16 38 H 0.07 0.14 8.03 -2.39 -0.02 0.12 16 39 H 0.07 -0.28 7.78 -2.39 -0.02 -0.30 16 40 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.06 0.26 7.96 -2.39 -0.02 0.25 16 42 H 0.09 -0.53 7.99 -2.39 -0.02 -0.55 16 43 H 0.08 -0.31 7.99 -2.39 -0.02 -0.33 16 44 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16 45 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 46 H 0.08 -0.52 7.96 -2.39 -0.02 -0.54 16 47 H 0.05 0.38 7.96 -2.39 -0.02 0.36 16 48 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 49 H 0.06 0.17 7.96 -2.38 -0.02 0.15 16 50 H 0.08 -0.47 7.92 -2.39 -0.02 -0.49 16 51 H 0.08 -0.03 7.99 -2.38 -0.02 -0.05 16 52 H 0.15 -0.26 6.30 -2.91 -0.02 -0.27 16 Total: 0.00 -26.86 418.67 2.93 -23.93 By element: Atomic # 1 Polarization: -10.04 SS G_CDS: -0.89 Total: -10.93 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 6.73 Total: 13.10 kcal Atomic # 7 Polarization: -1.57 SS G_CDS: -2.20 Total: -3.77 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -3.28 Total: -22.05 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: 2.57 Total: -0.29 kcal Total: -26.86 2.93 -23.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_4974312.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.270 kcal (2) G-P(sol) polarization free energy of solvation -26.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds