Wall clock time and date at job start Sun Mar 7 2021 09:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37644 * 125.67320 * 2 1 4 4 C 1.46680 * 126.22340 * 0.02562 * 3 2 1 5 5 O 1.21698 * 119.99757 * 186.94452 * 4 3 2 6 6 N 1.34775 * 119.99882 * 6.94181 * 4 3 2 7 7 N 1.36604 * 119.99515 * 175.35337 * 6 4 3 8 8 C 1.46352 * 111.00126 * 113.47010 * 7 6 4 9 9 C 1.52624 * 111.89427 * 156.80180 * 8 7 6 10 10 C 1.53928 * 109.31107 * 76.52008 * 9 8 7 11 11 Si 1.87527 * 106.85044 * 302.80147 * 10 9 8 12 12 C 1.86293 * 110.00184 * 163.09778 * 11 10 9 13 13 C 1.86295 * 109.99932 * 284.39805 * 11 10 9 14 14 C 1.47721 * 111.00052 * 349.12074 * 7 6 4 15 15 C 1.37875 * 107.54944 * 180.02562 * 3 2 1 16 16 C 1.39882 * 107.09431 * 0.02562 * 15 3 2 17 17 Br 1.89103 * 126.07433 * 179.97438 * 16 15 3 18 18 C 1.35506 * 107.85139 * 359.97438 * 16 15 3 19 19 C 1.50700 * 125.57183 * 180.25964 * 18 16 15 20 20 O 1.42894 * 109.47216 * 303.11902 * 19 18 16 21 21 Si 1.86301 * 109.46511 * 63.11445 * 19 18 16 22 22 H 1.48501 * 109.47348 * 63.67204 * 21 19 18 23 23 H 1.48502 * 109.47098 * 183.66817 * 21 19 18 24 24 H 1.48503 * 109.47641 * 303.66788 * 21 19 18 25 25 H 1.08998 * 109.47469 * 278.00727 * 1 2 3 26 26 H 1.08999 * 109.47270 * 38.01097 * 1 2 3 27 27 H 1.09006 * 109.47021 * 158.00656 * 1 2 3 28 28 H 0.96998 * 120.00260 * 355.35643 * 6 4 3 29 29 H 1.08998 * 108.99915 * 277.42349 * 8 7 6 30 30 H 1.09003 * 108.99562 * 36.26123 * 8 7 6 31 31 H 1.09003 * 109.49929 * 196.47557 * 9 8 7 32 32 H 1.09005 * 109.49532 * 316.57392 * 9 8 7 33 33 H 1.08999 * 109.97381 * 62.13221 * 10 9 8 34 34 H 1.08997 * 109.97622 * 183.36902 * 10 9 8 35 35 H 1.09003 * 109.47289 * 59.99799 * 12 11 10 36 36 H 1.09000 * 109.47421 * 179.97438 * 12 11 10 37 37 H 1.09006 * 109.47385 * 300.00051 * 12 11 10 38 38 H 1.09009 * 109.47045 * 60.00277 * 13 11 10 39 39 H 1.09003 * 109.47111 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.47800 * 300.00125 * 13 11 10 41 41 H 1.09003 * 109.94805 * 303.86097 * 14 7 6 42 42 H 1.08998 * 109.94939 * 65.11365 * 14 7 6 43 43 H 1.08002 * 126.45437 * 180.02562 * 15 3 2 44 44 H 1.08994 * 109.46911 * 183.11332 * 19 18 16 45 45 H 0.96700 * 114.00771 * 59.99684 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2677 1.1182 0.0000 4 6 1.8119 2.5123 0.0005 5 8 2.6173 3.4158 -0.1270 6 7 0.5013 2.7928 0.1421 7 7 0.0872 4.0910 0.2380 8 6 -0.7110 4.4743 -0.9273 9 6 -1.6347 5.6505 -0.6225 10 6 -0.8123 6.9515 -0.6016 11 14 0.5367 6.7213 0.6805 12 6 1.8734 7.9955 0.4349 13 6 -0.1798 6.8723 2.3935 14 6 1.2360 5.0007 0.4245 15 6 3.5781 0.6893 -0.0006 16 6 3.5529 -0.7093 -0.0015 17 35 5.0611 -1.8501 -0.0033 18 6 2.2559 -1.1015 -0.0009 19 6 1.7714 -2.5285 0.0039 20 8 2.3161 -3.2203 -1.1215 21 14 2.3231 -3.3660 1.5740 22 1 1.6861 -2.7017 2.7395 23 1 1.9227 -4.7956 1.5395 24 1 3.7999 -3.2683 1.6948 25 1 -0.3634 0.1431 1.0176 26 1 -0.3634 0.8097 -0.6328 27 1 -0.3633 -0.9529 -0.3849 28 1 -0.1478 2.0728 0.1761 29 1 -0.0407 4.7512 -1.7410 30 1 -1.3147 3.6222 -1.2397 31 1 -2.4035 5.7183 -1.3922 32 1 -2.1046 5.5015 0.3497 33 1 -0.3686 7.1273 -1.5815 34 1 -1.4505 7.7910 -0.3261 35 1 1.4474 8.9935 0.5378 36 1 2.6522 7.8542 1.1842 37 1 2.3025 7.8846 -0.5610 38 1 -0.9442 6.1084 2.5362 39 1 0.6112 6.7376 3.1314 40 1 -0.6255 7.8595 2.5153 41 1 1.8110 4.6990 1.2999 42 1 1.8703 4.9852 -0.4617 43 1 4.4582 1.3152 -0.0004 44 1 0.6831 -2.5429 -0.0525 45 1 3.2826 -3.2471 -1.1368 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_5000100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:29:43 Heat of formation + Delta-G solvation = 19.105407 kcal Electronic energy + Delta-G solvation = -26877.051381 eV Core-core repulsion = 23103.037017 eV Total energy + Delta-G solvation = -3774.014364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 389.068 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.04786 -41.41145 -38.23127 -37.88883 -35.44045 -34.37547 -32.56868 -31.94390 -30.52855 -29.33838 -28.35107 -27.77555 -27.48992 -27.01575 -25.09575 -23.11187 -21.87406 -21.64268 -20.86673 -19.15881 -18.71969 -18.00626 -17.35669 -16.85216 -16.38604 -16.26402 -15.97616 -15.75001 -15.05023 -15.03131 -14.72156 -14.67943 -14.39929 -14.27588 -14.14401 -14.04730 -13.91705 -13.78493 -13.54647 -13.30009 -13.21120 -13.07349 -12.93645 -12.79272 -12.68333 -12.33760 -12.22420 -12.00204 -11.80145 -11.77195 -11.53463 -10.92796 -10.78758 -10.77357 -10.39799 -9.89993 -9.84652 -9.39083 -8.96134 0.03244 0.47632 0.82231 1.11872 1.40072 1.44118 1.50811 1.67145 1.83301 1.95463 1.96172 2.03988 2.09662 2.64243 3.06753 3.13348 3.38245 3.51644 3.62265 3.77984 3.98246 4.14337 4.17827 4.24256 4.42362 4.45302 4.53432 4.54112 4.57765 4.72223 4.75781 4.77814 4.79385 4.87433 4.91388 5.07225 5.14224 5.22923 5.31531 5.37882 5.46774 5.51320 5.58554 5.68174 5.74660 6.07803 6.28214 6.28766 7.18027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.402 5.402 3 C -0.053 4.053 4 C 0.573 3.427 5 O -0.552 6.552 6 N -0.572 5.572 7 N -0.276 5.276 8 C 0.005 3.995 9 C -0.096 4.096 10 C -0.411 4.411 11 Si 1.058 2.942 12 C -0.462 4.462 13 C -0.446 4.446 14 C -0.249 4.249 15 C -0.089 4.089 16 C -0.196 4.196 17 Br -0.015 7.015 18 C 0.065 3.935 19 C -0.062 4.062 20 O -0.539 6.539 21 Si 0.944 3.056 22 H -0.252 1.252 23 H -0.246 1.246 24 H -0.225 1.225 25 H 0.118 0.882 26 H 0.102 0.898 27 H 0.131 0.869 28 H 0.426 0.574 29 H 0.033 0.967 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 -1.127 0.773 7.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.078 5.078 3 C -0.168 4.168 4 C 0.360 3.640 5 O -0.431 6.431 6 N -0.320 5.320 7 N -0.090 5.090 8 C -0.123 4.123 9 C -0.135 4.135 10 C -0.497 4.497 11 Si 1.249 2.751 12 C -0.569 4.569 13 C -0.554 4.554 14 C -0.420 4.420 15 C -0.117 4.117 16 C -0.282 4.282 17 Br 0.069 6.931 18 C -0.057 4.057 19 C -0.172 4.172 20 O -0.346 6.346 21 Si 0.762 3.238 22 H -0.175 1.175 23 H -0.169 1.169 24 H -0.147 1.147 25 H 0.136 0.864 26 H 0.120 0.880 27 H 0.149 0.851 28 H 0.275 0.725 29 H 0.052 0.948 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.169 0.831 44 H 0.168 0.832 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -7.399 -1.375 1.711 7.718 hybrid contribution 0.972 0.281 -1.162 1.541 sum -6.426 -1.094 0.549 6.542 Atomic orbital electron populations 1.22996 0.73688 1.07834 1.06651 1.44124 1.07887 1.03621 1.52126 1.20517 0.90850 0.86685 1.18721 1.17695 0.83297 0.86301 0.76712 1.90928 1.55990 1.44599 1.51598 1.46152 1.06680 1.05708 1.73448 1.64539 1.18633 0.89611 1.36189 1.22891 0.97016 1.00770 0.91617 1.21178 0.97021 0.91421 1.03854 1.26355 1.11569 1.00398 1.11419 0.78855 0.65648 0.63010 0.67632 1.26259 1.13363 1.12934 1.04368 1.26074 1.06901 1.04852 1.17573 1.28333 0.96312 1.12396 1.04996 1.21199 0.95900 0.92769 1.01828 1.20845 0.91799 0.94440 1.21091 1.96635 1.36967 1.61467 1.98052 1.21072 0.89241 0.90760 1.04636 1.24898 1.04691 0.86222 1.01372 1.86520 1.27180 1.75649 1.45262 0.85674 0.83934 0.80075 0.74086 1.17524 1.16946 1.14651 0.86379 0.88033 0.85116 0.72525 0.94809 0.88942 0.89831 0.89646 0.90919 0.89130 0.90261 0.91714 0.91793 0.90611 0.91958 0.90688 0.91045 0.91153 0.83131 0.83240 0.76899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.31 9.32 127.77 1.19 0.88 16 2 N -0.40 0.57 3.16 -519.60 -1.64 -1.07 16 3 C -0.05 -0.25 6.88 40.35 0.28 0.03 16 4 C 0.57 3.78 7.51 86.45 0.65 4.43 16 5 O -0.55 -7.41 12.35 -4.34 -0.05 -7.46 16 6 N -0.57 -0.17 5.41 -176.38 -0.95 -1.12 16 7 N -0.28 -0.21 5.00 -334.16 -1.67 -1.88 16 8 C 0.01 -0.01 5.38 86.28 0.46 0.45 16 9 C -0.10 0.46 5.74 30.78 0.18 0.64 16 10 C -0.41 1.65 5.03 72.30 0.36 2.01 16 11 Si 1.06 -2.79 11.99 68.60 0.82 -1.97 16 12 C -0.46 -0.07 8.65 113.37 0.98 0.91 16 13 C -0.45 0.85 8.65 113.37 0.98 1.84 16 14 C -0.25 -1.05 2.87 127.53 0.37 -0.69 16 15 C -0.09 -0.63 10.64 22.58 0.24 -0.39 16 16 C -0.20 -0.88 6.07 22.04 0.13 -0.74 16 17 Br -0.02 -0.05 28.71 -20.37 -0.58 -0.63 16 18 C 0.07 0.05 5.34 41.35 0.22 0.27 16 19 C -0.06 0.17 2.82 71.24 0.20 0.38 16 20 O -0.54 -0.47 12.88 -148.98 -1.92 -2.38 16 21 Si 0.94 -1.73 26.79 68.60 1.84 0.11 16 22 H -0.25 0.21 7.11 99.48 0.71 0.92 16 23 H -0.25 0.11 7.11 99.48 0.71 0.81 16 24 H -0.22 -0.01 5.42 99.48 0.54 0.52 16 25 H 0.12 -1.80 8.08 -2.39 -0.02 -1.82 16 26 H 0.10 -1.35 6.06 -2.39 -0.01 -1.36 16 27 H 0.13 -2.05 6.60 -2.38 -0.02 -2.06 16 28 H 0.43 -2.76 4.50 -215.50 -0.97 -3.73 16 29 H 0.03 0.03 7.78 -2.39 -0.02 0.01 16 30 H 0.09 -0.56 8.03 -2.39 -0.02 -0.58 16 31 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.08 -0.51 7.96 -2.38 -0.02 -0.53 16 33 H 0.07 -0.22 7.99 -2.39 -0.02 -0.24 16 34 H 0.09 -0.51 8.00 -2.39 -0.02 -0.53 16 35 H 0.08 -0.12 7.96 -2.39 -0.02 -0.13 16 36 H 0.06 0.09 7.96 -2.39 -0.02 0.07 16 37 H 0.06 0.08 7.96 -2.38 -0.02 0.07 16 38 H 0.07 -0.15 7.96 -2.38 -0.02 -0.17 16 39 H 0.06 -0.03 7.96 -2.39 -0.02 -0.05 16 40 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 41 H 0.07 0.58 7.09 -2.39 -0.02 0.56 16 42 H 0.07 0.64 5.84 -8.10 -0.05 0.60 16 43 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 44 H 0.15 -1.38 6.29 -2.39 -0.02 -1.40 16 45 H 0.38 -0.21 6.30 -74.06 -0.47 -0.67 16 Total: 0.00 -17.99 365.35 2.22 -15.77 By element: Atomic # 1 Polarization: -9.49 SS G_CDS: 0.14 Total: -9.36 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.25 Total: 10.01 kcal Atomic # 7 Polarization: 0.19 SS G_CDS: -4.27 Total: -4.08 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -1.97 Total: -9.85 kcal Atomic # 14 Polarization: -4.52 SS G_CDS: 2.66 Total: -1.86 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -0.58 Total: -0.63 kcal Total: -17.99 2.22 -15.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_5000100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.876 kcal (2) G-P(sol) polarization free energy of solvation -17.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds