Wall clock time and date at job start Sun Mar 7 2021 09:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36000 * 117.00131 * 2 1 4 4 C 1.38526 * 120.06786 * 359.97225 * 3 2 1 5 5 C 1.38289 * 119.99318 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.92396 * 180.02562 * 5 4 3 7 7 O 1.42898 * 109.47203 * 299.99820 * 6 5 4 8 8 Si 1.86300 * 109.47140 * 179.97438 * 6 5 4 9 9 H 1.48493 * 109.47094 * 59.99732 * 8 6 5 10 10 H 1.48504 * 109.47424 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46877 * 299.99878 * 8 6 5 12 12 C 1.38211 * 120.14727 * 359.97438 * 5 4 3 13 13 C 1.38282 * 120.14855 * 359.77017 * 12 5 4 14 14 C 1.38530 * 119.99510 * 0.50701 * 13 12 5 15 15 O 1.35996 * 120.06732 * 179.74399 * 14 13 12 16 16 C 1.42901 * 117.00512 * 359.72329 * 15 14 13 17 17 C 1.50693 * 109.47147 * 180.02562 * 16 15 14 18 18 O 1.21277 * 120.00234 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99760 * 180.02562 * 17 16 15 20 20 N 1.36601 * 119.99800 * 184.73330 * 19 17 16 21 21 C 1.46361 * 110.99934 * 111.06887 * 20 19 17 22 22 C 1.52625 * 111.88927 * 203.19515 * 21 20 19 23 23 C 1.53926 * 109.31315 * 283.47733 * 22 21 20 24 24 Si 1.87528 * 106.84964 * 57.20569 * 23 22 21 25 25 C 1.86305 * 110.00262 * 196.90363 * 24 23 22 26 26 C 1.86299 * 110.00030 * 75.50348 * 24 23 22 27 27 C 1.47731 * 111.00216 * 235.41915 * 20 19 17 28 28 H 1.09004 * 109.47295 * 300.00407 * 1 2 3 29 29 H 1.09007 * 109.46957 * 60.00321 * 1 2 3 30 30 H 1.08995 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.07988 * 120.00477 * 0.02562 * 4 3 2 32 32 H 1.09000 * 109.47435 * 59.99971 * 6 5 4 33 33 H 0.96700 * 114.00016 * 300.00183 * 7 6 5 34 34 H 1.08001 * 119.92304 * 180.02562 * 12 5 4 35 35 H 1.08000 * 120.00297 * 180.27552 * 13 12 5 36 36 H 1.09002 * 109.46784 * 60.00075 * 16 15 14 37 37 H 1.08997 * 109.47005 * 300.00676 * 16 15 14 38 38 H 0.97000 * 120.00294 * 5.01012 * 19 17 16 39 39 H 1.08994 * 108.99647 * 323.81752 * 21 20 19 40 40 H 1.09001 * 108.99634 * 82.57412 * 21 20 19 41 41 H 1.09002 * 109.49312 * 163.52884 * 22 21 20 42 42 H 1.08996 * 109.52398 * 43.44441 * 22 21 20 43 43 H 1.09001 * 109.97654 * 297.87248 * 23 22 21 44 44 H 1.08996 * 110.05486 * 176.58254 * 23 22 21 45 45 H 1.08997 * 109.46610 * 177.27529 * 25 24 23 46 46 H 1.09004 * 109.46830 * 297.27200 * 25 24 23 47 47 H 1.08998 * 109.47002 * 57.27167 * 25 24 23 48 48 H 1.08995 * 109.46985 * 302.72449 * 26 24 23 49 49 H 1.09000 * 109.47050 * 62.72805 * 26 24 23 50 50 H 1.09003 * 109.46966 * 182.72940 * 26 24 23 51 51 H 1.09006 * 109.94180 * 294.88792 * 27 20 19 52 52 H 1.08994 * 109.94603 * 56.14261 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2934 2.3744 -0.0006 5 6 1.9229 3.6058 -0.0011 6 6 1.1021 4.8696 -0.0012 7 8 0.2773 4.9020 -1.1677 8 14 2.2370 6.3471 -0.0011 9 1 3.0937 6.3132 -1.2135 10 1 1.4282 7.5926 -0.0006 11 1 3.0936 6.3132 1.2114 12 6 3.3030 3.6798 -0.0005 13 6 4.0606 2.5230 0.0054 14 6 3.4363 1.2863 0.0001 15 8 4.1800 0.1477 0.0007 16 6 5.6008 0.3007 0.0006 17 6 6.2523 -1.0582 0.0007 18 8 5.5674 -2.0591 0.0011 19 7 7.5961 -1.1612 0.0012 20 7 8.1871 -2.3889 -0.0965 21 6 8.8653 -2.5436 -1.3841 22 6 9.0327 -4.0117 -1.7663 23 6 10.1825 -4.6234 -0.9458 24 14 9.7512 -4.3765 0.8624 25 6 11.2697 -4.6067 1.9169 26 6 8.4292 -5.5857 1.3730 27 6 9.1142 -2.6213 1.0300 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2149 2.3193 -0.0006 32 1 0.4736 4.8948 0.8890 33 1 0.7709 4.8822 -1.9990 34 1 3.7908 4.6434 -0.0005 35 1 5.1389 2.5836 0.0103 36 1 5.9070 0.8508 0.8904 37 1 5.9070 0.8501 -0.8895 38 1 8.1437 -0.3639 0.0749 39 1 8.2819 -2.0405 -2.1552 40 1 9.8491 -2.0779 -1.3252 41 1 9.2639 -4.0869 -2.8289 42 1 8.1089 -4.5505 -1.5559 43 1 11.1178 -4.1144 -1.1784 44 1 10.2733 -5.6873 -1.1651 45 1 11.0201 -4.4139 2.9602 46 1 11.6326 -5.6293 1.8131 47 1 12.0449 -3.9116 1.5943 48 1 7.5548 -5.4591 0.7347 49 1 8.8085 -6.6026 1.2723 50 1 8.1508 -5.4028 2.4109 51 1 9.9451 -1.9176 0.9788 52 1 8.5858 -2.5062 1.9763 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_60476.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:29:54 Heat of formation + Delta-G solvation = -107.650046 kcal Electronic energy + Delta-G solvation = -31299.008825 eV Core-core repulsion = 27003.613702 eV Total energy + Delta-G solvation = -4295.395123 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.177 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.83410 -41.02834 -39.58905 -38.93058 -38.31030 -36.90931 -34.97041 -32.40308 -31.76961 -31.40469 -29.37359 -29.17232 -28.41609 -28.35358 -27.51956 -26.20229 -24.78096 -23.49215 -22.57231 -21.85801 -21.70054 -19.82290 -18.94182 -18.41419 -18.19135 -17.82057 -17.56739 -17.10950 -16.78099 -16.34776 -16.13022 -16.07882 -15.86107 -15.58904 -15.23878 -15.03303 -14.85005 -14.77527 -14.54531 -14.34427 -13.97022 -13.80850 -13.77637 -13.60040 -13.50107 -13.47450 -13.19278 -13.11656 -12.96624 -12.64127 -12.55062 -12.18562 -12.15901 -12.03718 -12.03119 -11.98697 -11.97192 -11.58134 -11.31954 -10.82170 -10.76292 -10.42235 -10.40362 -10.22769 -9.79007 -9.63798 -8.92607 0.15790 0.25358 1.15384 1.20673 1.49296 1.50996 1.55814 1.76962 1.89704 1.95420 2.02427 2.31182 2.45660 2.54850 2.62474 3.31099 3.50227 3.59517 3.70473 3.85160 3.86149 4.00371 4.02077 4.07410 4.14572 4.17220 4.26001 4.33678 4.36980 4.42982 4.53689 4.60266 4.65259 4.68209 4.68775 4.74077 4.79602 4.81224 4.84886 4.86418 4.92290 4.98993 5.09043 5.09414 5.30196 5.34778 5.47532 5.57449 5.58986 5.65811 5.81162 5.94440 6.18368 6.36480 6.53193 6.71636 7.47919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.079 3.921 4 C -0.147 4.147 5 C -0.117 4.117 6 C -0.081 4.081 7 O -0.554 6.554 8 Si 0.988 3.012 9 H -0.246 1.246 10 H -0.279 1.279 11 H -0.252 1.252 12 C -0.124 4.124 13 C -0.161 4.161 14 C 0.084 3.916 15 O -0.313 6.313 16 C 0.041 3.959 17 C 0.525 3.475 18 O -0.551 6.551 19 N -0.571 5.571 20 N -0.305 5.305 21 C 0.027 3.973 22 C -0.105 4.105 23 C -0.414 4.414 24 Si 1.095 2.905 25 C -0.453 4.453 26 C -0.469 4.469 27 C -0.269 4.269 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.148 0.852 32 H 0.123 0.877 33 H 0.389 0.611 34 H 0.146 0.854 35 H 0.172 0.828 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.400 0.600 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.053 0.947 49 H 0.071 0.929 50 H 0.061 0.939 51 H 0.076 0.924 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.919 5.226 -0.203 8.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.034 3.966 4 C -0.166 4.166 5 C -0.118 4.118 6 C -0.191 4.191 7 O -0.361 6.361 8 Si 0.811 3.189 9 H -0.170 1.170 10 H -0.205 1.205 11 H -0.176 1.176 12 C -0.142 4.142 13 C -0.179 4.179 14 C 0.039 3.961 15 O -0.226 6.226 16 C -0.038 4.038 17 C 0.311 3.689 18 O -0.425 6.425 19 N -0.318 5.318 20 N -0.122 5.122 21 C -0.101 4.101 22 C -0.144 4.144 23 C -0.500 4.500 24 Si 1.284 2.716 25 C -0.561 4.561 26 C -0.574 4.574 27 C -0.440 4.440 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.128 0.872 31 H 0.165 0.835 32 H 0.140 0.860 33 H 0.238 0.762 34 H 0.163 0.837 35 H 0.189 0.811 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.241 0.759 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.073 0.927 49 H 0.090 0.910 50 H 0.080 0.920 51 H 0.095 0.905 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.087 4.551 0.247 7.605 hybrid contribution 0.416 0.406 -0.317 0.662 sum 6.503 4.957 -0.070 8.177 Atomic orbital electron populations 1.23303 0.76695 1.05208 1.02266 1.86201 1.23111 1.26553 1.89025 1.18678 0.89781 0.85766 1.02415 1.21024 1.00739 0.90208 1.04626 1.20220 0.94136 0.95317 1.02114 1.25094 1.00639 1.01273 0.92053 1.86479 1.36536 1.96888 1.16201 0.85149 0.76970 0.75149 0.81607 1.16983 1.20490 1.17564 1.21004 0.92914 0.98905 1.01348 1.21321 1.02086 0.89488 1.05016 1.18568 0.88310 0.86327 1.02902 1.86218 1.17987 1.29086 1.89334 1.22662 0.79513 0.94642 1.06971 1.20480 0.81760 0.90784 0.75832 1.90748 1.63474 1.40138 1.48189 1.45217 1.05254 1.05354 1.75943 1.62909 1.33330 1.12689 1.03238 1.22594 0.98376 0.98960 0.90149 1.21210 0.98919 0.93583 1.00665 1.26444 1.01127 1.04348 1.18065 0.78254 0.64570 0.62360 0.66449 1.26131 1.14858 1.05475 1.09656 1.26397 1.13601 1.12321 1.05097 1.28226 0.98994 1.21276 0.95522 0.91559 0.91590 0.87207 0.83478 0.85954 0.76184 0.83676 0.81084 0.85573 0.85503 0.75922 0.91048 0.91541 0.90317 0.92321 0.89206 0.89899 0.91075 0.90534 0.90193 0.92723 0.91002 0.91984 0.90525 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 113.37 1.11 1.16 16 2 O -0.33 -3.89 10.28 -79.71 -0.82 -4.71 16 3 C 0.08 0.68 6.70 22.57 0.15 0.83 16 4 C -0.15 -0.57 8.60 22.35 0.19 -0.37 16 5 C -0.12 -0.07 5.39 -19.86 -0.11 -0.18 16 6 C -0.08 0.16 2.82 71.24 0.20 0.36 16 7 O -0.55 0.19 12.77 -148.98 -1.90 -1.71 16 8 Si 0.99 -3.31 25.07 68.60 1.72 -1.59 16 9 H -0.25 1.01 7.11 99.48 0.71 1.72 16 10 H -0.28 -0.23 7.11 99.48 0.71 0.47 16 11 H -0.25 0.78 7.11 99.48 0.71 1.49 16 12 C -0.12 0.17 8.66 22.27 0.19 0.36 16 13 C -0.16 0.13 9.04 22.35 0.20 0.33 16 14 C 0.08 0.57 6.70 22.57 0.15 0.72 16 15 O -0.31 -3.13 9.46 -67.09 -0.63 -3.76 16 16 C 0.04 -0.02 5.22 71.23 0.37 0.35 16 17 C 0.53 3.51 8.01 87.65 0.70 4.22 16 18 O -0.55 -10.74 16.83 16.02 0.27 -10.47 16 19 N -0.57 -0.01 4.71 -173.54 -0.82 -0.83 16 20 N -0.30 -0.66 4.15 -334.13 -1.39 -2.05 16 21 C 0.03 -0.03 5.38 86.28 0.46 0.44 16 22 C -0.11 0.06 5.74 30.78 0.18 0.23 16 23 C -0.41 1.72 5.04 72.29 0.36 2.08 16 24 Si 1.10 -5.13 11.99 68.60 0.82 -4.31 16 25 C -0.45 2.52 8.65 113.37 0.98 3.50 16 26 C -0.47 -0.99 8.65 113.37 0.98 0.00 16 27 C -0.27 0.67 4.85 127.53 0.62 1.29 16 28 H 0.07 0.00 7.66 -2.39 -0.02 -0.02 16 29 H 0.07 0.01 7.66 -2.38 -0.02 -0.01 16 30 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.15 0.25 6.30 -2.92 -0.02 0.23 16 32 H 0.12 -0.39 7.96 -2.39 -0.02 -0.41 16 33 H 0.39 -2.57 8.70 -74.06 -0.64 -3.22 16 34 H 0.15 -0.84 4.87 -2.91 -0.01 -0.85 16 35 H 0.17 -1.49 6.30 -2.91 -0.02 -1.51 16 36 H 0.13 -0.97 7.65 -2.39 -0.02 -0.98 16 37 H 0.13 -0.98 7.68 -2.39 -0.02 -1.00 16 38 H 0.40 -3.26 8.83 -215.50 -1.90 -5.16 16 39 H 0.07 0.02 8.03 -2.39 -0.02 0.01 16 40 H 0.07 -0.37 7.78 -2.39 -0.02 -0.39 16 41 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.06 0.22 7.96 -2.39 -0.02 0.20 16 43 H 0.09 -0.60 7.99 -2.39 -0.02 -0.62 16 44 H 0.08 -0.34 7.99 -2.39 -0.02 -0.36 16 45 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 46 H 0.08 -0.41 7.96 -2.38 -0.02 -0.42 16 47 H 0.08 -0.56 7.96 -2.39 -0.02 -0.58 16 48 H 0.05 0.38 7.96 -2.39 -0.02 0.36 16 49 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 50 H 0.06 0.17 7.96 -2.39 -0.02 0.15 16 51 H 0.08 -0.54 7.92 -2.38 -0.02 -0.56 16 52 H 0.08 -0.04 7.99 -2.39 -0.02 -0.06 16 Total: 0.00 -29.29 419.17 3.15 -26.14 By element: Atomic # 1 Polarization: -11.18 SS G_CDS: -0.85 Total: -12.03 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 6.76 Total: 15.33 kcal Atomic # 7 Polarization: -0.67 SS G_CDS: -2.20 Total: -2.88 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -3.09 Total: -20.66 kcal Atomic # 14 Polarization: -8.44 SS G_CDS: 2.54 Total: -5.90 kcal Total: -29.29 3.15 -26.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_60476.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.511 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds