Wall clock time and date at job start Sun Mar 7 2021 09:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 110.06356 * 2 1 4 4 C 1.87528 * 110.00262 * 238.63767 * 2 1 3 5 5 C 1.53926 * 106.84964 * 196.90363 * 4 2 1 6 6 C 1.52625 * 109.31315 * 57.20569 * 5 4 2 7 7 N 1.46361 * 111.88927 * 283.47733 * 6 5 4 8 8 N 1.36601 * 110.99934 * 203.19515 * 7 6 5 9 9 C 1.34780 * 119.99800 * 111.06887 * 8 7 6 10 10 O 1.21277 * 120.00006 * 4.73953 * 9 8 7 11 11 C 1.50693 * 119.99760 * 184.73330 * 9 8 7 12 12 O 1.42901 * 109.47147 * 180.02562 * 11 9 8 13 13 C 1.35920 * 117.00504 * 180.02562 * 12 11 9 14 14 C 1.38678 * 120.05161 * 359.72015 * 13 12 11 15 15 C 1.38196 * 119.94754 * 179.72417 * 14 13 12 16 16 C 1.38233 * 120.07120 * 0.53274 * 15 14 13 17 17 C 1.50706 * 119.93893 * 179.74590 * 16 15 14 18 18 O 1.42892 * 109.47271 * 120.02111 * 17 16 15 19 19 Si 1.86302 * 109.47252 * 0.02562 * 17 16 15 20 20 H 1.48508 * 109.46583 * 60.00113 * 19 17 16 21 21 H 1.48498 * 109.47161 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47183 * 300.00305 * 19 17 16 23 23 C 1.38282 * 120.12236 * 359.76290 * 16 15 14 24 24 C 1.38200 * 120.04358 * 359.96074 * 23 16 15 25 25 Br 1.89093 * 120.03676 * 179.97438 * 24 23 16 26 26 C 1.47731 * 111.30571 * 79.01729 * 7 6 5 27 27 H 1.08997 * 109.46610 * 298.63762 * 1 2 3 28 28 H 1.09004 * 109.46830 * 58.63433 * 1 2 3 29 29 H 1.08998 * 109.47002 * 178.63400 * 1 2 3 30 30 H 1.08995 * 109.46985 * 181.36077 * 3 2 1 31 31 H 1.09000 * 109.47050 * 301.36433 * 3 2 1 32 32 H 1.09003 * 109.46966 * 61.36568 * 3 2 1 33 33 H 1.09001 * 109.97558 * 316.23745 * 4 2 1 34 34 H 1.08996 * 109.97589 * 77.47573 * 4 2 1 35 35 H 1.09002 * 109.49718 * 177.15169 * 5 4 2 36 36 H 1.08996 * 109.49702 * 297.22205 * 5 4 2 37 37 H 1.08994 * 108.99941 * 162.85667 * 6 5 4 38 38 H 1.09001 * 108.99841 * 44.09716 * 6 5 4 39 39 H 0.97000 * 119.99848 * 290.79206 * 8 7 6 40 40 H 1.09002 * 109.47374 * 300.00093 * 11 9 8 41 41 H 1.08997 * 109.47563 * 60.00194 * 11 9 8 42 42 H 1.08002 * 120.02720 * 0.02562 * 14 13 12 43 43 H 1.08000 * 119.96047 * 180.27376 * 15 14 13 44 44 H 1.09000 * 109.47072 * 240.01899 * 17 16 15 45 45 H 0.96704 * 113.99889 * 300.00263 * 18 17 16 46 46 H 1.07999 * 119.98224 * 179.97438 * 23 16 15 47 47 H 1.09006 * 109.94180 * 59.06418 * 26 7 6 48 48 H 1.08994 * 109.94603 * 180.31887 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5022 1.7499 0.0000 4 6 2.5045 -0.9171 -1.5047 5 6 3.9816 -1.2501 -1.2281 6 6 4.0831 -2.0637 0.0593 7 7 3.9263 -1.2252 1.2485 8 7 4.5043 -1.8098 2.3394 9 6 5.6127 -1.2706 2.8848 10 8 6.0475 -0.2205 2.4617 11 6 6.3116 -1.9727 4.0204 12 8 7.4508 -1.2097 4.4231 13 6 8.1975 -1.7074 5.4439 14 6 7.8378 -2.9022 6.0491 15 6 8.6017 -3.4092 7.0831 16 6 9.7175 -2.7212 7.5218 17 6 10.5453 -3.2740 8.6534 18 8 11.8813 -3.5004 8.1999 19 14 9.8063 -4.8821 9.2355 20 1 9.7902 -5.8543 8.1130 21 1 10.6223 -5.4270 10.3501 22 1 8.4178 -4.6469 9.7067 23 6 10.0754 -1.5265 6.9245 24 6 9.3182 -1.0178 5.8863 25 35 9.8074 0.6163 5.0702 26 6 2.5043 -0.9169 1.5042 27 1 -0.3632 0.4925 0.9020 28 1 -0.3633 0.5349 -0.8775 29 1 -0.3633 -1.0274 -0.0245 30 1 3.5918 1.7387 -0.0244 31 1 2.1244 2.2747 -0.8775 32 1 2.1642 2.2602 0.9020 33 1 1.9367 -1.8360 -1.6508 34 1 2.4231 -0.2849 -2.3888 35 1 4.3853 -1.8304 -2.0578 36 1 4.5490 -0.3257 -1.1204 37 1 5.0572 -2.5514 0.0950 38 1 3.3055 -2.8275 0.0586 39 1 4.1148 -2.6106 2.7240 40 1 5.6263 -2.0735 4.8620 41 1 6.6333 -2.9614 3.6933 42 1 6.9640 -3.4385 5.7095 43 1 8.3243 -4.3419 7.5516 44 1 10.5573 -2.5603 9.4771 45 1 11.9467 -4.1267 7.4660 46 1 10.9474 -0.9906 7.2693 47 1 1.9429 -1.8408 1.6439 48 1 2.4135 -0.2880 2.3897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_6201210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:33:58 Heat of formation + Delta-G solvation = -70.972286 kcal Electronic energy + Delta-G solvation = -28906.841106 eV Core-core repulsion = 24747.438258 eV Total energy + Delta-G solvation = -4159.402848 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 416.073 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.70930 -40.84705 -39.41090 -38.27590 -37.23265 -34.98879 -33.61026 -32.27436 -31.83962 -30.39075 -29.50004 -29.29306 -28.44334 -27.65468 -26.43391 -24.94275 -23.86859 -22.47902 -21.95794 -21.67548 -19.68053 -18.96836 -18.31376 -17.93853 -17.61149 -17.17718 -16.63843 -16.53148 -16.20184 -15.86152 -15.53468 -15.31901 -15.16509 -14.91684 -14.81741 -14.57224 -14.47983 -14.14306 -13.90300 -13.88927 -13.81197 -13.72275 -13.63742 -13.30778 -13.18898 -13.04633 -12.42051 -12.36640 -12.27962 -12.16082 -12.13992 -12.07725 -11.79572 -11.75523 -11.32424 -11.02509 -10.92170 -10.72143 -10.50850 -10.46940 -10.29216 -9.96065 -9.74456 -9.31933 -0.09315 0.07495 0.73328 1.02578 1.07990 1.33503 1.40542 1.52395 1.63031 1.74335 1.82334 1.82958 2.30399 2.34581 2.49051 3.22095 3.35675 3.40379 3.53647 3.59435 3.67116 3.78710 3.79664 3.89930 4.01871 4.06303 4.27153 4.30549 4.43877 4.49396 4.55331 4.56571 4.60186 4.61752 4.65091 4.73744 4.77397 4.83697 4.89881 4.90665 4.97796 5.16007 5.20265 5.32721 5.38169 5.40719 5.66268 5.68933 5.95648 6.17598 6.32779 6.47934 7.44084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.034 2.966 3 C -0.444 4.444 4 C -0.410 4.410 5 C -0.101 4.101 6 C 0.025 3.975 7 N -0.273 5.273 8 N -0.585 5.585 9 C 0.529 3.471 10 O -0.479 6.479 11 C 0.041 3.959 12 O -0.272 6.272 13 C 0.161 3.839 14 C -0.200 4.200 15 C -0.069 4.069 16 C -0.153 4.153 17 C -0.076 4.076 18 O -0.537 6.537 19 Si 0.948 3.052 20 H -0.251 1.251 21 H -0.251 1.251 22 H -0.250 1.250 23 C -0.021 4.021 24 C -0.123 4.123 25 Br -0.023 7.023 26 C -0.259 4.259 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.379 0.621 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.140 0.860 43 H 0.130 0.870 44 H 0.121 0.879 45 H 0.377 0.623 46 H 0.147 0.853 47 H 0.055 0.945 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 -6.153 0.235 7.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.227 2.773 3 C -0.553 4.553 4 C -0.497 4.497 5 C -0.140 4.140 6 C -0.102 4.102 7 N -0.090 5.090 8 N -0.332 5.332 9 C 0.312 3.688 10 O -0.349 6.349 11 C -0.039 4.039 12 O -0.184 6.184 13 C 0.113 3.887 14 C -0.220 4.220 15 C -0.087 4.087 16 C -0.154 4.154 17 C -0.187 4.187 18 O -0.342 6.342 19 Si 0.771 3.229 20 H -0.174 1.174 21 H -0.175 1.175 22 H -0.174 1.174 23 C -0.041 4.041 24 C -0.203 4.203 25 Br 0.062 6.938 26 C -0.432 4.432 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.217 0.783 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.157 0.843 43 H 0.147 0.853 44 H 0.138 0.862 45 H 0.224 0.776 46 H 0.164 0.836 47 H 0.073 0.927 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.265 -4.521 0.221 6.220 hybrid contribution -1.006 -1.860 0.031 2.115 sum -5.272 -6.381 0.251 8.281 Atomic orbital electron populations 1.26121 1.20300 1.04564 1.04873 0.79185 0.65818 0.67673 0.64670 1.26038 1.07356 1.17707 1.04179 1.26385 1.00710 1.08094 1.14480 1.21188 0.96609 1.01209 0.94959 1.22610 1.02149 0.95211 0.90275 1.62971 1.14087 1.38125 0.93780 1.45358 1.28712 1.29853 1.29267 1.19743 0.80087 0.85752 0.83184 1.90791 1.63269 1.20632 1.60162 1.22473 0.88327 0.95500 0.97616 1.86283 1.37543 1.46973 1.47552 1.18630 0.90407 0.91926 0.87754 1.21141 1.03400 0.96779 1.00655 1.20953 0.93745 0.98847 0.95174 1.20246 0.97987 0.96616 1.00578 1.24936 0.86342 1.10000 0.97379 1.86533 1.24331 1.67777 1.55575 0.85711 0.79843 0.76211 0.81144 1.17444 1.17504 1.17389 1.20883 0.97505 0.94069 0.91641 1.21178 0.98968 0.97395 1.02738 1.96819 1.91636 1.24696 1.80617 1.28071 0.90410 1.07082 1.17673 0.91042 0.90652 0.91219 0.90310 0.91315 0.91335 0.90703 0.90025 0.90805 0.90161 0.90232 0.93690 0.78315 0.88558 0.88504 0.84256 0.85283 0.86157 0.77569 0.83554 0.92674 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.06 8.65 101.05 0.87 1.93 16 2 Si 1.03 -2.69 11.99 -169.99 -2.04 -4.73 16 3 C -0.44 0.12 8.65 101.05 0.87 0.99 16 4 C -0.41 0.85 5.04 37.64 0.19 1.04 16 5 C -0.10 0.09 5.74 -26.44 -0.15 -0.06 16 6 C 0.03 -0.02 5.38 -4.31 -0.02 -0.05 16 7 N -0.27 -0.08 4.15 -56.96 -0.24 -0.32 16 8 N -0.59 0.38 4.71 31.22 0.15 0.53 16 9 C 0.53 0.97 8.01 -10.99 -0.09 0.88 16 10 O -0.48 -3.41 16.83 -14.35 -0.24 -3.65 16 11 C 0.04 -0.05 5.22 36.00 0.19 0.14 16 12 O -0.27 -0.72 9.01 -39.40 -0.35 -1.08 16 13 C 0.16 0.27 6.68 -39.20 -0.26 0.01 16 14 C -0.20 0.19 9.04 -39.43 -0.36 -0.17 16 15 C -0.07 0.07 8.66 -39.60 -0.34 -0.27 16 16 C -0.15 0.06 5.39 -104.60 -0.56 -0.51 16 17 C -0.08 0.10 2.82 36.01 0.10 0.21 16 18 O -0.54 0.26 12.77 -35.23 -0.45 -0.19 16 19 Si 0.95 -1.68 25.07 -169.99 -4.26 -5.94 16 20 H -0.25 0.45 7.11 56.52 0.40 0.85 16 21 H -0.25 0.01 7.11 56.52 0.40 0.41 16 22 H -0.25 0.36 7.11 56.52 0.40 0.76 16 23 C -0.02 -0.02 9.35 -39.58 -0.37 -0.39 16 24 C -0.12 -0.30 6.24 -39.38 -0.25 -0.55 16 25 Br -0.02 -0.09 33.16 -68.01 -2.26 -2.34 16 26 C -0.26 0.39 4.85 60.52 0.29 0.68 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 30 H 0.08 0.11 7.96 -51.93 -0.41 -0.31 16 31 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 32 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 33 H 0.07 -0.19 7.99 -51.93 -0.42 -0.61 16 34 H 0.08 -0.17 7.99 -51.93 -0.42 -0.59 16 35 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 36 H 0.08 0.03 7.96 -51.93 -0.41 -0.39 16 37 H 0.08 -0.04 8.03 -51.93 -0.42 -0.46 16 38 H 0.04 -0.10 7.78 -51.93 -0.40 -0.50 16 39 H 0.38 -1.51 8.83 -185.15 -1.63 -3.14 16 40 H 0.10 -0.39 7.65 -51.93 -0.40 -0.79 16 41 H 0.10 -0.39 7.67 -51.93 -0.40 -0.79 16 42 H 0.14 -0.55 6.30 -52.49 -0.33 -0.88 16 43 H 0.13 -0.36 4.87 -52.49 -0.26 -0.62 16 44 H 0.12 -0.25 7.96 -51.93 -0.41 -0.67 16 45 H 0.38 -1.37 8.70 45.56 0.40 -0.97 16 46 H 0.15 0.05 8.06 -52.49 -0.42 -0.37 16 47 H 0.05 -0.16 7.92 -51.93 -0.41 -0.57 16 48 H 0.09 -0.08 7.99 -51.93 -0.41 -0.49 16 LS Contribution 410.34 15.07 6.18 6.18 Total: 0.00 -9.50 410.34 -11.43 -20.94 By element: Atomic # 1 Polarization: -5.24 SS G_CDS: -8.05 Total: -13.28 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 0.12 Total: 3.88 kcal Atomic # 7 Polarization: 0.30 SS G_CDS: -0.09 Total: 0.21 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -1.05 Total: -4.92 kcal Atomic # 14 Polarization: -4.37 SS G_CDS: -6.30 Total: -10.67 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.26 Total: -2.34 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -9.50 -11.43 -20.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_6201210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.035 kcal (2) G-P(sol) polarization free energy of solvation -9.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds