Wall clock time and date at job start Sun Mar 7 2021 09:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 110.06356 * 2 1 4 4 C 1.87528 * 110.00262 * 238.63767 * 2 1 3 5 5 C 1.53926 * 106.84964 * 196.90363 * 4 2 1 6 6 C 1.52625 * 109.31315 * 57.20569 * 5 4 2 7 7 N 1.46361 * 111.88927 * 283.47733 * 6 5 4 8 8 N 1.36601 * 110.99934 * 203.19515 * 7 6 5 9 9 C 1.34780 * 119.99800 * 111.06887 * 8 7 6 10 10 O 1.21277 * 120.00006 * 4.73953 * 9 8 7 11 11 C 1.50693 * 119.99760 * 184.73330 * 9 8 7 12 12 O 1.42901 * 109.47147 * 180.02562 * 11 9 8 13 13 C 1.35920 * 117.00504 * 180.02562 * 12 11 9 14 14 C 1.38678 * 120.05161 * 359.72015 * 13 12 11 15 15 C 1.38196 * 119.94754 * 179.72417 * 14 13 12 16 16 C 1.38233 * 120.07120 * 0.53274 * 15 14 13 17 17 C 1.50706 * 119.93893 * 179.74590 * 16 15 14 18 18 O 1.42892 * 109.47271 * 120.02111 * 17 16 15 19 19 Si 1.86302 * 109.47252 * 0.02562 * 17 16 15 20 20 H 1.48508 * 109.46583 * 60.00113 * 19 17 16 21 21 H 1.48498 * 109.47161 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47183 * 300.00305 * 19 17 16 23 23 C 1.38282 * 120.12236 * 359.76290 * 16 15 14 24 24 C 1.38200 * 120.04358 * 359.96074 * 23 16 15 25 25 Br 1.89093 * 120.03676 * 179.97438 * 24 23 16 26 26 C 1.47731 * 111.30571 * 79.01729 * 7 6 5 27 27 H 1.08997 * 109.46610 * 298.63762 * 1 2 3 28 28 H 1.09004 * 109.46830 * 58.63433 * 1 2 3 29 29 H 1.08998 * 109.47002 * 178.63400 * 1 2 3 30 30 H 1.08995 * 109.46985 * 181.36077 * 3 2 1 31 31 H 1.09000 * 109.47050 * 301.36433 * 3 2 1 32 32 H 1.09003 * 109.46966 * 61.36568 * 3 2 1 33 33 H 1.09001 * 109.97558 * 316.23745 * 4 2 1 34 34 H 1.08996 * 109.97589 * 77.47573 * 4 2 1 35 35 H 1.09002 * 109.49718 * 177.15169 * 5 4 2 36 36 H 1.08996 * 109.49702 * 297.22205 * 5 4 2 37 37 H 1.08994 * 108.99941 * 162.85667 * 6 5 4 38 38 H 1.09001 * 108.99841 * 44.09716 * 6 5 4 39 39 H 0.97000 * 119.99848 * 290.79206 * 8 7 6 40 40 H 1.09002 * 109.47374 * 300.00093 * 11 9 8 41 41 H 1.08997 * 109.47563 * 60.00194 * 11 9 8 42 42 H 1.08002 * 120.02720 * 0.02562 * 14 13 12 43 43 H 1.08000 * 119.96047 * 180.27376 * 15 14 13 44 44 H 1.09000 * 109.47072 * 240.01899 * 17 16 15 45 45 H 0.96704 * 113.99889 * 300.00263 * 18 17 16 46 46 H 1.07999 * 119.98224 * 179.97438 * 23 16 15 47 47 H 1.09006 * 109.94180 * 59.06418 * 26 7 6 48 48 H 1.08994 * 109.94603 * 180.31887 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5022 1.7499 0.0000 4 6 2.5045 -0.9171 -1.5047 5 6 3.9816 -1.2501 -1.2281 6 6 4.0831 -2.0637 0.0593 7 7 3.9263 -1.2252 1.2485 8 7 4.5043 -1.8098 2.3394 9 6 5.6127 -1.2706 2.8848 10 8 6.0475 -0.2205 2.4617 11 6 6.3116 -1.9727 4.0204 12 8 7.4508 -1.2097 4.4231 13 6 8.1975 -1.7074 5.4439 14 6 7.8378 -2.9022 6.0491 15 6 8.6017 -3.4092 7.0831 16 6 9.7175 -2.7212 7.5218 17 6 10.5453 -3.2740 8.6534 18 8 11.8813 -3.5004 8.1999 19 14 9.8063 -4.8821 9.2355 20 1 9.7902 -5.8543 8.1130 21 1 10.6223 -5.4270 10.3501 22 1 8.4178 -4.6469 9.7067 23 6 10.0754 -1.5265 6.9245 24 6 9.3182 -1.0178 5.8863 25 35 9.8074 0.6163 5.0702 26 6 2.5043 -0.9169 1.5042 27 1 -0.3632 0.4925 0.9020 28 1 -0.3633 0.5349 -0.8775 29 1 -0.3633 -1.0274 -0.0245 30 1 3.5918 1.7387 -0.0244 31 1 2.1244 2.2747 -0.8775 32 1 2.1642 2.2602 0.9020 33 1 1.9367 -1.8360 -1.6508 34 1 2.4231 -0.2849 -2.3888 35 1 4.3853 -1.8304 -2.0578 36 1 4.5490 -0.3257 -1.1204 37 1 5.0572 -2.5514 0.0950 38 1 3.3055 -2.8275 0.0586 39 1 4.1148 -2.6106 2.7240 40 1 5.6263 -2.0735 4.8620 41 1 6.6333 -2.9614 3.6933 42 1 6.9640 -3.4385 5.7095 43 1 8.3243 -4.3419 7.5516 44 1 10.5573 -2.5603 9.4771 45 1 11.9467 -4.1267 7.4660 46 1 10.9474 -0.9906 7.2693 47 1 1.9429 -1.8408 1.6439 48 1 2.4135 -0.2880 2.3897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_6201210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:33:57 Heat of formation + Delta-G solvation = -67.727350 kcal Electronic energy + Delta-G solvation = -28906.700395 eV Core-core repulsion = 24747.438258 eV Total energy + Delta-G solvation = -4159.262137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 416.073 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.70594 -40.86353 -39.36961 -38.33325 -37.18440 -34.96692 -33.64167 -32.25579 -31.78895 -30.46116 -29.38471 -29.19785 -28.35575 -27.52242 -26.35856 -24.85614 -23.82736 -22.44238 -21.86760 -21.70785 -19.63582 -18.93626 -18.23413 -17.94067 -17.55957 -17.15714 -16.57393 -16.47945 -16.10077 -15.79902 -15.51458 -15.32433 -15.06905 -14.86889 -14.74315 -14.58139 -14.38134 -13.97389 -13.86506 -13.81751 -13.80449 -13.68984 -13.50059 -13.19665 -13.11957 -12.96660 -12.38094 -12.22743 -12.20383 -12.04404 -12.02884 -11.97179 -11.88845 -11.67190 -11.31627 -11.21394 -10.82195 -10.76026 -10.41590 -10.39602 -10.22517 -9.97888 -9.63320 -9.32995 -0.08276 0.10848 0.63446 1.11790 1.21686 1.50269 1.50644 1.54789 1.75765 1.89339 1.96893 2.00273 2.37974 2.40000 2.62225 3.28837 3.49232 3.54580 3.66870 3.73664 3.80098 3.97769 4.01564 4.05571 4.09014 4.17321 4.33685 4.43326 4.54002 4.61522 4.64841 4.68390 4.74165 4.79393 4.81155 4.83665 4.84575 4.86067 4.92382 4.96617 5.09395 5.20682 5.30330 5.46674 5.47422 5.58779 5.65627 5.81142 6.02097 6.19715 6.40711 6.73260 7.48533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.095 2.905 3 C -0.469 4.469 4 C -0.415 4.415 5 C -0.105 4.105 6 C 0.027 3.973 7 N -0.304 5.304 8 N -0.571 5.571 9 C 0.525 3.475 10 O -0.547 6.547 11 C 0.039 3.961 12 O -0.304 6.304 13 C 0.148 3.852 14 C -0.190 4.190 15 C -0.068 4.068 16 C -0.151 4.151 17 C -0.080 4.080 18 O -0.555 6.555 19 Si 0.985 3.015 20 H -0.243 1.243 21 H -0.280 1.280 22 H -0.248 1.248 23 C -0.030 4.030 24 C -0.143 4.143 25 Br -0.053 7.053 26 C -0.267 4.267 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.399 0.601 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.176 0.824 43 H 0.153 0.847 44 H 0.123 0.877 45 H 0.389 0.611 46 H 0.143 0.857 47 H 0.077 0.923 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.910 -9.185 0.721 11.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.284 2.716 3 C -0.574 4.574 4 C -0.500 4.500 5 C -0.144 4.144 6 C -0.100 4.100 7 N -0.121 5.121 8 N -0.318 5.318 9 C 0.311 3.689 10 O -0.421 6.421 11 C -0.040 4.040 12 O -0.216 6.216 13 C 0.100 3.900 14 C -0.209 4.209 15 C -0.086 4.086 16 C -0.153 4.153 17 C -0.190 4.190 18 O -0.362 6.362 19 Si 0.808 3.192 20 H -0.166 1.166 21 H -0.206 1.206 22 H -0.172 1.172 23 C -0.050 4.050 24 C -0.223 4.223 25 Br 0.032 6.968 26 C -0.439 4.439 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.241 0.759 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.194 0.806 43 H 0.170 0.830 44 H 0.141 0.859 45 H 0.239 0.761 46 H 0.160 0.840 47 H 0.095 0.905 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.308 -7.570 0.697 9.878 hybrid contribution -0.363 -0.929 -0.097 1.002 sum -6.671 -8.499 0.601 10.821 Atomic orbital electron populations 1.26142 1.19910 1.05228 1.04918 0.78250 0.65178 0.64533 0.63687 1.26400 1.05934 1.21122 1.03963 1.26452 0.99880 1.08903 1.14812 1.21208 0.97352 1.00393 0.95432 1.22585 1.02488 0.95326 0.89629 1.62909 1.15220 1.39481 0.94461 1.45212 1.27914 1.30005 1.28679 1.20427 0.80133 0.85029 0.83345 1.90766 1.65227 1.23626 1.62491 1.22749 0.87924 0.95754 0.97571 1.86244 1.38789 1.48543 1.48056 1.18786 0.90272 0.92842 0.88054 1.21512 1.04119 0.95550 0.99748 1.21257 0.93056 0.99374 0.94866 1.20396 0.98375 0.95994 1.00509 1.25106 0.85972 1.10845 0.97086 1.86503 1.24947 1.68433 1.56303 0.85198 0.78923 0.75072 0.79992 1.16640 1.20554 1.17202 1.20903 0.97540 0.94837 0.91731 1.21313 1.00359 0.96880 1.03768 1.96769 1.91902 1.26836 1.81247 1.28195 0.89703 1.08159 1.17844 0.91075 0.90608 0.90202 0.92683 0.91096 0.91980 0.89243 0.89995 0.90383 0.92311 0.90967 0.91589 0.75934 0.85145 0.85062 0.80632 0.82995 0.85941 0.76142 0.83954 0.90515 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.70 8.65 113.37 0.98 3.68 16 2 Si 1.09 -5.80 11.99 68.60 0.82 -4.97 16 3 C -0.47 -0.74 8.65 113.37 0.98 0.24 16 4 C -0.41 1.93 5.04 72.29 0.36 2.29 16 5 C -0.11 0.13 5.74 30.78 0.18 0.31 16 6 C 0.03 -0.06 5.38 86.28 0.46 0.41 16 7 N -0.30 -0.24 4.15 -334.13 -1.39 -1.62 16 8 N -0.57 1.06 4.71 -173.54 -0.82 0.24 16 9 C 0.52 2.16 8.01 87.65 0.70 2.86 16 10 O -0.55 -9.18 16.83 16.02 0.27 -8.91 16 11 C 0.04 -0.15 5.22 71.23 0.37 0.23 16 12 O -0.30 -1.74 9.01 -73.61 -0.66 -2.40 16 13 C 0.15 0.46 6.68 22.52 0.15 0.61 16 14 C -0.19 0.79 9.04 22.36 0.20 1.00 16 15 C -0.07 0.29 8.66 22.26 0.19 0.49 16 16 C -0.15 0.21 5.39 -19.85 -0.11 0.11 16 17 C -0.08 0.26 2.82 71.24 0.20 0.46 16 18 O -0.55 0.56 12.77 -148.98 -1.90 -1.35 16 19 Si 0.99 -4.90 25.07 68.60 1.72 -3.18 16 20 H -0.24 1.50 7.11 99.48 0.71 2.20 16 21 H -0.28 0.04 7.11 99.48 0.71 0.75 16 22 H -0.25 1.29 7.11 99.48 0.71 1.99 16 23 C -0.03 -0.08 9.35 22.27 0.21 0.13 16 24 C -0.14 -0.87 6.24 22.40 0.14 -0.73 16 25 Br -0.05 -0.53 33.16 -20.37 -0.68 -1.21 16 26 C -0.27 0.96 4.85 127.53 0.62 1.58 16 27 H 0.07 -0.39 7.96 -2.39 -0.02 -0.40 16 28 H 0.07 -0.42 7.96 -2.38 -0.02 -0.44 16 29 H 0.08 -0.59 7.96 -2.39 -0.02 -0.61 16 30 H 0.05 0.34 7.96 -2.39 -0.02 0.32 16 31 H 0.07 0.02 7.96 -2.39 -0.02 0.01 16 32 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 33 H 0.09 -0.64 7.99 -2.39 -0.02 -0.66 16 34 H 0.08 -0.36 7.99 -2.39 -0.02 -0.38 16 35 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.06 0.17 7.96 -2.39 -0.02 0.16 16 37 H 0.07 -0.06 8.03 -2.39 -0.02 -0.08 16 38 H 0.07 -0.43 7.78 -2.39 -0.02 -0.45 16 39 H 0.40 -3.99 8.83 -215.50 -1.90 -5.89 16 40 H 0.13 -1.42 7.65 -2.39 -0.02 -1.44 16 41 H 0.13 -1.44 7.67 -2.39 -0.02 -1.46 16 42 H 0.18 -2.15 6.30 -2.91 -0.02 -2.17 16 43 H 0.15 -1.37 4.87 -2.91 -0.01 -1.39 16 44 H 0.12 -0.51 7.96 -2.39 -0.02 -0.53 16 45 H 0.39 -2.94 8.70 -74.05 -0.64 -3.58 16 46 H 0.14 0.36 8.06 -2.91 -0.02 0.33 16 47 H 0.08 -0.62 7.92 -2.38 -0.02 -0.63 16 48 H 0.08 -0.14 7.99 -2.39 -0.02 -0.16 16 Total: 0.00 -26.56 410.34 2.21 -24.35 By element: Atomic # 1 Polarization: -13.79 SS G_CDS: -0.80 Total: -14.59 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 5.65 Total: 13.65 kcal Atomic # 7 Polarization: 0.82 SS G_CDS: -2.20 Total: -1.38 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -2.30 Total: -12.66 kcal Atomic # 14 Polarization: -10.70 SS G_CDS: 2.54 Total: -8.16 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -0.68 Total: -1.21 kcal Total: -26.56 2.21 -24.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_6201210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.380 kcal (2) G-P(sol) polarization free energy of solvation -26.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds