Wall clock time and date at job start Sun Mar 7 2021 09:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46895 * 111.00229 * 2 1 4 4 C 1.50706 * 109.46965 * 293.95132 * 3 2 1 5 5 O 1.21278 * 119.99999 * 0.02562 * 4 3 2 6 6 N 1.34784 * 119.99824 * 179.97438 * 4 3 2 7 7 N 1.36597 * 119.99689 * 174.99098 * 6 4 3 8 8 C 1.46363 * 110.99560 * 111.10466 * 7 6 4 9 9 C 1.52628 * 111.88855 * 203.19472 * 8 7 6 10 10 C 1.53923 * 109.31167 * 283.47911 * 9 8 7 11 11 Si 1.87521 * 106.85200 * 57.20551 * 10 9 8 12 12 C 1.86302 * 110.00481 * 196.90331 * 11 10 9 13 13 C 1.86306 * 110.00191 * 75.49952 * 11 10 9 14 14 C 1.47715 * 111.00155 * 235.45267 * 7 6 4 15 15 C 1.39680 * 111.00066 * 123.95037 * 2 1 3 16 16 C 1.38889 * 120.07410 * 296.06973 * 15 2 1 17 17 C 1.38124 * 119.92054 * 179.97438 * 16 15 2 18 18 C 1.38263 * 120.07779 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.92445 * 180.02562 * 18 17 16 20 20 F 1.39898 * 109.47264 * 359.97438 * 19 18 17 21 21 F 1.39897 * 109.47339 * 119.99266 * 19 18 17 22 22 F 1.39906 * 109.46596 * 239.99585 * 19 18 17 23 23 C 1.38304 * 120.15075 * 359.77940 * 18 17 16 24 24 C 1.38087 * 120.07272 * 0.47043 * 23 18 17 25 25 C 1.50697 * 120.03825 * 179.79307 * 24 23 18 26 26 O 1.42906 * 109.46894 * 254.72636 * 25 24 23 27 27 Si 1.86304 * 109.47088 * 14.72010 * 25 24 23 28 28 H 1.48497 * 109.47090 * 59.99970 * 27 25 24 29 29 H 1.48504 * 109.46942 * 300.00111 * 27 25 24 30 30 H 1.48503 * 109.47177 * 180.02562 * 27 25 24 31 31 H 1.09004 * 109.47237 * 296.04877 * 1 2 3 32 32 H 1.09000 * 109.46946 * 56.04931 * 1 2 3 33 33 H 1.09000 * 109.47276 * 176.04278 * 1 2 3 34 34 H 1.08994 * 109.47303 * 53.94930 * 3 2 1 35 35 H 1.09007 * 109.47380 * 173.95534 * 3 2 1 36 36 H 0.96993 * 119.99842 * 354.99683 * 6 4 3 37 37 H 1.09000 * 108.99619 * 323.81507 * 8 7 6 38 38 H 1.08998 * 108.99498 * 82.57723 * 8 7 6 39 39 H 1.08999 * 109.49472 * 163.52598 * 9 8 7 40 40 H 1.09005 * 109.52398 * 43.44607 * 9 8 7 41 41 H 1.08999 * 109.98140 * 297.86941 * 10 9 8 42 42 H 1.09000 * 110.05258 * 176.58286 * 10 9 8 43 43 H 1.09003 * 109.47155 * 177.27360 * 12 11 10 44 44 H 1.09004 * 109.46838 * 297.26960 * 12 11 10 45 45 H 1.08996 * 109.47060 * 57.26689 * 12 11 10 46 46 H 1.08997 * 109.47075 * 302.72922 * 13 11 10 47 47 H 1.08994 * 109.46549 * 62.73331 * 13 11 10 48 48 H 1.08999 * 109.46549 * 182.72766 * 13 11 10 49 49 H 1.09000 * 109.94796 * 294.88759 * 14 7 6 50 50 H 1.08999 * 109.94990 * 56.14800 * 14 7 6 51 51 H 1.07995 * 120.03856 * 0.02562 * 16 15 2 52 52 H 1.08004 * 119.96212 * 179.97438 * 17 16 15 53 53 H 1.08003 * 119.96631 * 180.25786 * 23 18 17 54 54 H 1.08998 * 109.47561 * 134.72016 * 25 24 23 55 55 H 0.96703 * 113.99097 * 299.99128 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 -1.2985 5 8 1.0047 1.4455 -2.1408 6 7 2.0181 3.3202 -1.5234 7 7 1.7833 3.8989 -2.7382 8 6 0.7702 4.9498 -2.6314 9 6 0.0824 5.2151 -3.9679 10 6 1.0208 6.0380 -4.8688 11 14 2.6098 5.0568 -5.0388 12 6 3.9755 6.1588 -5.6643 13 6 2.3549 3.6287 -6.2078 14 6 3.0343 4.4174 -3.3283 15 6 1.9695 -0.7283 1.0817 16 6 1.7258 -0.3013 2.3807 17 6 2.2219 -1.0241 3.4480 18 6 2.9598 -2.1718 3.2245 19 6 3.4989 -2.9582 4.3916 20 9 3.1256 -2.3341 5.5867 21 9 2.9776 -4.2560 4.3602 22 9 4.8946 -3.0141 4.3113 23 6 3.2000 -2.6026 1.9324 24 6 2.7114 -1.8819 0.8606 25 6 2.9776 -2.3495 -0.5470 26 8 3.9739 -1.5176 -1.1449 27 14 3.5796 -4.1122 -0.5125 28 1 2.5444 -4.9768 0.1088 29 1 4.8324 -4.1920 0.2808 30 1 3.8425 -4.5728 -1.8996 31 1 -0.3634 0.4513 0.9233 32 1 -0.3633 0.5739 -0.8525 33 1 -0.3634 -1.0252 -0.0709 34 1 1.5611 1.9273 0.8308 35 1 3.0798 1.3443 0.1082 36 1 2.4592 3.8253 -0.8226 37 1 0.0204 4.6468 -1.9006 38 1 1.2466 5.8684 -2.2891 39 1 -0.8395 5.7712 -3.7985 40 1 -0.1486 4.2668 -4.4533 41 1 1.2272 7.0039 -4.4078 42 1 0.5660 6.1830 -5.8487 43 1 4.9055 5.5924 -5.7138 44 1 3.7199 6.5254 -6.6585 45 1 4.1000 7.0033 -4.9866 46 1 1.5384 3.0040 -5.8456 47 1 2.1088 4.0099 -7.1988 48 1 3.2685 3.0368 -6.2628 49 1 3.4265 5.2286 -2.7149 50 1 3.7702 3.6167 -3.4027 51 1 1.1485 0.5944 2.5560 52 1 2.0332 -0.6925 4.4584 53 1 3.7733 -3.5018 1.7613 54 1 2.0581 -2.2910 -1.1294 55 1 3.7275 -0.5839 -1.1962 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_6406254.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:34:09 Heat of formation + Delta-G solvation = -168.730820 kcal Electronic energy + Delta-G solvation = -39842.864969 eV Core-core repulsion = 34397.322493 eV Total energy + Delta-G solvation = -5445.542476 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 419.176 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -51.26359 -48.78150 -48.73483 -41.78404 -40.76582 -38.79326 -37.59577 -37.35515 -34.86844 -33.03944 -32.30566 -31.71842 -29.33328 -29.05658 -28.32820 -27.64079 -27.46555 -26.97298 -25.33162 -24.44234 -23.33111 -22.12539 -21.74822 -21.42866 -19.58834 -19.56499 -19.53294 -18.55669 -18.45684 -18.16408 -17.40780 -17.01881 -16.68957 -16.39074 -16.25989 -15.78948 -15.70059 -15.64221 -15.50983 -15.24212 -15.16625 -15.09321 -14.90289 -14.88755 -14.78409 -14.69658 -14.55886 -14.41306 -14.27381 -13.99995 -13.93736 -13.77569 -13.64796 -13.46558 -13.27280 -13.17831 -13.11011 -13.01183 -12.87792 -12.78837 -12.57769 -12.28658 -11.99346 -11.94307 -11.93782 -11.40854 -11.22592 -11.05961 -10.78354 -10.63143 -10.34295 -10.22983 -10.13771 -10.09107 -9.66321 -9.54181 -0.38341 -0.00382 1.14108 1.42809 1.43355 1.45299 1.54407 1.72717 1.87117 1.90447 1.93497 2.11526 2.18132 2.56570 2.64080 2.69347 2.89258 3.29569 3.42893 3.49639 3.61146 3.73792 3.86740 4.01851 4.03677 4.05744 4.10075 4.18314 4.23950 4.31305 4.41076 4.47790 4.49171 4.53939 4.57019 4.62316 4.71643 4.78121 4.82680 4.84294 4.86838 4.87733 4.90336 4.96407 4.96656 5.06250 5.12038 5.14756 5.32816 5.37188 5.49449 5.58721 5.60521 5.68743 5.86185 6.09270 6.37863 6.53547 6.61420 7.64360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.503 5.503 3 C 0.042 3.958 4 C 0.528 3.472 5 O -0.538 6.538 6 N -0.581 5.581 7 N -0.297 5.297 8 C 0.028 3.972 9 C -0.103 4.103 10 C -0.417 4.417 11 Si 1.095 2.905 12 C -0.457 4.457 13 C -0.465 4.465 14 C -0.266 4.266 15 C 0.136 3.864 16 C -0.135 4.135 17 C -0.054 4.054 18 C -0.185 4.185 19 C 0.507 3.493 20 F -0.174 7.174 21 F -0.182 7.182 22 F -0.182 7.182 23 C -0.079 4.079 24 C -0.096 4.096 25 C -0.074 4.074 26 O -0.545 6.545 27 Si 1.010 2.990 28 H -0.239 1.239 29 H -0.260 1.260 30 H -0.269 1.269 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.393 0.607 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.062 0.938 49 H 0.070 0.930 50 H 0.086 0.914 51 H 0.163 0.837 52 H 0.159 0.841 53 H 0.134 0.866 54 H 0.089 0.911 55 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.026 8.269 1.625 8.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.225 5.225 3 C -0.088 4.088 4 C 0.315 3.685 5 O -0.412 6.412 6 N -0.327 5.327 7 N -0.114 5.114 8 C -0.099 4.099 9 C -0.142 4.142 10 C -0.502 4.502 11 Si 1.284 2.716 12 C -0.565 4.565 13 C -0.571 4.571 14 C -0.438 4.438 15 C 0.042 3.958 16 C -0.155 4.155 17 C -0.073 4.073 18 C -0.187 4.187 19 C 0.453 3.547 20 F -0.156 7.156 21 F -0.163 7.163 22 F -0.163 7.163 23 C -0.098 4.098 24 C -0.097 4.097 25 C -0.183 4.183 26 O -0.352 6.352 27 Si 0.832 3.168 28 H -0.162 1.162 29 H -0.184 1.184 30 H -0.194 1.194 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.105 0.895 51 H 0.181 0.819 52 H 0.177 0.823 53 H 0.151 0.849 54 H 0.107 0.893 55 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.905 5.776 0.313 5.855 hybrid contribution -0.081 1.808 1.712 2.491 sum -0.986 7.584 2.025 7.912 Atomic orbital electron populations 1.22593 0.83877 1.03433 1.02173 1.59121 1.10161 1.13011 1.40204 1.22136 1.03646 0.88061 0.94996 1.20656 0.78682 0.80420 0.88789 1.90698 1.38829 1.64196 1.47482 1.45517 1.62467 1.13215 1.11455 1.62967 1.08741 1.31779 1.07863 1.22550 0.94790 0.93279 0.99326 1.21184 0.98576 1.00200 0.94209 1.26471 1.14488 1.06613 1.02671 0.78230 0.65779 0.64660 0.62960 1.26192 1.13231 1.10301 1.06814 1.26343 1.04257 1.15089 1.11368 1.28164 0.94006 1.04321 1.17356 1.18793 0.94499 0.93183 0.89351 1.21912 1.00648 1.01586 0.91364 1.21159 0.93008 0.91469 1.01618 1.19950 1.06726 0.99923 0.92065 1.18403 0.75575 0.77829 0.82908 1.93176 1.91169 1.82171 1.49058 1.93222 1.86542 1.39910 1.96631 1.93228 1.30363 1.96361 1.96369 1.20856 0.97865 0.99859 0.91190 1.20155 0.98204 0.95572 0.95788 1.25101 0.96996 1.06104 0.90131 1.86663 1.42955 1.23140 1.82408 0.84551 0.80081 0.72104 0.80101 1.16222 1.18428 1.19370 0.93225 0.90148 0.91226 0.88094 0.85588 0.76707 0.91104 0.92361 0.90702 0.91962 0.89650 0.90069 0.91088 0.90715 0.90480 0.92321 0.91238 0.91872 0.91157 0.89545 0.81919 0.82310 0.84863 0.89315 0.77730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 9.02 127.69 1.15 1.10 16 2 N -0.50 1.37 3.19 -724.44 -2.31 -0.94 16 3 C 0.04 -0.29 4.91 85.56 0.42 0.13 16 4 C 0.53 -0.29 7.62 87.66 0.67 0.38 16 5 O -0.54 -4.83 14.66 -3.02 -0.04 -4.88 16 6 N -0.58 2.20 4.71 -173.52 -0.82 1.38 16 7 N -0.30 0.33 4.15 -334.14 -1.39 -1.06 16 8 C 0.03 -0.08 5.38 86.28 0.46 0.38 16 9 C -0.10 0.23 5.74 30.78 0.18 0.41 16 10 C -0.42 2.10 5.04 72.29 0.36 2.46 16 11 Si 1.10 -6.56 11.99 68.60 0.82 -5.74 16 12 C -0.46 2.67 8.65 113.37 0.98 3.65 16 13 C -0.47 -0.01 8.65 113.37 0.98 0.98 16 14 C -0.27 1.19 4.85 127.53 0.62 1.81 16 15 C 0.14 -0.35 4.62 38.21 0.18 -0.17 16 16 C -0.14 0.81 8.66 22.40 0.19 1.00 16 17 C -0.05 0.20 9.42 22.25 0.21 0.41 16 18 C -0.19 -0.17 5.37 -19.84 -0.11 -0.27 16 19 C 0.51 1.65 3.31 71.24 0.24 1.89 16 20 F -0.17 -0.45 15.96 44.97 0.72 0.27 16 21 F -0.18 -0.97 17.23 44.97 0.77 -0.19 16 22 F -0.18 -1.00 17.24 44.97 0.78 -0.23 16 23 C -0.08 -0.17 8.20 22.25 0.18 0.01 16 24 C -0.10 -0.10 5.28 -19.73 -0.10 -0.20 16 25 C -0.07 -0.20 2.30 71.24 0.16 -0.04 16 26 O -0.55 -2.51 12.65 -148.98 -1.89 -4.40 16 27 Si 1.01 3.53 25.74 68.60 1.77 5.29 16 28 H -0.24 -0.53 7.11 99.48 0.71 0.18 16 29 H -0.26 -1.24 6.74 99.48 0.67 -0.57 16 30 H -0.27 -1.72 7.11 99.48 0.71 -1.01 16 31 H 0.05 -0.30 7.34 -2.39 -0.02 -0.32 16 32 H 0.08 0.19 5.82 -2.39 -0.01 0.18 16 33 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.10 -1.26 7.48 -2.39 -0.02 -1.28 16 35 H 0.13 -1.26 8.06 -2.38 -0.02 -1.28 16 36 H 0.39 -3.88 8.83 -215.51 -1.90 -5.78 16 37 H 0.07 -0.12 8.03 -2.39 -0.02 -0.14 16 38 H 0.06 -0.36 7.78 -2.39 -0.02 -0.38 16 39 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.06 0.08 7.96 -2.38 -0.02 0.06 16 41 H 0.08 -0.59 7.99 -2.39 -0.02 -0.60 16 42 H 0.08 -0.39 7.99 -2.39 -0.02 -0.41 16 43 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 44 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 45 H 0.08 -0.53 7.96 -2.39 -0.02 -0.55 16 46 H 0.06 0.23 7.96 -2.39 -0.02 0.21 16 47 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 48 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 49 H 0.07 -0.55 7.92 -2.39 -0.02 -0.57 16 50 H 0.09 -0.26 7.99 -2.39 -0.02 -0.28 16 51 H 0.16 -1.86 7.14 -2.91 -0.02 -1.88 16 52 H 0.16 -1.12 7.15 -2.91 -0.02 -1.14 16 53 H 0.13 0.32 4.89 -2.91 -0.01 0.30 16 54 H 0.09 0.21 7.78 -2.39 -0.02 0.20 16 55 H 0.37 0.41 8.39 -74.05 -0.62 -0.22 16 Total: 0.00 -17.37 448.12 4.32 -13.05 By element: Atomic # 1 Polarization: -15.62 SS G_CDS: -0.87 Total: -16.48 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 6.78 Total: 13.92 kcal Atomic # 7 Polarization: 3.89 SS G_CDS: -4.52 Total: -0.62 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -1.93 Total: -9.28 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 2.27 Total: -0.15 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: 2.59 Total: -0.44 kcal Total: -17.37 4.32 -13.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_6406254.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.684 kcal (2) G-P(sol) polarization free energy of solvation -17.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds