Wall clock time and date at job start Sun Mar 7 2021 09:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86294 * 109.98528 * 2 1 4 4 C 1.87530 * 110.00234 * 121.31476 * 2 1 3 5 5 C 1.53927 * 106.84657 * 163.09693 * 4 2 1 6 6 C 1.52626 * 109.31429 * 302.79408 * 5 4 2 7 7 N 1.46363 * 111.89259 * 76.52156 * 6 5 4 8 8 N 1.36599 * 111.00179 * 156.80556 * 7 6 5 9 9 C 1.34777 * 119.99780 * 235.43890 * 8 7 6 10 10 O 1.21690 * 120.00100 * 354.98789 * 9 8 7 11 11 C 1.46677 * 119.99678 * 174.99031 * 9 8 7 12 12 C 1.37872 * 126.23602 * 179.97438 * 11 9 8 13 13 C 1.39827 * 107.08860 * 180.02562 * 12 11 9 14 14 C 1.35452 * 107.86559 * 359.73989 * 13 12 11 15 15 C 1.50697 * 125.56464 * 180.26261 * 14 13 12 16 16 O 1.42899 * 109.47334 * 120.19516 * 15 14 13 17 17 Si 1.86300 * 109.47446 * 0.19290 * 15 14 13 18 18 H 1.48503 * 109.47226 * 180.02562 * 17 15 14 19 19 H 1.48499 * 109.47024 * 300.00474 * 17 15 14 20 20 H 1.48502 * 109.46751 * 60.00039 * 17 15 14 21 21 N 1.35535 * 108.86864 * 0.42959 * 14 13 12 22 22 C 1.47729 * 111.30630 * 280.98527 * 7 6 5 23 23 H 1.09004 * 109.46704 * 298.68293 * 1 2 3 24 24 H 1.08998 * 109.47244 * 58.68628 * 1 2 3 25 25 H 1.08998 * 109.46908 * 178.68973 * 1 2 3 26 26 H 1.09005 * 109.47177 * 181.31964 * 3 2 1 27 27 H 1.09005 * 109.46980 * 301.31619 * 3 2 1 28 28 H 1.09000 * 109.47469 * 61.31418 * 3 2 1 29 29 H 1.09001 * 109.97367 * 43.76273 * 4 2 1 30 30 H 1.08996 * 110.04854 * 282.47329 * 4 2 1 31 31 H 1.08997 * 109.49566 * 182.84456 * 5 4 2 32 32 H 1.08994 * 109.50176 * 62.74235 * 5 4 2 33 33 H 1.09000 * 108.99387 * 315.90526 * 6 5 4 34 34 H 1.09001 * 108.93462 * 197.10287 * 6 5 4 35 35 H 0.97003 * 119.99411 * 55.43560 * 8 7 6 36 36 H 1.08006 * 126.44951 * 0.04674 * 12 11 9 37 37 H 1.08005 * 126.06826 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.46966 * 240.19351 * 15 14 13 39 39 H 0.96698 * 113.99947 * 179.97438 * 16 15 14 40 40 H 0.97003 * 125.67484 * 179.82853 * 21 14 13 41 41 H 1.08999 * 109.94655 * 179.67867 * 22 7 6 42 42 H 1.09000 * 109.94421 * 300.93231 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4998 1.7507 0.0000 4 6 2.5045 -0.9159 1.5055 5 6 3.9816 -1.2491 1.2291 6 6 4.0831 -2.0637 -0.0576 7 7 3.9262 -1.2262 -1.2476 8 7 4.5042 -1.8117 -2.3381 9 6 5.4349 -1.1433 -3.0477 10 8 5.6945 0.0135 -2.7733 11 6 6.1347 -1.8102 -4.1508 12 6 7.1036 -1.2519 -4.9573 13 6 7.4942 -2.2355 -5.8712 14 6 6.7774 -3.3545 -5.6092 15 6 6.8865 -4.6598 -6.3543 16 8 7.2697 -5.6955 -5.4473 17 14 8.1692 -4.5036 -7.6963 18 1 8.2762 -5.7898 -8.4310 19 1 7.7709 -3.4273 -8.6388 20 1 9.4824 -4.1690 -7.0892 21 7 5.9434 -3.1074 -4.5698 22 6 2.5042 -0.9182 -1.5035 23 1 -0.3633 0.4933 0.9016 24 1 -0.3634 0.5341 -0.8779 25 1 -0.3633 -1.0274 -0.0235 26 1 3.5895 1.7411 -0.0237 27 1 2.1219 2.2748 -0.8780 28 1 2.1604 2.2609 0.9015 29 1 1.9366 -1.8346 1.6523 30 1 2.4245 -0.2836 2.3897 31 1 4.3853 -1.8285 2.0593 32 1 4.5489 -0.3248 1.1200 33 1 3.3055 -2.8275 -0.0562 34 1 5.0579 -2.5503 -0.0922 35 1 4.2449 -2.7085 -2.6015 36 1 7.4885 -0.2447 -4.8947 37 1 8.2390 -2.1242 -6.6455 38 1 5.9225 -4.9054 -6.7999 39 1 7.3588 -6.5658 -5.8592 40 1 5.3186 -3.7406 -4.1829 41 1 2.4134 -0.2900 -2.3896 42 1 1.9428 -1.8422 -1.6424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_6580494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:34:27 Heat of formation + Delta-G solvation = -27.871924 kcal Electronic energy + Delta-G solvation = -22202.902876 eV Core-core repulsion = 18922.207044 eV Total energy + Delta-G solvation = -3280.695832 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.42791 -40.54703 -38.34213 -37.76952 -34.95556 -32.57000 -31.75714 -30.93436 -29.41908 -28.40136 -27.65667 -26.93016 -24.86412 -22.86057 -22.00649 -21.43970 -21.04037 -19.65385 -18.69514 -18.28737 -16.89816 -16.77977 -16.34329 -15.66346 -15.48021 -15.22843 -14.90496 -14.87621 -14.65015 -14.53052 -14.17796 -14.10460 -13.84527 -13.80188 -13.59099 -13.51614 -13.26927 -13.14714 -13.02786 -12.77662 -12.12522 -12.11764 -12.06360 -11.99936 -11.36384 -10.87771 -10.82165 -10.63429 -10.41729 -10.15685 -10.00598 -9.76884 -9.17359 0.44923 0.97280 1.34981 1.38838 1.47151 1.64396 1.72512 1.80350 1.85553 2.03752 2.14185 2.50877 2.55205 3.15808 3.32544 3.71759 3.82706 3.90526 4.07758 4.09648 4.31189 4.34366 4.44529 4.47108 4.57553 4.63334 4.65118 4.68338 4.79979 4.88581 4.94447 4.99570 5.05805 5.13673 5.21440 5.34691 5.41124 5.65812 5.70417 5.74350 5.87718 6.22132 6.29113 6.34354 6.49211 7.53509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.032 2.968 3 C -0.443 4.443 4 C -0.410 4.410 5 C -0.100 4.100 6 C 0.025 3.975 7 N -0.272 5.272 8 N -0.589 5.589 9 C 0.606 3.394 10 O -0.498 6.498 11 C -0.047 4.047 12 C -0.094 4.094 13 C -0.205 4.205 14 C 0.067 3.933 15 C -0.069 4.069 16 O -0.550 6.550 17 Si 0.973 3.027 18 H -0.256 1.256 19 H -0.246 1.246 20 H -0.243 1.243 21 N -0.523 5.523 22 C -0.262 4.262 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.370 0.630 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.078 0.922 39 H 0.385 0.615 40 H 0.416 0.584 41 H 0.091 0.909 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.811 -5.095 -1.163 5.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.225 2.775 3 C -0.552 4.552 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.102 4.102 7 N -0.088 5.088 8 N -0.333 5.333 9 C 0.394 3.606 10 O -0.369 6.369 11 C -0.162 4.162 12 C -0.121 4.121 13 C -0.229 4.229 14 C -0.051 4.051 15 C -0.179 4.179 16 O -0.356 6.356 17 Si 0.792 3.208 18 H -0.180 1.180 19 H -0.169 1.169 20 H -0.166 1.166 21 N -0.120 5.120 22 C -0.435 4.435 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.207 0.793 36 H 0.173 0.827 37 H 0.164 0.836 38 H 0.096 0.904 39 H 0.233 0.767 40 H 0.253 0.747 41 H 0.110 0.890 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.846 -3.341 -1.041 3.956 hybrid contribution -1.362 -2.275 -0.146 2.655 sum -3.208 -5.616 -1.186 6.575 Atomic orbital electron populations 1.26119 1.20355 1.04499 1.04857 0.79207 0.65830 0.67790 0.64687 1.26021 1.07392 1.17622 1.04116 1.26384 1.00679 1.08096 1.14461 1.21185 0.96671 1.01157 0.94863 1.22580 1.02215 0.95248 0.90204 1.62989 1.13930 1.38144 0.93751 1.45501 1.42221 1.17437 1.28134 1.16816 0.78065 0.85789 0.79972 1.90852 1.63666 1.15398 1.67030 1.20419 1.06943 0.85715 1.03125 1.21275 0.96303 1.00063 0.94414 1.20649 1.04643 0.93178 1.04463 1.19843 0.96421 0.95470 0.93341 1.24571 1.07703 0.85961 0.99619 1.86486 1.91912 1.19873 1.37340 0.85327 0.78527 0.81346 0.75574 1.17972 1.16881 1.16586 1.41906 1.32286 1.11187 1.26591 1.28109 0.90877 1.06918 1.17569 0.90672 0.91039 0.91288 0.90256 0.91321 0.91358 0.90725 0.90004 0.90749 0.90130 0.93670 0.90078 0.79267 0.82747 0.83553 0.90443 0.76661 0.74701 0.89017 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.77 8.65 101.05 0.87 1.64 16 2 Si 1.03 -1.95 11.99 -169.99 -2.04 -3.99 16 3 C -0.44 -0.10 8.65 101.05 0.87 0.78 16 4 C -0.41 0.67 5.03 37.64 0.19 0.86 16 5 C -0.10 0.06 5.74 -26.44 -0.15 -0.10 16 6 C 0.03 0.00 5.38 -4.31 -0.02 -0.03 16 7 N -0.27 -0.40 4.15 -56.96 -0.24 -0.64 16 8 N -0.59 -0.80 4.71 30.26 0.14 -0.66 16 9 C 0.61 2.47 7.89 -12.85 -0.10 2.37 16 10 O -0.50 -3.94 17.21 5.20 0.09 -3.86 16 11 C -0.05 -0.13 7.05 -81.98 -0.58 -0.71 16 12 C -0.09 -0.28 10.65 -39.12 -0.42 -0.69 16 13 C -0.20 -0.34 9.32 -39.98 -0.37 -0.71 16 14 C 0.07 0.05 6.51 -81.95 -0.53 -0.48 16 15 C -0.07 0.12 3.07 36.00 0.11 0.23 16 16 O -0.55 0.79 12.86 -35.23 -0.45 0.34 16 17 Si 0.97 -1.72 25.83 -169.99 -4.39 -6.11 16 18 H -0.26 0.46 7.11 56.52 0.40 0.87 16 19 H -0.25 0.25 7.11 56.52 0.40 0.65 16 20 H -0.24 0.00 7.11 56.52 0.40 0.40 16 21 N -0.52 -0.18 5.99 -5.70 -0.03 -0.22 16 22 C -0.26 0.04 4.86 60.52 0.29 0.33 16 23 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 24 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 25 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 26 H 0.08 0.14 7.96 -51.93 -0.41 -0.27 16 27 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 28 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 29 H 0.07 -0.16 7.99 -51.93 -0.42 -0.57 16 30 H 0.08 -0.15 7.99 -51.93 -0.42 -0.57 16 31 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 32 H 0.08 0.04 7.96 -51.93 -0.41 -0.38 16 33 H 0.05 -0.07 7.78 -51.93 -0.40 -0.47 16 34 H 0.08 0.01 8.03 -51.93 -0.42 -0.41 16 35 H 0.37 -0.53 7.97 -185.15 -1.48 -2.01 16 36 H 0.15 0.37 8.06 -52.48 -0.42 -0.05 16 37 H 0.15 0.00 6.17 -52.48 -0.32 -0.33 16 38 H 0.08 -0.29 7.96 -51.93 -0.41 -0.71 16 39 H 0.39 -2.24 8.74 45.56 0.40 -1.84 16 40 H 0.42 -0.94 8.20 -40.82 -0.33 -1.28 16 41 H 0.09 0.09 7.99 -51.93 -0.41 -0.33 16 42 H 0.05 -0.07 7.92 -51.93 -0.41 -0.48 16 LS Contribution 345.55 15.07 5.21 5.21 Total: 0.00 -8.43 345.55 -8.71 -17.14 By element: Atomic # 1 Polarization: -3.54 SS G_CDS: -7.16 Total: -10.70 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 0.17 Total: 3.49 kcal Atomic # 7 Polarization: -1.38 SS G_CDS: -0.13 Total: -1.51 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: -0.36 Total: -3.52 kcal Atomic # 14 Polarization: -3.68 SS G_CDS: -6.43 Total: -10.10 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -8.43 -8.71 -17.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_6580494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.736 kcal (2) G-P(sol) polarization free energy of solvation -8.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds