Wall clock time and date at job start Sun Mar 7 2021 09:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86294 * 109.98528 * 2 1 4 4 C 1.87530 * 110.00234 * 121.31476 * 2 1 3 5 5 C 1.53927 * 106.84657 * 163.09693 * 4 2 1 6 6 C 1.52626 * 109.31429 * 302.79408 * 5 4 2 7 7 N 1.46363 * 111.89259 * 76.52156 * 6 5 4 8 8 N 1.36599 * 111.00179 * 156.80556 * 7 6 5 9 9 C 1.34777 * 119.99780 * 235.43890 * 8 7 6 10 10 O 1.21690 * 120.00100 * 354.98789 * 9 8 7 11 11 C 1.46677 * 119.99678 * 174.99031 * 9 8 7 12 12 C 1.37872 * 126.23602 * 179.97438 * 11 9 8 13 13 C 1.39827 * 107.08860 * 180.02562 * 12 11 9 14 14 C 1.35452 * 107.86559 * 359.73989 * 13 12 11 15 15 C 1.50697 * 125.56464 * 180.26261 * 14 13 12 16 16 O 1.42899 * 109.47334 * 120.19516 * 15 14 13 17 17 Si 1.86300 * 109.47446 * 0.19290 * 15 14 13 18 18 H 1.48503 * 109.47226 * 180.02562 * 17 15 14 19 19 H 1.48499 * 109.47024 * 300.00474 * 17 15 14 20 20 H 1.48502 * 109.46751 * 60.00039 * 17 15 14 21 21 N 1.35535 * 108.86864 * 0.42959 * 14 13 12 22 22 C 1.47729 * 111.30630 * 280.98527 * 7 6 5 23 23 H 1.09004 * 109.46704 * 298.68293 * 1 2 3 24 24 H 1.08998 * 109.47244 * 58.68628 * 1 2 3 25 25 H 1.08998 * 109.46908 * 178.68973 * 1 2 3 26 26 H 1.09005 * 109.47177 * 181.31964 * 3 2 1 27 27 H 1.09005 * 109.46980 * 301.31619 * 3 2 1 28 28 H 1.09000 * 109.47469 * 61.31418 * 3 2 1 29 29 H 1.09001 * 109.97367 * 43.76273 * 4 2 1 30 30 H 1.08996 * 110.04854 * 282.47329 * 4 2 1 31 31 H 1.08997 * 109.49566 * 182.84456 * 5 4 2 32 32 H 1.08994 * 109.50176 * 62.74235 * 5 4 2 33 33 H 1.09000 * 108.99387 * 315.90526 * 6 5 4 34 34 H 1.09001 * 108.93462 * 197.10287 * 6 5 4 35 35 H 0.97003 * 119.99411 * 55.43560 * 8 7 6 36 36 H 1.08006 * 126.44951 * 0.04674 * 12 11 9 37 37 H 1.08005 * 126.06826 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.46966 * 240.19351 * 15 14 13 39 39 H 0.96698 * 113.99947 * 179.97438 * 16 15 14 40 40 H 0.97003 * 125.67484 * 179.82853 * 21 14 13 41 41 H 1.08999 * 109.94655 * 179.67867 * 22 7 6 42 42 H 1.09000 * 109.94421 * 300.93231 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4998 1.7507 0.0000 4 6 2.5045 -0.9159 1.5055 5 6 3.9816 -1.2491 1.2291 6 6 4.0831 -2.0637 -0.0576 7 7 3.9262 -1.2262 -1.2476 8 7 4.5042 -1.8117 -2.3381 9 6 5.4349 -1.1433 -3.0477 10 8 5.6945 0.0135 -2.7733 11 6 6.1347 -1.8102 -4.1508 12 6 7.1036 -1.2519 -4.9573 13 6 7.4942 -2.2355 -5.8712 14 6 6.7774 -3.3545 -5.6092 15 6 6.8865 -4.6598 -6.3543 16 8 7.2697 -5.6955 -5.4473 17 14 8.1692 -4.5036 -7.6963 18 1 8.2762 -5.7898 -8.4310 19 1 7.7709 -3.4273 -8.6388 20 1 9.4824 -4.1690 -7.0892 21 7 5.9434 -3.1074 -4.5698 22 6 2.5042 -0.9182 -1.5035 23 1 -0.3633 0.4933 0.9016 24 1 -0.3634 0.5341 -0.8779 25 1 -0.3633 -1.0274 -0.0235 26 1 3.5895 1.7411 -0.0237 27 1 2.1219 2.2748 -0.8780 28 1 2.1604 2.2609 0.9015 29 1 1.9366 -1.8346 1.6523 30 1 2.4245 -0.2836 2.3897 31 1 4.3853 -1.8285 2.0593 32 1 4.5489 -0.3248 1.1200 33 1 3.3055 -2.8275 -0.0562 34 1 5.0579 -2.5503 -0.0922 35 1 4.2449 -2.7085 -2.6015 36 1 7.4885 -0.2447 -4.8947 37 1 8.2390 -2.1242 -6.6455 38 1 5.9225 -4.9054 -6.7999 39 1 7.3588 -6.5658 -5.8592 40 1 5.3186 -3.7406 -4.1829 41 1 2.4134 -0.2900 -2.3896 42 1 1.9428 -1.8422 -1.6424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_6580494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:34:26 Heat of formation + Delta-G solvation = -26.481775 kcal Electronic energy + Delta-G solvation = -22202.842595 eV Core-core repulsion = 18922.207044 eV Total energy + Delta-G solvation = -3280.635551 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.54545 -40.70968 -38.51496 -37.65202 -35.02525 -32.65402 -31.88229 -30.96250 -29.33881 -28.35464 -27.60851 -26.94567 -24.87091 -22.96839 -22.02018 -21.53881 -21.18389 -19.76604 -18.53399 -18.36269 -16.99376 -16.86904 -16.26053 -15.78269 -15.60502 -15.22178 -14.91425 -14.85748 -14.68341 -14.50989 -14.27982 -13.99439 -13.88652 -13.80580 -13.56939 -13.51756 -13.19564 -13.12399 -13.01332 -12.71651 -12.06399 -12.01556 -11.99751 -11.93602 -11.53601 -10.97022 -10.80816 -10.48849 -10.38490 -10.26004 -10.12441 -9.77190 -9.29435 0.27702 1.09144 1.35578 1.47851 1.53239 1.64362 1.79126 1.90262 1.96117 2.08910 2.15909 2.28000 2.60831 3.30986 3.32179 3.73719 3.84294 3.97647 4.12945 4.18761 4.24939 4.38071 4.45201 4.50380 4.65638 4.70928 4.79980 4.80148 4.83918 4.84775 4.90348 4.90861 5.02507 5.08614 5.29315 5.46505 5.53867 5.57410 5.65993 5.71920 5.77778 6.07206 6.24744 6.40330 6.74573 7.36493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.094 2.906 3 C -0.466 4.466 4 C -0.411 4.411 5 C -0.103 4.103 6 C 0.025 3.975 7 N -0.298 5.298 8 N -0.577 5.577 9 C 0.605 3.395 10 O -0.549 6.549 11 C -0.061 4.061 12 C -0.113 4.113 13 C -0.221 4.221 14 C 0.071 3.929 15 C -0.064 4.064 16 O -0.565 6.565 17 Si 1.004 2.996 18 H -0.248 1.248 19 H -0.258 1.258 20 H -0.274 1.274 21 N -0.510 5.510 22 C -0.274 4.274 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.386 0.614 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.107 0.893 39 H 0.405 0.595 40 H 0.429 0.571 41 H 0.075 0.925 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.221 -7.348 -1.061 8.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.282 2.718 3 C -0.571 4.571 4 C -0.498 4.498 5 C -0.142 4.142 6 C -0.102 4.102 7 N -0.115 5.115 8 N -0.320 5.320 9 C 0.394 3.606 10 O -0.425 6.425 11 C -0.176 4.176 12 C -0.140 4.140 13 C -0.245 4.245 14 C -0.048 4.048 15 C -0.174 4.174 16 O -0.375 6.375 17 Si 0.826 3.174 18 H -0.172 1.172 19 H -0.182 1.182 20 H -0.198 1.198 21 N -0.108 5.108 22 C -0.445 4.445 23 H 0.097 0.903 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.226 0.774 36 H 0.166 0.834 37 H 0.174 0.826 38 H 0.125 0.875 39 H 0.257 0.743 40 H 0.268 0.732 41 H 0.094 0.906 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.277 -5.650 -0.952 6.601 hybrid contribution -0.873 -1.582 -0.207 1.819 sum -4.150 -7.232 -1.159 8.418 Atomic orbital electron populations 1.26141 1.19930 1.05126 1.04992 0.78288 0.65249 0.64841 0.63401 1.26346 1.06052 1.20688 1.04045 1.26410 0.99842 1.08882 1.14623 1.21211 0.97461 1.00507 0.95010 1.22612 1.02604 0.95468 0.89542 1.62979 1.14978 1.39371 0.94146 1.45331 1.41223 1.17799 1.27692 1.17034 0.78137 0.85315 0.80140 1.90817 1.65482 1.17510 1.68662 1.20212 1.07363 0.86775 1.03229 1.21428 0.96914 1.00384 0.95265 1.20860 1.05422 0.93380 1.04812 1.20307 0.95365 0.96364 0.92810 1.24571 1.09179 0.84892 0.98764 1.86435 1.92018 1.21062 1.37984 0.84885 0.76711 0.80948 0.74881 1.17206 1.18210 1.19828 1.41845 1.32212 1.10480 1.26234 1.28340 0.90200 1.07858 1.18091 0.90279 0.91245 0.90371 0.92458 0.92083 0.90786 0.89270 0.89509 0.89927 0.91837 0.91662 0.90691 0.77434 0.83424 0.82561 0.87515 0.74349 0.73156 0.90591 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.11 8.65 113.37 0.98 3.09 16 2 Si 1.09 -4.26 11.99 68.60 0.82 -3.44 16 3 C -0.47 -1.03 8.65 113.37 0.98 -0.05 16 4 C -0.41 1.76 5.03 72.30 0.36 2.13 16 5 C -0.10 0.11 5.74 30.78 0.18 0.29 16 6 C 0.02 -0.01 5.38 86.28 0.46 0.45 16 7 N -0.30 -1.11 4.15 -334.12 -1.39 -2.50 16 8 N -0.58 -2.06 4.71 -176.39 -0.83 -2.89 16 9 C 0.61 6.15 7.89 86.45 0.68 6.83 16 10 O -0.55 -10.47 17.21 -4.32 -0.07 -10.55 16 11 C -0.06 -0.41 7.05 40.35 0.28 -0.13 16 12 C -0.11 -0.90 10.65 22.57 0.24 -0.66 16 13 C -0.22 -0.94 9.32 22.01 0.21 -0.74 16 14 C 0.07 0.09 6.51 41.34 0.27 0.36 16 15 C -0.06 0.32 3.07 71.24 0.22 0.54 16 16 O -0.57 2.60 12.86 -148.98 -1.92 0.68 16 17 Si 1.00 -4.11 25.83 68.60 1.77 -2.34 16 18 H -0.25 1.29 7.11 99.48 0.71 2.00 16 19 H -0.26 0.55 7.11 99.48 0.71 1.25 16 20 H -0.27 -0.24 7.11 99.48 0.71 0.47 16 21 N -0.51 -0.31 5.99 -171.94 -1.03 -1.34 16 22 C -0.27 0.03 4.86 127.53 0.62 0.65 16 23 H 0.08 -0.39 7.96 -2.38 -0.02 -0.41 16 24 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 25 H 0.08 -0.46 7.96 -2.39 -0.02 -0.48 16 26 H 0.06 0.38 7.96 -2.38 -0.02 0.36 16 27 H 0.06 0.20 7.96 -2.38 -0.02 0.18 16 28 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 29 H 0.09 -0.59 7.99 -2.39 -0.02 -0.61 16 30 H 0.09 -0.41 7.99 -2.39 -0.02 -0.43 16 31 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.06 0.15 7.96 -2.39 -0.02 0.13 16 33 H 0.07 -0.30 7.78 -2.39 -0.02 -0.32 16 34 H 0.07 0.04 8.03 -2.39 -0.02 0.02 16 35 H 0.39 -1.18 7.97 -215.49 -1.72 -2.90 16 36 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.16 0.17 6.17 -2.91 -0.02 0.16 16 38 H 0.11 -1.10 7.96 -2.39 -0.02 -1.12 16 39 H 0.40 -5.55 8.74 -74.06 -0.65 -6.20 16 40 H 0.43 -2.33 8.20 -92.71 -0.76 -3.09 16 41 H 0.08 0.24 7.99 -2.39 -0.02 0.22 16 42 H 0.07 -0.27 7.92 -2.39 -0.02 -0.29 16 Total: 0.00 -21.53 345.55 1.51 -20.02 By element: Atomic # 1 Polarization: -9.07 SS G_CDS: -1.33 Total: -10.41 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 5.49 Total: 12.76 kcal Atomic # 7 Polarization: -3.48 SS G_CDS: -3.25 Total: -6.72 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -1.99 Total: -9.87 kcal Atomic # 14 Polarization: -8.38 SS G_CDS: 2.59 Total: -5.78 kcal Total: -21.53 1.51 -20.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_6580494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.464 kcal (2) G-P(sol) polarization free energy of solvation -21.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds