Wall clock time and date at job start Sun Mar 7 2021 09:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35962 * 117.00233 * 2 1 4 4 C 1.39445 * 120.12429 * 180.02562 * 3 2 1 5 5 O 1.34776 * 133.24520 * 359.94149 * 4 3 2 6 6 C 1.34920 * 110.84346 * 180.02562 * 5 4 3 7 7 C 1.46999 * 125.13951 * 180.02562 * 6 5 4 8 8 O 1.21646 * 120.00173 * 179.97438 * 7 6 5 9 9 N 1.34782 * 119.99813 * 359.97438 * 7 6 5 10 10 N 1.36594 * 120.00090 * 174.99056 * 9 7 6 11 11 C 1.46356 * 111.00117 * 235.43050 * 10 9 7 12 12 C 1.52627 * 111.88852 * 156.80189 * 11 10 9 13 13 C 1.53931 * 109.31086 * 76.52660 * 12 11 10 14 14 Si 1.87521 * 106.84681 * 302.78915 * 13 12 11 15 15 C 1.86302 * 110.00248 * 163.09905 * 14 13 12 16 16 C 1.86292 * 110.00567 * 284.40397 * 14 13 12 17 17 C 1.47728 * 111.00012 * 111.08089 * 10 9 7 18 18 C 1.35809 * 109.72233 * 0.02562 * 6 5 4 19 19 C 1.40613 * 119.13834 * 179.97438 * 4 3 2 20 20 C 1.39777 * 120.11721 * 359.97438 * 19 4 3 21 21 C 1.50702 * 120.09231 * 179.97438 * 20 19 4 22 22 O 1.42899 * 109.47341 * 74.99763 * 21 20 19 23 23 Si 1.86300 * 109.47069 * 195.00100 * 21 20 19 24 24 H 1.48495 * 109.47527 * 59.99242 * 23 21 20 25 25 H 1.48498 * 109.47428 * 180.02562 * 23 21 20 26 26 H 1.48513 * 109.46865 * 299.99548 * 23 21 20 27 27 C 1.36631 * 119.81639 * 359.97438 * 20 19 4 28 28 C 1.38262 * 120.11500 * 359.72044 * 3 2 1 29 29 H 1.09006 * 109.47229 * 299.99730 * 1 2 3 30 30 H 1.08995 * 109.47307 * 60.00515 * 1 2 3 31 31 H 1.09002 * 109.47141 * 180.02562 * 1 2 3 32 32 H 0.97004 * 119.99818 * 354.98022 * 9 7 6 33 33 H 1.09000 * 108.99749 * 277.42034 * 11 10 9 34 34 H 1.08999 * 108.99350 * 36.26222 * 11 10 9 35 35 H 1.09007 * 109.49368 * 196.47353 * 12 11 10 36 36 H 1.08995 * 109.50292 * 316.56895 * 12 11 10 37 37 H 1.09003 * 109.97879 * 62.12697 * 13 12 11 38 38 H 1.09002 * 109.97739 * 183.36834 * 13 12 11 39 39 H 1.08999 * 109.47075 * 60.00407 * 15 14 13 40 40 H 1.09003 * 109.47572 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.47350 * 300.00547 * 15 14 13 42 42 H 1.09000 * 109.47608 * 60.00170 * 16 14 13 43 43 H 1.09004 * 109.47725 * 179.97438 * 16 14 13 44 44 H 1.08995 * 109.47282 * 299.99798 * 16 14 13 45 45 H 1.09000 * 109.94892 * 303.85498 * 17 10 9 46 46 H 1.08996 * 109.95068 * 65.11717 * 17 10 9 47 47 H 1.07995 * 126.95594 * 180.02562 * 18 6 5 48 48 H 1.09002 * 109.46988 * 314.99374 * 21 20 19 49 49 H 0.96699 * 114.00105 * 60.00006 * 22 21 20 50 50 H 1.07996 * 119.75678 * 180.02562 * 27 20 19 51 51 H 1.08001 * 119.66491 * 0.02967 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4386 1.2874 -0.0005 5 8 4.4141 0.3573 -0.0001 6 6 5.6317 0.9387 -0.0004 7 6 6.9131 0.2185 -0.0007 8 8 7.9595 0.8388 -0.0014 9 7 6.9287 -1.1292 0.0000 10 7 8.1149 -1.7986 -0.1035 11 6 8.0932 -2.7331 -1.2297 12 6 9.4995 -3.0607 -1.7243 13 6 10.1628 -4.0529 -0.7522 14 14 10.1455 -3.2482 0.9415 15 6 10.4447 -4.5305 2.2594 16 6 11.4538 -1.9250 1.0318 17 6 8.4454 -2.4886 1.1602 18 6 5.4944 2.2898 -0.0005 19 6 4.0554 2.5510 -0.0011 20 6 3.2765 3.7116 -0.0016 21 6 3.9381 5.0656 -0.0016 22 8 4.4611 5.3403 -1.3028 23 14 2.6862 6.3685 0.4523 24 1 2.1426 6.0831 1.8044 25 1 3.3379 7.7028 0.4517 26 1 1.5797 6.3582 -0.5383 27 6 1.9136 3.6151 -0.0021 28 6 1.2956 2.3725 -0.0058 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 6.0975 -1.6238 0.0741 33 1 7.6036 -3.6552 -0.9163 34 1 7.5249 -2.2901 -2.0475 35 1 9.4411 -3.5078 -2.7168 36 1 10.0910 -2.1465 -1.7709 37 1 9.5975 -4.9846 -0.7276 38 1 11.1892 -4.2485 -1.0625 39 1 11.4145 -5.0004 2.0957 40 1 10.4325 -4.0539 3.2397 41 1 9.6619 -5.2877 2.2141 42 1 11.2576 -1.1676 0.2730 43 1 11.4359 -1.4630 2.0189 44 1 12.4332 -2.3699 0.8563 45 1 8.4611 -1.7725 1.9818 46 1 7.7121 -3.2697 1.3603 47 1 6.2873 3.0230 -0.0012 48 1 4.7502 5.0732 0.7255 49 1 3.7927 5.3494 -2.0015 50 1 1.3127 4.5125 -0.0030 51 1 0.2173 2.3119 -0.0099 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_6672420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:34:37 Heat of formation + Delta-G solvation = -68.979150 kcal Electronic energy + Delta-G solvation = -32817.774138 eV Core-core repulsion = 28423.141249 eV Total energy + Delta-G solvation = -4394.632889 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 378.162 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.63390 -41.01553 -40.48743 -39.09153 -38.47141 -36.99884 -34.96279 -33.52108 -32.23412 -31.68905 -30.63380 -29.40291 -28.67372 -28.38930 -27.62217 -26.39279 -25.68869 -23.95665 -23.90270 -21.99332 -21.85408 -21.56796 -19.80225 -18.96652 -18.74976 -18.26374 -17.74878 -17.63748 -17.03568 -16.82652 -16.47632 -16.22963 -15.98869 -15.86718 -15.28144 -15.13036 -14.95149 -14.84809 -14.63310 -14.53173 -14.40987 -14.10268 -14.08195 -13.82835 -13.60211 -13.57291 -13.43496 -13.35641 -13.25422 -13.13227 -13.01962 -12.64095 -12.37815 -12.17641 -12.09795 -12.09155 -12.04837 -11.67127 -11.50069 -10.95594 -10.90390 -10.84812 -10.44187 -10.41531 -10.19706 -9.78997 -9.74081 -8.97440 -0.54789 0.12766 0.77378 1.09153 1.19432 1.36370 1.48327 1.49518 1.73612 1.82161 1.87624 2.00758 2.06610 2.19520 2.42412 2.54511 3.16002 3.37349 3.48453 3.53570 3.63889 3.84770 3.88682 3.93693 4.01170 4.07014 4.08024 4.13946 4.20414 4.37811 4.44026 4.48197 4.48793 4.51414 4.59996 4.65877 4.67477 4.70653 4.82084 4.84549 4.89829 4.90437 4.95196 5.01868 5.09299 5.23022 5.24745 5.32640 5.36540 5.43469 5.63593 5.70895 5.74309 6.13606 6.15736 6.37825 6.54268 7.40152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.150 3.850 4 C 0.046 3.954 5 O -0.176 6.176 6 C -0.020 4.020 7 C 0.617 3.383 8 O -0.482 6.482 9 N -0.575 5.575 10 N -0.276 5.276 11 C 0.025 3.975 12 C -0.100 4.100 13 C -0.410 4.410 14 Si 1.033 2.967 15 C -0.450 4.450 16 C -0.443 4.443 17 C -0.262 4.262 18 C -0.102 4.102 19 C -0.079 4.079 20 C -0.097 4.097 21 C -0.079 4.079 22 O -0.533 6.533 23 Si 0.951 3.049 24 H -0.248 1.248 25 H -0.251 1.251 26 H -0.251 1.251 27 C -0.102 4.102 28 C -0.177 4.177 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.386 0.614 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.055 0.945 47 H 0.177 0.823 48 H 0.119 0.881 49 H 0.376 0.624 50 H 0.136 0.864 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 -2.284 0.215 5.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.104 3.896 4 C -0.003 4.003 5 O -0.077 6.077 6 C -0.072 4.072 7 C 0.402 3.598 8 O -0.355 6.355 9 N -0.318 5.318 10 N -0.092 5.092 11 C -0.103 4.103 12 C -0.138 4.138 13 C -0.496 4.496 14 Si 1.225 2.775 15 C -0.558 4.558 16 C -0.551 4.551 17 C -0.435 4.435 18 C -0.122 4.122 19 C -0.080 4.080 20 C -0.098 4.098 21 C -0.190 4.190 22 O -0.338 6.338 23 Si 0.773 3.227 24 H -0.171 1.171 25 H -0.174 1.174 26 H -0.175 1.175 27 C -0.120 4.120 28 C -0.196 4.196 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.225 0.775 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.194 0.806 48 H 0.137 0.863 49 H 0.223 0.777 50 H 0.153 0.847 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.683 -1.302 0.665 3.962 hybrid contribution -1.759 -1.234 -0.148 2.154 sum -5.442 -2.535 0.517 6.026 Atomic orbital electron populations 1.23184 0.77358 1.04726 1.01779 1.86170 1.22125 1.25727 1.88412 1.17732 0.86536 0.85826 0.99513 1.18779 0.87428 0.87039 1.07025 1.84061 1.12730 1.34786 1.76146 1.21994 0.83612 0.92624 1.08927 1.16376 0.85324 0.80897 0.77180 1.90903 1.30052 1.66773 1.47770 1.45421 1.05515 1.05422 1.75465 1.63001 1.14234 1.28285 1.03657 1.22587 0.99594 0.94597 0.93502 1.21190 0.94030 0.99779 0.98843 1.26387 1.03708 1.03909 1.15636 0.79203 0.64973 0.66367 0.66918 1.26119 1.05150 1.11937 1.12632 1.26020 1.11471 1.12639 1.05013 1.28128 1.17971 1.03339 0.94079 1.22738 0.94732 0.94195 1.00565 1.19381 0.92643 0.91940 1.04050 1.19438 0.92726 0.94600 1.03024 1.24994 1.06828 0.97547 0.89612 1.86558 1.37947 1.93365 1.15957 0.85687 0.77266 0.78483 0.81246 1.17119 1.17422 1.17472 1.20550 0.93558 0.97782 1.00082 1.20947 1.00323 0.90551 1.07811 0.92109 0.92107 0.87666 0.77518 0.93404 0.89934 0.90692 0.90138 0.90665 0.90005 0.90682 0.91036 0.91241 0.90269 0.91320 0.91345 0.88954 0.92692 0.80559 0.86332 0.77717 0.84685 0.83556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 101.05 0.99 0.93 16 2 O -0.31 -0.52 10.50 -19.62 -0.21 -0.73 16 3 C 0.15 0.30 6.70 -39.12 -0.26 0.04 16 4 C 0.05 0.16 7.35 -38.24 -0.28 -0.12 16 5 O -0.18 -0.64 10.29 2.68 0.03 -0.62 16 6 C -0.02 -0.07 7.07 -36.90 -0.26 -0.33 16 7 C 0.62 2.61 7.90 -12.71 -0.10 2.51 16 8 O -0.48 -3.45 17.16 5.24 0.09 -3.36 16 9 N -0.57 -1.24 4.71 30.33 0.14 -1.09 16 10 N -0.28 -0.46 4.15 -56.97 -0.24 -0.69 16 11 C 0.02 0.00 5.38 -4.31 -0.02 -0.02 16 12 C -0.10 0.06 5.74 -26.44 -0.15 -0.09 16 13 C -0.41 0.67 5.03 37.64 0.19 0.86 16 14 Si 1.03 -1.95 11.99 -169.99 -2.04 -3.99 16 15 C -0.45 0.73 8.65 101.05 0.87 1.61 16 16 C -0.44 -0.02 8.65 101.05 0.87 0.85 16 17 C -0.26 -0.01 4.86 60.52 0.29 0.29 16 18 C -0.10 -0.32 10.68 -37.24 -0.40 -0.71 16 19 C -0.08 -0.22 6.16 -105.21 -0.65 -0.87 16 20 C -0.10 -0.09 5.26 -104.63 -0.55 -0.64 16 21 C -0.08 0.02 2.70 36.01 0.10 0.11 16 22 O -0.53 -0.29 12.88 -35.23 -0.45 -0.74 16 23 Si 0.95 -1.01 25.50 -169.99 -4.33 -5.35 16 24 H -0.25 0.11 7.11 56.52 0.40 0.51 16 25 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 26 H -0.25 0.40 6.74 56.52 0.38 0.78 16 27 C -0.10 0.03 8.62 -39.96 -0.34 -0.32 16 28 C -0.18 0.04 9.03 -39.37 -0.36 -0.32 16 29 H 0.06 -0.22 7.67 -51.93 -0.40 -0.62 16 30 H 0.06 -0.22 7.65 -51.93 -0.40 -0.62 16 31 H 0.11 -0.40 8.14 -51.93 -0.42 -0.82 16 32 H 0.39 0.18 8.55 -185.16 -1.58 -1.40 16 33 H 0.05 -0.05 7.78 -51.93 -0.40 -0.46 16 34 H 0.08 0.02 8.03 -51.93 -0.42 -0.39 16 35 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 36 H 0.08 0.02 7.96 -51.93 -0.41 -0.40 16 37 H 0.07 -0.15 7.99 -51.93 -0.42 -0.57 16 38 H 0.08 -0.16 8.00 -51.93 -0.42 -0.57 16 39 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 40 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 41 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 42 H 0.08 0.12 7.96 -51.93 -0.41 -0.29 16 43 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 44 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 45 H 0.09 0.08 7.99 -51.93 -0.41 -0.33 16 46 H 0.05 -0.05 7.92 -51.93 -0.41 -0.46 16 47 H 0.18 0.40 8.06 -52.49 -0.42 -0.02 16 48 H 0.12 -0.08 7.96 -51.93 -0.41 -0.49 16 49 H 0.38 -1.06 8.70 45.56 0.40 -0.66 16 50 H 0.14 -0.30 4.84 -52.49 -0.25 -0.55 16 51 H 0.15 -0.43 6.26 -52.49 -0.33 -0.76 16 LS Contribution 417.13 15.07 6.29 6.29 Total: 0.00 -8.12 417.13 -9.21 -17.33 By element: Atomic # 1 Polarization: -2.38 SS G_CDS: -8.43 Total: -10.81 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -0.05 Total: 3.77 kcal Atomic # 7 Polarization: -1.69 SS G_CDS: -0.09 Total: -1.79 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.54 Total: -5.44 kcal Atomic # 14 Polarization: -2.96 SS G_CDS: -6.37 Total: -9.33 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -8.12 -9.21 -17.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_6672420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.651 kcal (2) G-P(sol) polarization free energy of solvation -8.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds