Wall clock time and date at job start Sun Mar 7 2021 09:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35962 * 117.00233 * 2 1 4 4 C 1.39445 * 120.12429 * 180.02562 * 3 2 1 5 5 O 1.34776 * 133.24520 * 359.94149 * 4 3 2 6 6 C 1.34920 * 110.84346 * 180.02562 * 5 4 3 7 7 C 1.46999 * 125.13951 * 180.02562 * 6 5 4 8 8 O 1.21646 * 120.00173 * 179.97438 * 7 6 5 9 9 N 1.34782 * 119.99813 * 359.97438 * 7 6 5 10 10 N 1.36594 * 120.00090 * 174.99056 * 9 7 6 11 11 C 1.46356 * 111.00117 * 235.43050 * 10 9 7 12 12 C 1.52627 * 111.88852 * 156.80189 * 11 10 9 13 13 C 1.53931 * 109.31086 * 76.52660 * 12 11 10 14 14 Si 1.87521 * 106.84681 * 302.78915 * 13 12 11 15 15 C 1.86302 * 110.00248 * 163.09905 * 14 13 12 16 16 C 1.86292 * 110.00567 * 284.40397 * 14 13 12 17 17 C 1.47728 * 111.00012 * 111.08089 * 10 9 7 18 18 C 1.35809 * 109.72233 * 0.02562 * 6 5 4 19 19 C 1.40613 * 119.13834 * 179.97438 * 4 3 2 20 20 C 1.39777 * 120.11721 * 359.97438 * 19 4 3 21 21 C 1.50702 * 120.09231 * 179.97438 * 20 19 4 22 22 O 1.42899 * 109.47341 * 74.99763 * 21 20 19 23 23 Si 1.86300 * 109.47069 * 195.00100 * 21 20 19 24 24 H 1.48495 * 109.47527 * 59.99242 * 23 21 20 25 25 H 1.48498 * 109.47428 * 180.02562 * 23 21 20 26 26 H 1.48513 * 109.46865 * 299.99548 * 23 21 20 27 27 C 1.36631 * 119.81639 * 359.97438 * 20 19 4 28 28 C 1.38262 * 120.11500 * 359.72044 * 3 2 1 29 29 H 1.09006 * 109.47229 * 299.99730 * 1 2 3 30 30 H 1.08995 * 109.47307 * 60.00515 * 1 2 3 31 31 H 1.09002 * 109.47141 * 180.02562 * 1 2 3 32 32 H 0.97004 * 119.99818 * 354.98022 * 9 7 6 33 33 H 1.09000 * 108.99749 * 277.42034 * 11 10 9 34 34 H 1.08999 * 108.99350 * 36.26222 * 11 10 9 35 35 H 1.09007 * 109.49368 * 196.47353 * 12 11 10 36 36 H 1.08995 * 109.50292 * 316.56895 * 12 11 10 37 37 H 1.09003 * 109.97879 * 62.12697 * 13 12 11 38 38 H 1.09002 * 109.97739 * 183.36834 * 13 12 11 39 39 H 1.08999 * 109.47075 * 60.00407 * 15 14 13 40 40 H 1.09003 * 109.47572 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.47350 * 300.00547 * 15 14 13 42 42 H 1.09000 * 109.47608 * 60.00170 * 16 14 13 43 43 H 1.09004 * 109.47725 * 179.97438 * 16 14 13 44 44 H 1.08995 * 109.47282 * 299.99798 * 16 14 13 45 45 H 1.09000 * 109.94892 * 303.85498 * 17 10 9 46 46 H 1.08996 * 109.95068 * 65.11717 * 17 10 9 47 47 H 1.07995 * 126.95594 * 180.02562 * 18 6 5 48 48 H 1.09002 * 109.46988 * 314.99374 * 21 20 19 49 49 H 0.96699 * 114.00105 * 60.00006 * 22 21 20 50 50 H 1.07996 * 119.75678 * 180.02562 * 27 20 19 51 51 H 1.08001 * 119.66491 * 0.02967 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4386 1.2874 -0.0005 5 8 4.4141 0.3573 -0.0001 6 6 5.6317 0.9387 -0.0004 7 6 6.9131 0.2185 -0.0007 8 8 7.9595 0.8388 -0.0014 9 7 6.9287 -1.1292 0.0000 10 7 8.1149 -1.7986 -0.1035 11 6 8.0932 -2.7331 -1.2297 12 6 9.4995 -3.0607 -1.7243 13 6 10.1628 -4.0529 -0.7522 14 14 10.1455 -3.2482 0.9415 15 6 10.4447 -4.5305 2.2594 16 6 11.4538 -1.9250 1.0318 17 6 8.4454 -2.4886 1.1602 18 6 5.4944 2.2898 -0.0005 19 6 4.0554 2.5510 -0.0011 20 6 3.2765 3.7116 -0.0016 21 6 3.9381 5.0656 -0.0016 22 8 4.4611 5.3403 -1.3028 23 14 2.6862 6.3685 0.4523 24 1 2.1426 6.0831 1.8044 25 1 3.3379 7.7028 0.4517 26 1 1.5797 6.3582 -0.5383 27 6 1.9136 3.6151 -0.0021 28 6 1.2956 2.3725 -0.0058 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 6.0975 -1.6238 0.0741 33 1 7.6036 -3.6552 -0.9163 34 1 7.5249 -2.2901 -2.0475 35 1 9.4411 -3.5078 -2.7168 36 1 10.0910 -2.1465 -1.7709 37 1 9.5975 -4.9846 -0.7276 38 1 11.1892 -4.2485 -1.0625 39 1 11.4145 -5.0004 2.0957 40 1 10.4325 -4.0539 3.2397 41 1 9.6619 -5.2877 2.2141 42 1 11.2576 -1.1676 0.2730 43 1 11.4359 -1.4630 2.0189 44 1 12.4332 -2.3699 0.8563 45 1 8.4611 -1.7725 1.9818 46 1 7.7121 -3.2697 1.3603 47 1 6.2873 3.0230 -0.0012 48 1 4.7502 5.0732 0.7255 49 1 3.7927 5.3494 -2.0015 50 1 1.3127 4.5125 -0.0030 51 1 0.2173 2.3119 -0.0099 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_6672420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:34:36 Heat of formation + Delta-G solvation = -65.425141 kcal Electronic energy + Delta-G solvation = -32817.620025 eV Core-core repulsion = 28423.141249 eV Total energy + Delta-G solvation = -4394.478776 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 378.162 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.80082 -41.19447 -40.56601 -39.10698 -38.68376 -37.01611 -35.04624 -33.68489 -32.33528 -31.75607 -30.71180 -29.33217 -28.55834 -28.34143 -27.59229 -26.38864 -25.77126 -24.06130 -23.97416 -22.02491 -21.94861 -21.75775 -19.94675 -19.06436 -18.80703 -18.33996 -17.86692 -17.74235 -17.09289 -16.88864 -16.46573 -16.22538 -16.20226 -15.84773 -15.41652 -15.12624 -14.95197 -14.88795 -14.69184 -14.56439 -14.40632 -14.26884 -13.98652 -13.79160 -13.59994 -13.51578 -13.47180 -13.32044 -13.18270 -13.11225 -13.01422 -12.49784 -12.31592 -12.09682 -12.08057 -12.06515 -12.01810 -11.76054 -11.61477 -11.07315 -11.03508 -10.79875 -10.43840 -10.41471 -10.27491 -9.89127 -9.82574 -9.04536 -0.70506 0.04864 0.59272 1.03313 1.16600 1.42814 1.46476 1.57287 1.76644 1.90292 1.91946 1.94945 2.07671 2.12029 2.35669 2.60808 3.04385 3.32540 3.43082 3.58605 3.66822 3.77901 3.84326 3.93280 3.97602 4.11928 4.15105 4.28174 4.37602 4.37626 4.41341 4.50686 4.52118 4.66107 4.70785 4.72065 4.80519 4.81014 4.81653 4.82802 4.84766 4.86449 4.91687 5.00209 5.09041 5.16892 5.29053 5.30133 5.47291 5.52456 5.57899 5.67816 5.74469 5.91091 6.09682 6.23713 6.72261 7.19117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.334 6.334 3 C 0.136 3.864 4 C 0.021 3.979 5 O -0.183 6.183 6 C -0.031 4.031 7 C 0.618 3.382 8 O -0.522 6.522 9 N -0.566 5.566 10 N -0.297 5.297 11 C 0.023 3.977 12 C -0.102 4.102 13 C -0.412 4.412 14 Si 1.095 2.905 15 C -0.454 4.454 16 C -0.463 4.463 17 C -0.277 4.277 18 C -0.105 4.105 19 C -0.093 4.093 20 C -0.102 4.102 21 C -0.088 4.088 22 O -0.551 6.551 23 Si 0.991 3.009 24 H -0.253 1.253 25 H -0.276 1.276 26 H -0.232 1.232 27 C -0.098 4.098 28 C -0.165 4.165 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.394 0.606 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.177 0.823 48 H 0.114 0.886 49 H 0.389 0.611 50 H 0.161 0.839 51 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 -2.980 0.106 7.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.090 3.910 4 C -0.027 4.027 5 O -0.085 6.085 6 C -0.082 4.082 7 C 0.403 3.597 8 O -0.398 6.398 9 N -0.308 5.308 10 N -0.113 5.113 11 C -0.104 4.104 12 C -0.140 4.140 13 C -0.498 4.498 14 Si 1.284 2.716 15 C -0.563 4.563 16 C -0.569 4.569 17 C -0.448 4.448 18 C -0.126 4.126 19 C -0.094 4.094 20 C -0.103 4.103 21 C -0.197 4.197 22 O -0.358 6.358 23 Si 0.813 3.187 24 H -0.177 1.177 25 H -0.202 1.202 26 H -0.155 1.155 27 C -0.116 4.116 28 C -0.184 4.184 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.234 0.766 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.194 0.806 48 H 0.132 0.868 49 H 0.238 0.762 50 H 0.178 0.822 51 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.710 -2.016 0.544 6.080 hybrid contribution -1.195 -0.983 -0.112 1.552 sum -6.906 -3.000 0.432 7.542 Atomic orbital electron populations 1.23482 0.75336 1.06019 1.03132 1.86141 1.24305 1.25842 1.88496 1.17963 0.86125 0.86798 1.00137 1.19228 0.88210 0.87209 1.08015 1.84017 1.12763 1.35162 1.76606 1.21855 0.83590 0.92750 1.10052 1.16491 0.85103 0.81422 0.76649 1.90867 1.31303 1.67608 1.50032 1.45378 1.06288 1.04955 1.74206 1.63046 1.14059 1.29308 1.04903 1.22646 1.00212 0.94789 0.92752 1.21213 0.93468 0.99644 0.99702 1.26412 1.04228 1.04073 1.15074 0.78281 0.61972 0.64637 0.66751 1.26149 1.05709 1.12037 1.12362 1.26307 1.13352 1.13364 1.03908 1.28426 1.20135 1.03229 0.92980 1.22865 0.95416 0.94172 1.00125 1.19545 0.92302 0.92666 1.04930 1.19662 0.93358 0.94398 1.02842 1.25216 1.07438 0.97658 0.89349 1.86526 1.39256 1.93351 1.16711 0.85125 0.76558 0.75921 0.81086 1.17692 1.20172 1.15542 1.20879 0.93132 0.98818 0.98732 1.21359 1.01779 0.89634 1.05596 0.90702 0.90661 0.86608 0.76604 0.91760 0.90596 0.89799 0.91479 0.89390 0.89288 0.90168 0.91239 0.90518 0.92236 0.92001 0.90666 0.90364 0.91403 0.80585 0.86764 0.76154 0.82173 0.80367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.09 9.81 113.37 1.11 1.03 16 2 O -0.33 -1.13 10.50 -93.12 -0.98 -2.11 16 3 C 0.14 0.55 6.70 22.57 0.15 0.70 16 4 C 0.02 0.18 7.35 23.14 0.17 0.35 16 5 O -0.18 -1.78 10.29 -13.34 -0.14 -1.92 16 6 C -0.03 -0.31 7.07 24.00 0.17 -0.14 16 7 C 0.62 7.12 7.90 86.54 0.68 7.80 16 8 O -0.52 -9.33 17.16 -4.18 -0.07 -9.40 16 9 N -0.57 -3.70 4.71 -176.17 -0.83 -4.52 16 10 N -0.30 -1.48 4.15 -334.14 -1.39 -2.87 16 11 C 0.02 0.02 5.38 86.28 0.46 0.48 16 12 C -0.10 0.09 5.74 30.78 0.18 0.26 16 13 C -0.41 1.63 5.03 72.30 0.36 2.00 16 14 Si 1.10 -3.86 11.99 68.60 0.82 -3.04 16 15 C -0.45 1.85 8.65 113.37 0.98 2.83 16 16 C -0.46 -0.82 8.65 113.37 0.98 0.16 16 17 C -0.28 -0.31 4.86 127.53 0.62 0.31 16 18 C -0.11 -0.95 10.68 23.79 0.25 -0.69 16 19 C -0.09 -0.66 6.16 -20.24 -0.12 -0.78 16 20 C -0.10 -0.21 5.26 -19.87 -0.10 -0.32 16 21 C -0.09 0.00 2.70 71.24 0.19 0.19 16 22 O -0.55 -0.93 12.88 -148.98 -1.92 -2.85 16 23 Si 0.99 -3.05 25.50 68.60 1.75 -1.30 16 24 H -0.25 0.55 7.11 99.48 0.71 1.26 16 25 H -0.28 -0.35 7.11 99.48 0.71 0.36 16 26 H -0.23 1.39 6.74 99.48 0.67 2.07 16 27 C -0.10 0.19 8.62 22.02 0.19 0.38 16 28 C -0.17 0.32 9.03 22.41 0.20 0.52 16 29 H 0.07 -0.68 7.67 -2.38 -0.02 -0.70 16 30 H 0.07 -0.69 7.65 -2.39 -0.02 -0.71 16 31 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 32 H 0.39 1.12 8.55 -215.50 -1.84 -0.72 16 33 H 0.06 -0.17 7.78 -2.39 -0.02 -0.19 16 34 H 0.08 0.14 8.03 -2.39 -0.02 0.12 16 35 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 36 H 0.07 0.13 7.96 -2.39 -0.02 0.11 16 37 H 0.09 -0.52 7.99 -2.39 -0.02 -0.54 16 38 H 0.09 -0.43 8.00 -2.39 -0.02 -0.45 16 39 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 40 H 0.07 -0.23 7.96 -2.39 -0.02 -0.24 16 41 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 42 H 0.06 0.34 7.96 -2.39 -0.02 0.32 16 43 H 0.06 0.17 7.96 -2.38 -0.02 0.15 16 44 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 45 H 0.08 0.30 7.99 -2.39 -0.02 0.28 16 46 H 0.07 -0.12 7.92 -2.39 -0.02 -0.14 16 47 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 48 H 0.11 0.02 7.96 -2.39 -0.02 0.00 16 49 H 0.39 -2.19 8.70 -74.06 -0.64 -2.83 16 50 H 0.16 -1.17 4.84 -2.91 -0.01 -1.18 16 51 H 0.18 -1.60 6.26 -2.91 -0.02 -1.62 16 Total: 0.00 -21.23 417.13 2.93 -18.30 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: -0.80 Total: -5.37 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 6.48 Total: 15.09 kcal Atomic # 7 Polarization: -5.18 SS G_CDS: -2.22 Total: -7.39 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -3.11 Total: -16.28 kcal Atomic # 14 Polarization: -6.91 SS G_CDS: 2.57 Total: -4.34 kcal Total: -21.23 2.93 -18.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_6672420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.125 kcal (2) G-P(sol) polarization free energy of solvation -21.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds