Wall clock time and date at job start Sun Mar 7 2021 09:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33812 * 122.44888 * 2 1 4 4 C 1.50707 * 124.52372 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.47008 * 29.99794 * 4 3 2 6 6 Si 1.86299 * 109.47009 * 149.99930 * 4 3 2 7 7 H 1.48497 * 109.47095 * 59.99990 * 6 4 3 8 8 H 1.48504 * 109.46809 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46877 * 299.99707 * 6 4 3 10 10 S 1.70612 * 110.95224 * 179.72532 * 3 2 1 11 11 C 1.75822 * 91.56491 * 0.32900 * 10 3 2 12 12 C 1.46588 * 125.45940 * 179.97438 * 11 10 3 13 13 O 1.21706 * 119.99739 * 179.68986 * 12 11 10 14 14 N 1.34773 * 119.99617 * 359.96557 * 12 11 10 15 15 N 1.36611 * 119.99449 * 174.71861 * 14 12 11 16 16 C 1.46357 * 110.99451 * 235.43398 * 15 14 12 17 17 C 1.52624 * 111.88976 * 156.80510 * 16 15 14 18 18 C 1.53932 * 109.31051 * 76.51956 * 17 16 15 19 19 Si 1.87517 * 106.85115 * 302.79531 * 18 17 16 20 20 C 1.86300 * 110.00453 * 163.09938 * 19 18 17 21 21 C 1.86298 * 110.00272 * 284.40577 * 19 18 17 22 22 C 1.47719 * 110.99996 * 111.08557 * 15 14 12 23 23 C 1.36647 * 109.08330 * 359.67568 * 11 10 3 24 24 H 1.08998 * 109.47473 * 269.99860 * 1 2 3 25 25 H 1.08998 * 109.47314 * 29.99578 * 1 2 3 26 26 H 1.08996 * 109.47342 * 149.99382 * 1 2 3 27 27 H 1.09004 * 109.46951 * 270.00099 * 4 3 2 28 28 H 0.96696 * 114.00419 * 60.00199 * 5 4 3 29 29 H 0.96991 * 120.00727 * 354.71122 * 14 12 11 30 30 H 1.09002 * 108.99500 * 277.42488 * 16 15 14 31 31 H 1.08996 * 109.00382 * 36.26062 * 16 15 14 32 32 H 1.09002 * 109.49803 * 196.47121 * 17 16 15 33 33 H 1.08998 * 109.49632 * 316.57051 * 17 16 15 34 34 H 1.09006 * 109.97624 * 62.13290 * 18 17 16 35 35 H 1.08998 * 109.97142 * 183.36987 * 18 17 16 36 36 H 1.09001 * 109.46764 * 59.99658 * 20 19 18 37 37 H 1.09002 * 109.47243 * 180.02562 * 20 19 18 38 38 H 1.09006 * 109.46743 * 300.00149 * 20 19 18 39 39 H 1.08998 * 109.47419 * 59.99934 * 21 19 18 40 40 H 1.09003 * 109.47231 * 179.97438 * 21 19 18 41 41 H 1.08999 * 109.46952 * 299.99802 * 21 19 18 42 42 H 1.09000 * 109.94602 * 303.85533 * 22 15 14 43 43 H 1.09006 * 109.94698 * 65.10896 * 22 15 14 44 44 H 1.08000 * 123.35606 * 180.28101 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5162 -0.0006 5 8 0.3751 2.4983 0.6726 6 14 2.7922 3.6829 0.8778 7 1 4.1019 3.7014 0.1783 8 1 2.2115 5.0497 0.8767 9 1 2.9851 3.2276 2.2781 10 16 3.8969 0.7892 0.0076 11 6 3.5937 -0.9427 0.0008 12 6 4.6231 -1.9863 0.0024 13 8 4.3001 -3.1597 0.0029 14 7 5.9272 -1.6463 0.0090 15 7 6.8848 -2.6143 0.1194 16 6 7.7739 -2.3457 1.2505 17 6 8.4574 -3.6153 1.7509 18 6 9.5950 -3.9951 0.7859 19 14 8.8242 -4.1926 -0.9120 20 6 10.1479 -4.1453 -2.2222 21 6 7.8929 -5.8034 -1.0057 22 6 7.6449 -2.7531 -1.1396 23 6 2.2446 -1.1601 0.0004 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 1.4937 2.8503 -1.0284 28 1 0.4254 2.2101 1.5942 29 1 6.1859 -0.7144 -0.0648 30 1 8.5362 -1.6309 0.9407 31 1 7.1921 -1.9131 2.0643 32 1 8.8674 -3.4399 2.7456 33 1 7.7309 -4.4267 1.7942 34 1 10.3450 -3.2044 0.7648 35 1 10.0522 -4.9333 1.1003 36 1 10.8556 -4.9569 -2.0530 37 1 9.6906 -4.2603 -3.2050 38 1 10.6718 -3.1906 -2.1750 39 1 7.1060 -5.8125 -0.2515 40 1 7.4483 -5.9091 -1.9953 41 1 8.5790 -6.6308 -0.8250 42 1 6.9630 -2.9578 -1.9650 43 1 8.2065 -1.8400 -1.3376 44 1 1.8018 -2.1451 0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:34:51 Heat of formation + Delta-G solvation = -45.696328 kcal Electronic energy + Delta-G solvation = -23877.679200 eV Core-core repulsion = 20467.024842 eV Total energy + Delta-G solvation = -3410.654359 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.00069 -40.00424 -38.45530 -37.27831 -34.93210 -32.55492 -31.23734 -30.25296 -29.41902 -28.40477 -27.65431 -26.67070 -24.98826 -23.88747 -21.96728 -21.69238 -20.22124 -19.42633 -18.51297 -17.58583 -17.22037 -16.81847 -16.47470 -16.21225 -15.57377 -15.46837 -15.02794 -14.86695 -14.81191 -14.53904 -14.35163 -14.10558 -14.08800 -13.84619 -13.59261 -13.49704 -13.27557 -13.15250 -13.11609 -13.05739 -12.94573 -12.55912 -12.34740 -12.17631 -12.11592 -12.05813 -11.78652 -11.33331 -10.87687 -10.80199 -10.74732 -10.42282 -10.16413 -9.77156 -9.69005 -9.43480 -0.60949 0.25991 0.67421 0.93924 1.24573 1.32538 1.34742 1.37009 1.71948 1.76752 1.80282 2.03475 2.29087 2.53216 3.20602 3.32441 3.54525 3.74303 3.90898 4.08051 4.12408 4.27781 4.35715 4.44387 4.45252 4.57284 4.59865 4.63771 4.65713 4.68633 4.80436 4.80877 4.86420 4.88400 4.93737 4.99442 5.05349 5.20865 5.34411 5.39566 5.41692 5.47024 5.69464 5.73953 6.23512 6.32768 6.36627 7.49794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.089 4.089 3 C -0.237 4.237 4 C -0.039 4.039 5 O -0.528 6.528 6 Si 0.904 3.096 7 H -0.233 1.233 8 H -0.229 1.229 9 H -0.240 1.240 10 S 0.177 5.823 11 C -0.254 4.254 12 C 0.607 3.393 13 O -0.498 6.498 14 N -0.584 5.584 15 N -0.273 5.273 16 C 0.025 3.975 17 C -0.100 4.100 18 C -0.410 4.410 19 Si 1.032 2.968 20 C -0.450 4.450 21 C -0.443 4.443 22 C -0.262 4.262 23 C -0.045 4.045 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.128 0.872 28 H 0.379 0.621 29 H 0.374 0.626 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.053 0.947 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.426 3.310 0.539 4.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 C -0.356 4.356 4 C -0.151 4.151 5 O -0.333 6.333 6 Si 0.724 3.276 7 H -0.157 1.157 8 H -0.152 1.152 9 H -0.162 1.162 10 S 0.445 5.555 11 C -0.376 4.376 12 C 0.393 3.607 13 O -0.372 6.372 14 N -0.328 5.328 15 N -0.089 5.089 16 C -0.103 4.103 17 C -0.138 4.138 18 C -0.496 4.496 19 Si 1.224 2.776 20 C -0.558 4.558 21 C -0.551 4.551 22 C -0.435 4.435 23 C -0.078 4.078 24 H 0.090 0.910 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.145 0.855 28 H 0.226 0.774 29 H 0.213 0.787 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.072 0.928 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.597 3.763 0.512 5.231 hybrid contribution -0.722 -0.002 -0.022 0.723 sum 2.875 3.762 0.490 4.760 Atomic orbital electron populations 1.20651 0.88407 1.03528 1.02848 1.18714 0.98504 0.90398 1.02579 1.24461 0.98167 1.01080 1.11931 1.24389 0.92293 0.94962 1.03472 1.86541 1.27662 1.90021 1.29107 0.86220 0.78749 0.81160 0.81514 1.15661 1.15155 1.16209 1.83008 1.03715 0.98972 1.69821 1.24494 0.97899 0.96550 1.18636 1.16692 0.80126 0.87486 0.76366 1.90842 1.80875 1.17949 1.47542 1.45436 1.04016 1.06388 1.76985 1.62984 1.10963 1.31533 1.03415 1.22586 0.95288 0.98941 0.93499 1.21186 0.96931 0.96896 0.98833 1.26382 1.02815 1.04675 1.15735 0.79215 0.65100 0.66311 0.66933 1.26115 1.12512 1.04646 1.12536 1.26020 1.08650 1.15465 1.04997 1.28119 1.07310 1.13761 0.94336 1.20742 0.90732 1.00263 0.96095 0.91007 0.89484 0.91835 0.85468 0.77352 0.78724 0.93522 0.90031 0.90724 0.90172 0.90670 0.90009 0.90678 0.91032 0.91244 0.90300 0.91334 0.91356 0.89001 0.92827 0.82529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.07 8.67 36.01 0.31 0.38 16 2 C -0.09 -0.05 5.75 -106.45 -0.61 -0.66 16 3 C -0.24 0.04 5.54 -35.86 -0.20 -0.16 16 4 C -0.04 0.06 2.76 36.01 0.10 0.16 16 5 O -0.53 0.77 9.85 -35.23 -0.35 0.43 16 6 Si 0.90 -1.39 26.59 -169.99 -4.52 -5.91 16 7 H -0.23 0.32 7.10 56.52 0.40 0.72 16 8 H -0.23 0.12 7.11 56.52 0.40 0.52 16 9 H -0.24 0.21 7.11 56.52 0.40 0.61 16 10 S 0.18 -0.02 19.79 -107.50 -2.13 -2.15 16 11 C -0.25 -0.55 6.45 -36.79 -0.24 -0.78 16 12 C 0.61 2.46 7.88 -12.90 -0.10 2.35 16 13 O -0.50 -3.83 17.17 5.18 0.09 -3.74 16 14 N -0.58 -1.07 4.70 30.24 0.14 -0.92 16 15 N -0.27 -0.44 4.15 -56.97 -0.24 -0.68 16 16 C 0.02 0.00 5.38 -4.31 -0.02 -0.03 16 17 C -0.10 0.07 5.74 -26.44 -0.15 -0.08 16 18 C -0.41 0.70 5.03 37.64 0.19 0.89 16 19 Si 1.03 -1.96 11.99 -169.99 -2.04 -4.00 16 20 C -0.45 0.77 8.65 101.05 0.87 1.64 16 21 C -0.44 -0.07 8.65 101.05 0.87 0.80 16 22 C -0.26 0.00 4.86 60.51 0.29 0.30 16 23 C -0.05 -0.08 9.80 -40.44 -0.40 -0.48 16 24 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 25 H 0.09 -0.03 6.41 -51.93 -0.33 -0.36 16 26 H 0.06 -0.05 8.13 -51.93 -0.42 -0.48 16 27 H 0.13 -0.31 7.96 -51.93 -0.41 -0.72 16 28 H 0.38 -1.57 8.66 45.56 0.39 -1.17 16 29 H 0.37 -0.15 7.95 -185.16 -1.47 -1.62 16 30 H 0.05 -0.07 7.78 -51.93 -0.40 -0.47 16 31 H 0.08 -0.01 8.03 -51.93 -0.42 -0.42 16 32 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 33 H 0.08 0.02 7.96 -51.93 -0.41 -0.39 16 34 H 0.07 -0.16 7.99 -51.93 -0.42 -0.58 16 35 H 0.08 -0.16 7.99 -51.93 -0.42 -0.58 16 36 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 39 H 0.08 0.13 7.96 -51.93 -0.41 -0.28 16 40 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 41 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 42 H 0.09 0.09 7.99 -51.93 -0.41 -0.32 16 43 H 0.05 -0.06 7.92 -51.93 -0.41 -0.47 16 44 H 0.16 0.26 8.06 -52.49 -0.42 -0.16 16 LS Contribution 367.64 15.07 5.54 5.54 Total: 0.00 -6.53 367.64 -10.26 -16.79 By element: Atomic # 1 Polarization: -2.01 SS G_CDS: -7.68 Total: -9.69 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 0.92 Total: 4.34 kcal Atomic # 7 Polarization: -1.51 SS G_CDS: -0.09 Total: -1.60 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: -0.26 Total: -3.32 kcal Atomic # 14 Polarization: -3.35 SS G_CDS: -6.56 Total: -9.91 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.13 Total: -2.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -6.53 -10.26 -16.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.907 kcal (2) G-P(sol) polarization free energy of solvation -6.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds