Wall clock time and date at job start Sun Mar 7 2021 09:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33812 * 122.44888 * 2 1 4 4 C 1.50707 * 124.52372 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.47008 * 29.99794 * 4 3 2 6 6 Si 1.86299 * 109.47009 * 149.99930 * 4 3 2 7 7 H 1.48497 * 109.47095 * 59.99990 * 6 4 3 8 8 H 1.48504 * 109.46809 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46877 * 299.99707 * 6 4 3 10 10 S 1.70612 * 110.95224 * 179.72532 * 3 2 1 11 11 C 1.75822 * 91.56491 * 0.32900 * 10 3 2 12 12 C 1.46588 * 125.45940 * 179.97438 * 11 10 3 13 13 O 1.21706 * 119.99739 * 179.68986 * 12 11 10 14 14 N 1.34773 * 119.99617 * 359.96557 * 12 11 10 15 15 N 1.36611 * 119.99449 * 174.71861 * 14 12 11 16 16 C 1.46357 * 110.99451 * 235.43398 * 15 14 12 17 17 C 1.52624 * 111.88976 * 156.80510 * 16 15 14 18 18 C 1.53932 * 109.31051 * 76.51956 * 17 16 15 19 19 Si 1.87517 * 106.85115 * 302.79531 * 18 17 16 20 20 C 1.86300 * 110.00453 * 163.09938 * 19 18 17 21 21 C 1.86298 * 110.00272 * 284.40577 * 19 18 17 22 22 C 1.47719 * 110.99996 * 111.08557 * 15 14 12 23 23 C 1.36647 * 109.08330 * 359.67568 * 11 10 3 24 24 H 1.08998 * 109.47473 * 269.99860 * 1 2 3 25 25 H 1.08998 * 109.47314 * 29.99578 * 1 2 3 26 26 H 1.08996 * 109.47342 * 149.99382 * 1 2 3 27 27 H 1.09004 * 109.46951 * 270.00099 * 4 3 2 28 28 H 0.96696 * 114.00419 * 60.00199 * 5 4 3 29 29 H 0.96991 * 120.00727 * 354.71122 * 14 12 11 30 30 H 1.09002 * 108.99500 * 277.42488 * 16 15 14 31 31 H 1.08996 * 109.00382 * 36.26062 * 16 15 14 32 32 H 1.09002 * 109.49803 * 196.47121 * 17 16 15 33 33 H 1.08998 * 109.49632 * 316.57051 * 17 16 15 34 34 H 1.09006 * 109.97624 * 62.13290 * 18 17 16 35 35 H 1.08998 * 109.97142 * 183.36987 * 18 17 16 36 36 H 1.09001 * 109.46764 * 59.99658 * 20 19 18 37 37 H 1.09002 * 109.47243 * 180.02562 * 20 19 18 38 38 H 1.09006 * 109.46743 * 300.00149 * 20 19 18 39 39 H 1.08998 * 109.47419 * 59.99934 * 21 19 18 40 40 H 1.09003 * 109.47231 * 179.97438 * 21 19 18 41 41 H 1.08999 * 109.46952 * 299.99802 * 21 19 18 42 42 H 1.09000 * 109.94602 * 303.85533 * 22 15 14 43 43 H 1.09006 * 109.94698 * 65.10896 * 22 15 14 44 44 H 1.08000 * 123.35606 * 180.28101 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5162 -0.0006 5 8 0.3751 2.4983 0.6726 6 14 2.7922 3.6829 0.8778 7 1 4.1019 3.7014 0.1783 8 1 2.2115 5.0497 0.8767 9 1 2.9851 3.2276 2.2781 10 16 3.8969 0.7892 0.0076 11 6 3.5937 -0.9427 0.0008 12 6 4.6231 -1.9863 0.0024 13 8 4.3001 -3.1597 0.0029 14 7 5.9272 -1.6463 0.0090 15 7 6.8848 -2.6143 0.1194 16 6 7.7739 -2.3457 1.2505 17 6 8.4574 -3.6153 1.7509 18 6 9.5950 -3.9951 0.7859 19 14 8.8242 -4.1926 -0.9120 20 6 10.1479 -4.1453 -2.2222 21 6 7.8929 -5.8034 -1.0057 22 6 7.6449 -2.7531 -1.1396 23 6 2.2446 -1.1601 0.0004 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 1.4937 2.8503 -1.0284 28 1 0.4254 2.2101 1.5942 29 1 6.1859 -0.7144 -0.0648 30 1 8.5362 -1.6309 0.9407 31 1 7.1921 -1.9131 2.0643 32 1 8.8674 -3.4399 2.7456 33 1 7.7309 -4.4267 1.7942 34 1 10.3450 -3.2044 0.7648 35 1 10.0522 -4.9333 1.1003 36 1 10.8556 -4.9569 -2.0530 37 1 9.6906 -4.2603 -3.2050 38 1 10.6718 -3.1906 -2.1750 39 1 7.1060 -5.8125 -0.2515 40 1 7.4483 -5.9091 -1.9953 41 1 8.5790 -6.6308 -0.8250 42 1 6.9630 -2.9578 -1.9650 43 1 8.2065 -1.8400 -1.3376 44 1 1.8018 -2.1451 0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16608516_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:34:50 Heat of formation + Delta-G solvation = -39.655429 kcal Electronic energy + Delta-G solvation = -23877.417247 eV Core-core repulsion = 20467.024842 eV Total energy + Delta-G solvation = -3410.392406 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.119 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19078 -40.01372 -38.58567 -37.25309 -35.00294 -32.63931 -31.27419 -30.20783 -29.34116 -28.35693 -27.60853 -26.70493 -24.96980 -23.91501 -21.95715 -21.85889 -20.23271 -19.50993 -18.58113 -17.53794 -17.32067 -16.89859 -16.38887 -16.26824 -15.63933 -15.59814 -15.01436 -14.87021 -14.77563 -14.51388 -14.36531 -14.08163 -13.99030 -13.80807 -13.52467 -13.48184 -13.19760 -13.14175 -13.11520 -13.02673 -12.95149 -12.49858 -12.30248 -12.11954 -12.05783 -11.97937 -11.77441 -11.48353 -10.97187 -10.80951 -10.67859 -10.38833 -10.26232 -9.78823 -9.72723 -9.44524 -0.70909 0.21138 0.64058 1.00003 1.27578 1.34708 1.37568 1.44318 1.78154 1.86806 1.90416 2.05531 2.12923 2.60509 3.28886 3.35797 3.58670 3.69198 3.98030 4.08613 4.13467 4.27264 4.37891 4.50832 4.53459 4.59890 4.65861 4.71056 4.79489 4.79931 4.80424 4.84060 4.84694 4.90511 4.91779 5.01615 5.08912 5.29536 5.38046 5.46884 5.49310 5.57266 5.65665 5.76916 6.05803 6.21868 6.59699 7.32736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.099 4.099 3 C -0.233 4.233 4 C -0.036 4.036 5 O -0.536 6.536 6 Si 0.927 3.073 7 H -0.232 1.232 8 H -0.242 1.242 9 H -0.248 1.248 10 S 0.214 5.786 11 C -0.279 4.279 12 C 0.605 3.395 13 O -0.549 6.549 14 N -0.576 5.576 15 N -0.298 5.298 16 C 0.023 3.977 17 C -0.102 4.102 18 C -0.411 4.411 19 Si 1.093 2.907 20 C -0.453 4.453 21 C -0.465 4.465 22 C -0.276 4.276 23 C -0.051 4.051 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.140 0.860 28 H 0.390 0.610 29 H 0.386 0.614 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 4.848 0.582 6.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.352 4.352 4 C -0.149 4.149 5 O -0.343 6.343 6 Si 0.748 3.252 7 H -0.156 1.156 8 H -0.165 1.165 9 H -0.171 1.171 10 S 0.482 5.518 11 C -0.400 4.400 12 C 0.392 3.608 13 O -0.426 6.426 14 N -0.319 5.319 15 N -0.114 5.114 16 C -0.104 4.104 17 C -0.141 4.141 18 C -0.497 4.497 19 Si 1.281 2.719 20 C -0.562 4.562 21 C -0.570 4.570 22 C -0.447 4.447 23 C -0.085 4.085 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.157 0.843 28 H 0.240 0.760 29 H 0.226 0.774 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.755 5.319 0.557 7.157 hybrid contribution -1.118 -0.443 -0.024 1.203 sum 3.637 4.877 0.533 6.107 Atomic orbital electron populations 1.20645 0.87523 1.03398 1.03478 1.18779 0.99155 0.90043 1.03150 1.24761 0.98280 1.01694 1.10482 1.24479 0.92325 0.93778 1.04288 1.86521 1.27613 1.89991 1.30153 0.85898 0.78409 0.80117 0.80804 1.15559 1.16517 1.17127 1.82797 1.03476 0.96558 1.68934 1.24419 0.97603 0.97790 1.20200 1.17018 0.80996 0.87262 0.75535 1.90803 1.81707 1.19910 1.50212 1.45361 1.03647 1.07120 1.75797 1.62999 1.11661 1.32124 1.04652 1.22641 0.95382 0.99639 0.92760 1.21210 0.96985 0.96165 0.99727 1.26398 1.02710 1.05491 1.15097 0.78312 0.63566 0.63135 0.66876 1.26138 1.12512 1.05318 1.12205 1.26331 1.08659 1.18266 1.03767 1.28379 1.07343 1.15749 0.93212 1.20837 0.90985 1.00584 0.96129 0.90009 0.89516 0.91988 0.84279 0.76033 0.77386 0.91646 0.90486 0.89776 0.91785 0.89238 0.89420 0.90226 0.91267 0.90375 0.92442 0.92120 0.90723 0.90617 0.91255 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.13 8.67 71.24 0.62 0.75 16 2 C -0.10 -0.14 5.75 -21.05 -0.12 -0.26 16 3 C -0.23 0.16 5.54 24.68 0.14 0.30 16 4 C -0.04 0.15 2.76 71.24 0.20 0.34 16 5 O -0.54 2.06 9.85 -148.98 -1.47 0.60 16 6 Si 0.93 -3.65 26.59 68.60 1.82 -1.83 16 7 H -0.23 0.95 7.10 99.48 0.71 1.65 16 8 H -0.24 0.38 7.11 99.48 0.71 1.09 16 9 H -0.25 0.61 7.11 99.48 0.71 1.32 16 10 S 0.21 -0.10 19.79 -56.49 -1.12 -1.22 16 11 C -0.28 -1.58 6.45 24.08 0.16 -1.43 16 12 C 0.60 6.18 7.88 86.42 0.68 6.86 16 13 O -0.55 -10.23 17.17 -4.37 -0.07 -10.30 16 14 N -0.58 -2.79 4.70 -176.45 -0.83 -3.62 16 15 N -0.30 -1.29 4.15 -334.15 -1.39 -2.68 16 16 C 0.02 -0.01 5.38 86.28 0.46 0.46 16 17 C -0.10 0.14 5.74 30.78 0.18 0.31 16 18 C -0.41 1.81 5.03 72.30 0.36 2.17 16 19 Si 1.09 -4.11 11.99 68.60 0.82 -3.29 16 20 C -0.45 2.04 8.65 113.37 0.98 3.02 16 21 C -0.46 -0.97 8.65 113.37 0.98 0.01 16 22 C -0.28 -0.15 4.86 127.53 0.62 0.47 16 23 C -0.05 -0.27 9.80 21.72 0.21 -0.05 16 24 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 25 H 0.09 -0.10 6.41 -2.39 -0.02 -0.11 16 26 H 0.06 -0.07 8.13 -2.39 -0.02 -0.09 16 27 H 0.14 -0.87 7.96 -2.38 -0.02 -0.89 16 28 H 0.39 -3.57 8.66 -74.06 -0.64 -4.21 16 29 H 0.39 -0.17 7.95 -215.50 -1.71 -1.89 16 30 H 0.07 -0.28 7.78 -2.39 -0.02 -0.29 16 31 H 0.08 0.02 8.03 -2.39 -0.02 0.01 16 32 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.06 0.13 7.96 -2.39 -0.02 0.11 16 34 H 0.09 -0.60 7.99 -2.38 -0.02 -0.61 16 35 H 0.09 -0.44 7.99 -2.39 -0.02 -0.46 16 36 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 37 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 38 H 0.08 -0.45 7.96 -2.38 -0.02 -0.47 16 39 H 0.06 0.37 7.96 -2.39 -0.02 0.35 16 40 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 41 H 0.07 0.01 7.96 -2.39 -0.02 -0.01 16 42 H 0.08 0.28 7.99 -2.39 -0.02 0.26 16 43 H 0.07 -0.21 7.92 -2.38 -0.02 -0.23 16 44 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 Total: 0.00 -16.72 367.64 2.64 -14.09 By element: Atomic # 1 Polarization: -4.11 SS G_CDS: -0.60 Total: -4.71 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 5.47 Total: 12.96 kcal Atomic # 7 Polarization: -4.08 SS G_CDS: -2.22 Total: -6.30 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -1.54 Total: -9.71 kcal Atomic # 14 Polarization: -7.76 SS G_CDS: 2.65 Total: -5.11 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.12 Total: -1.22 kcal Total: -16.72 2.64 -14.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.568 kcal (2) G-P(sol) polarization free energy of solvation -16.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds