Wall clock time and date at job start Sun Mar 7 2021 09:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86305 * 109.98349 * 2 1 4 4 C 1.87519 * 110.00356 * 121.31319 * 2 1 3 5 5 C 1.53929 * 106.84926 * 75.50844 * 4 2 1 6 6 C 1.52617 * 109.31491 * 57.19876 * 5 4 2 7 7 N 1.46350 * 111.89350 * 283.48118 * 6 5 4 8 8 N 1.36603 * 111.00354 * 203.19574 * 7 6 5 9 9 C 1.34772 * 120.00556 * 124.56125 * 8 7 6 10 10 O 1.21643 * 119.99932 * 5.01453 * 9 8 7 11 11 C 1.47183 * 120.00428 * 185.02018 * 9 8 7 12 12 C 1.36007 * 123.46143 * 359.69619 * 11 9 8 13 13 S 1.70444 * 110.81880 * 179.89579 * 12 11 9 14 14 C 1.75504 * 92.44427 * 0.32304 * 13 12 11 15 15 C 1.50706 * 124.71018 * 179.78702 * 14 13 12 16 16 O 1.42902 * 109.47330 * 120.04206 * 15 14 13 17 17 Si 1.86298 * 109.47340 * 0.03527 * 15 14 13 18 18 H 1.48502 * 109.47178 * 60.00179 * 17 15 14 19 19 H 1.48497 * 109.47185 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46975 * 300.00537 * 17 15 14 21 21 C 1.32765 * 110.57829 * 359.81747 * 14 13 12 22 22 C 1.47729 * 111.30755 * 79.02266 * 7 6 5 23 23 H 1.09004 * 109.47263 * 298.68044 * 1 2 3 24 24 H 1.09004 * 109.46898 * 178.68336 * 1 2 3 25 25 H 1.09004 * 109.47362 * 58.68866 * 1 2 3 26 26 H 1.08995 * 109.46824 * 60.00176 * 3 2 1 27 27 H 1.08997 * 109.47046 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46832 * 300.00203 * 3 2 1 29 29 H 1.09008 * 109.97777 * 194.83770 * 4 2 1 30 30 H 1.08998 * 109.97807 * 316.07671 * 4 2 1 31 31 H 1.09000 * 109.49901 * 177.15982 * 5 4 2 32 32 H 1.09001 * 109.49635 * 297.21708 * 5 4 2 33 33 H 1.09000 * 108.99612 * 44.10381 * 6 5 4 34 34 H 1.09002 * 108.99794 * 162.93782 * 6 5 4 35 35 H 0.97003 * 119.99709 * 304.56561 * 8 7 6 36 36 H 1.08000 * 124.58998 * 0.02562 * 12 11 9 37 37 H 1.09006 * 109.46672 * 240.03730 * 15 14 13 38 38 H 0.96704 * 113.99589 * 299.99493 * 16 15 14 39 39 H 1.07997 * 123.46310 * 179.97438 * 21 14 13 40 40 H 1.08998 * 109.95022 * 180.31749 * 22 7 6 41 41 H 1.09000 * 109.94500 * 59.05887 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4996 1.7509 0.0000 4 6 2.5044 -0.9158 1.5054 5 6 2.3106 -2.4178 1.2300 6 6 3.0399 -2.7932 -0.0570 7 7 2.3060 -2.3593 -1.2465 8 7 2.6567 -3.1037 -2.3369 9 6 1.7091 -3.7491 -3.0454 10 8 0.5342 -3.5961 -2.7702 11 6 2.0959 -4.6391 -4.1520 12 6 3.3861 -4.8567 -4.5234 13 16 3.4639 -5.9422 -5.8352 14 6 1.7178 -6.1067 -5.8999 15 6 0.9730 -6.9684 -6.8869 16 8 0.2094 -7.9491 -6.1819 17 14 2.1907 -7.8196 -8.0110 18 1 3.1017 -8.6683 -7.2017 19 1 1.4568 -8.6681 -8.9839 20 1 2.9842 -6.8003 -8.7436 21 6 1.1441 -5.3662 -4.9591 22 6 2.5043 -0.9181 -1.5036 23 1 -0.3634 0.4932 0.9016 24 1 -0.3633 -1.0274 -0.0236 25 1 -0.3634 0.5341 -0.8780 26 1 2.1409 2.2679 0.8900 27 1 3.5896 1.7411 -0.0005 28 1 2.1409 2.2679 -0.8900 29 1 3.5624 -0.6975 1.6513 30 1 1.9385 -0.6217 2.3893 31 1 2.7171 -2.9953 2.0603 32 1 1.2476 -2.6338 1.1227 33 1 4.0240 -2.3248 -0.0567 34 1 3.1625 -3.8758 -0.0925 35 1 3.5878 -3.1679 -2.6011 36 1 4.2450 -4.4047 -4.0498 37 1 0.3043 -6.3453 -7.4810 38 1 0.7409 -8.5402 -5.6313 39 1 0.0755 -5.3126 -4.8126 40 1 1.9446 -0.6179 -2.3894 41 1 3.5646 -0.7078 -1.6434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16608516_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:37:46 Heat of formation + Delta-G solvation = -42.103554 kcal Electronic energy + Delta-G solvation = -21859.543248 eV Core-core repulsion = 18604.582302 eV Total energy + Delta-G solvation = -3254.960945 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.06485 -39.20940 -38.23676 -36.97607 -34.92452 -32.45546 -30.92009 -29.41078 -28.39595 -27.63303 -26.99171 -26.09632 -24.18771 -22.05834 -21.86970 -20.49274 -19.20521 -18.23848 -18.04827 -17.50482 -16.78653 -16.34709 -15.84365 -15.68011 -15.39226 -14.96645 -14.87592 -14.59156 -14.42603 -14.32369 -14.09730 -13.84065 -13.64382 -13.58205 -13.54723 -13.25677 -13.13927 -13.00691 -12.69869 -12.41800 -12.24962 -12.11134 -12.05323 -11.80803 -11.27249 -10.86256 -10.70447 -10.61405 -10.39642 -10.11515 -10.00148 -9.73422 -9.51830 -0.37496 0.28766 0.63416 0.93085 1.04897 1.32052 1.38237 1.43755 1.73782 1.81019 1.82167 2.07070 2.46263 2.54766 3.28977 3.38270 3.56746 3.82331 3.92037 3.93972 4.11131 4.26904 4.36994 4.45947 4.47327 4.58404 4.64281 4.66013 4.69027 4.71194 4.81366 4.89322 4.94909 4.99965 5.03735 5.21784 5.23057 5.35285 5.41891 5.70748 5.76247 6.31191 6.43925 6.45870 7.59203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 1.031 2.969 3 C -0.450 4.450 4 C -0.410 4.410 5 C -0.100 4.100 6 C 0.026 3.974 7 N -0.274 5.274 8 N -0.583 5.583 9 C 0.593 3.407 10 O -0.504 6.504 11 C -0.149 4.149 12 C -0.205 4.205 13 S 0.177 5.823 14 C -0.242 4.242 15 C -0.038 4.038 16 O -0.531 6.531 17 Si 0.893 3.107 18 H -0.234 1.234 19 H -0.225 1.225 20 H -0.232 1.232 21 C -0.049 4.049 22 C -0.261 4.261 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.375 0.625 36 H 0.169 0.831 37 H 0.128 0.872 38 H 0.378 0.622 39 H 0.160 0.840 40 H 0.091 0.909 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.331 0.252 -0.041 5.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.224 2.776 3 C -0.558 4.558 4 C -0.496 4.496 5 C -0.139 4.139 6 C -0.102 4.102 7 N -0.090 5.090 8 N -0.328 5.328 9 C 0.378 3.622 10 O -0.378 6.378 11 C -0.169 4.169 12 C -0.343 4.343 13 S 0.443 5.557 14 C -0.359 4.359 15 C -0.151 4.151 16 O -0.337 6.337 17 Si 0.713 3.287 18 H -0.156 1.156 19 H -0.148 1.148 20 H -0.155 1.155 21 C -0.078 4.078 22 C -0.434 4.434 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.214 0.786 36 H 0.187 0.813 37 H 0.145 0.855 38 H 0.226 0.774 39 H 0.178 0.822 40 H 0.109 0.891 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.297 -0.519 -1.501 5.530 hybrid contribution 0.671 0.897 1.198 1.641 sum 5.968 0.378 -0.303 5.988 Atomic orbital electron populations 1.26023 1.19773 1.05261 1.04087 0.79221 0.68075 0.65558 0.64762 1.26116 1.06245 1.18621 1.04837 1.26376 1.06097 1.02669 1.14458 1.21181 1.01969 0.95830 0.94898 1.22566 0.95902 1.01523 0.90194 1.62962 1.52473 0.99707 0.93869 1.45422 1.08996 1.50554 1.27827 1.17370 0.85262 0.78876 0.80670 1.90810 1.17241 1.62323 1.67398 1.20261 0.92345 1.03698 1.00609 1.25699 1.00676 1.04726 1.03198 1.83215 1.03754 1.40478 1.28245 1.24787 0.96698 1.08513 1.05872 1.24377 1.01482 0.92271 0.96975 1.86559 1.36351 1.46020 1.64734 0.86288 0.78760 0.82436 0.81261 1.15645 1.14754 1.15542 1.21038 1.01085 0.93281 0.92384 1.28092 1.04411 0.93430 1.17461 0.91385 0.90280 0.91344 0.90687 0.91268 0.91053 0.90716 0.90034 0.90783 0.90178 0.93664 0.90091 0.78630 0.81334 0.85458 0.77438 0.82213 0.89064 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -0.12 8.65 101.05 0.87 0.76 16 2 Si 1.03 -1.94 11.99 -169.99 -2.04 -3.98 16 3 C -0.45 0.76 8.65 101.05 0.87 1.63 16 4 C -0.41 0.69 5.04 37.64 0.19 0.88 16 5 C -0.10 0.07 5.74 -26.44 -0.15 -0.08 16 6 C 0.03 -0.01 5.38 -4.32 -0.02 -0.03 16 7 N -0.27 -0.38 4.15 -56.97 -0.24 -0.62 16 8 N -0.58 -0.70 4.67 30.38 0.14 -0.55 16 9 C 0.59 2.19 7.89 -12.63 -0.10 2.09 16 10 O -0.50 -3.92 17.13 5.24 0.09 -3.83 16 11 C -0.15 -0.24 5.98 -104.63 -0.63 -0.87 16 12 C -0.20 0.19 10.38 29.93 0.31 0.50 16 13 S 0.18 -0.17 20.18 -107.50 -2.17 -2.34 16 14 C -0.24 -0.03 5.68 -36.18 -0.21 -0.23 16 15 C -0.04 0.03 2.95 36.01 0.11 0.14 16 16 O -0.53 -0.04 12.85 -35.23 -0.45 -0.49 16 17 Si 0.89 -1.12 26.19 -169.99 -4.45 -5.57 16 18 H -0.23 0.29 7.11 56.52 0.40 0.69 16 19 H -0.23 0.04 7.11 56.52 0.40 0.44 16 20 H -0.23 0.21 7.11 56.52 0.40 0.61 16 21 C -0.05 -0.09 9.91 -39.02 -0.39 -0.47 16 22 C -0.26 0.04 4.86 60.52 0.29 0.33 16 23 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 24 H 0.08 0.15 7.96 -51.93 -0.41 -0.27 16 25 H 0.07 0.04 7.96 -51.93 -0.41 -0.37 16 26 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.16 7.99 -51.92 -0.42 -0.58 16 30 H 0.08 -0.15 7.99 -51.93 -0.42 -0.57 16 31 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.08 0.03 7.96 -51.93 -0.41 -0.38 16 33 H 0.05 -0.07 7.78 -51.93 -0.40 -0.48 16 34 H 0.08 -0.02 8.03 -51.93 -0.42 -0.44 16 35 H 0.38 -0.61 7.34 -185.15 -1.36 -1.97 16 36 H 0.17 -0.63 7.02 -52.49 -0.37 -0.99 16 37 H 0.13 -0.20 7.96 -51.93 -0.41 -0.62 16 38 H 0.38 -1.20 8.70 45.56 0.40 -0.80 16 39 H 0.16 0.40 8.06 -52.49 -0.42 -0.02 16 40 H 0.09 0.09 7.99 -51.93 -0.41 -0.33 16 41 H 0.05 -0.07 7.92 -51.93 -0.41 -0.48 16 LS Contribution 350.25 15.07 5.28 5.28 Total: 0.00 -7.15 350.25 -9.44 -16.59 By element: Atomic # 1 Polarization: -2.37 SS G_CDS: -6.76 Total: -9.13 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 1.16 Total: 4.64 kcal Atomic # 7 Polarization: -1.08 SS G_CDS: -0.09 Total: -1.17 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.36 Total: -4.32 kcal Atomic # 14 Polarization: -3.06 SS G_CDS: -6.49 Total: -9.55 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.17 Total: -2.34 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -7.15 -9.44 -16.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16608516_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.510 kcal (2) G-P(sol) polarization free energy of solvation -7.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds